RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-229ENST00000641891 GOLGA6L22H0YM25 854 aa20.53■□□□□ 0.88
PHGDH-229ENST00000641891 XRCC6P12956 609 aaKnown RBP eCLIP20.53■□□□□ 0.885e-6■■□□□ 11.5
PHGDH-229ENST00000641891 PTMSP20962 102 aa20.53■□□□□ 0.88
PHGDH-229ENST00000641891 CASP7P55210 303 aa20.53■□□□□ 0.88
PHGDH-229ENST00000641891 PTPN12Q05209 780 aaKnown RBP20.53■□□□□ 0.88
PHGDH-229ENST00000641891 FOXD4L5Q5VV16 416 aaPredicted RBP20.53■□□□□ 0.88
PHGDH-229ENST00000641891 FOXD4L4Q8WXT5 416 aaPredicted RBP20.53■□□□□ 0.88
PHGDH-229ENST00000641891 BOLA2Q9H3K6 86 aa20.53■□□□□ 0.88
PHGDH-229ENST00000641891 SKOR2Q2VWA4 1001 aaPredicted RBP20.52■□□□□ 0.88
PHGDH-229ENST00000641891 NHSL1Q5SYE7 1610 aa20.52■□□□□ 0.88
PHGDH-229ENST00000641891 RABL6Q3YEC7 729 aaPredicted RBP20.52■□□□□ 0.88
PHGDH-229ENST00000641891 RUFY2Q8WXA3 655 aa20.52■□□□□ 0.88
PHGDH-229ENST00000641891 FAM227BQ96M60 508 aa20.52■□□□□ 0.88
PHGDH-229ENST00000641891 COPRSQ9NQ92 184 aa20.52■□□□□ 0.88
PHGDH-229ENST00000641891 TOGARAM1Q9Y4F4 1720 aa20.52■□□□□ 0.87
PHGDH-229ENST00000641891 NUP188Q5SRE5 1749 aa20.51■□□□□ 0.87
PHGDH-229ENST00000641891 TFCP2Q12800 502 aa20.51■□□□□ 0.87
PHGDH-229ENST00000641891 ERBB4Q15303 1308 aa20.5■□□□□ 0.87
PHGDH-229ENST00000641891 CPA1P15085 419 aa20.5■□□□□ 0.87
PHGDH-229ENST00000641891 NMIQ13287 307 aaPredicted RBP20.5■□□□□ 0.87
PHGDH-229ENST00000641891 LARP6Q9BRS8 491 aaKnown RBP20.5■□□□□ 0.87
PHGDH-229ENST00000641891 PANK2Q9BZ23 570 aa20.5■□□□□ 0.87
PHGDH-229ENST00000641891 ZBTB3Q9H5J0 574 aa20.49■□□□□ 0.87
PHGDH-229ENST00000641891 COL15A1P39059 1388 aa20.49■□□□□ 0.87
PHGDH-229ENST00000641891 EDC3Q96F86 508 aaKnown RBP20.49■□□□□ 0.87
PHGDH-229ENST00000641891 TTC14Q96N46 770 aa20.49■□□□□ 0.87
PHGDH-229ENST00000641891 DDX49Q9Y6V7 483 aaKnown RBP20.49■□□□□ 0.87
PHGDH-229ENST00000641891 TNS2Q63HR2 1409 aa20.49■□□□□ 0.87
PHGDH-229ENST00000641891 PRPF40BQ6NWY9 871 aaKnown RBP20.48■□□□□ 0.87
PHGDH-229ENST00000641891 LMBR1LQ6UX01 489 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 GAS2L3Q86XJ1 694 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 LMBRD1Q9NUN5 540 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 DBNLQ9UJU6 430 aaKnown RBP20.48■□□□□ 0.87
PHGDH-229ENST00000641891 TJP1Q07157 1748 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 FOXO4P98177 505 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 TNNI3KQ59H18 835 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 INTS4Q96HW7 963 aaKnown RBP20.48■□□□□ 0.87
PHGDH-229ENST00000641891 FSD1Q9BTV5 496 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 FPGT-TNNI3KV9GXZ4 949 aa20.48■□□□□ 0.87
PHGDH-229ENST00000641891 A0A0D9SFI3 127 aa20.47■□□□□ 0.87
PHGDH-229ENST00000641891 H7C1W4 665 aa20.47■□□□□ 0.87
PHGDH-229ENST00000641891 AK2P54819 239 aa20.47■□□□□ 0.87
PHGDH-229ENST00000641891 CHMP3Q9Y3E7 222 aa20.47■□□□□ 0.87
PHGDH-229ENST00000641891 CCDC171Q6TFL3 1326 aa20.47■□□□□ 0.87
PHGDH-229ENST00000641891 CASTP20810 708 aaKnown RBP20.46■□□□□ 0.87
PHGDH-229ENST00000641891 KLHL40Q2TBA0 621 aa20.46■□□□□ 0.87
PHGDH-229ENST00000641891 ADCK5Q3MIX3 580 aa20.46■□□□□ 0.87
PHGDH-229ENST00000641891 NDUFB9Q9Y6M9 179 aa20.46■□□□□ 0.87
PHGDH-229ENST00000641891 CWC25Q9NXE8 425 aaPredicted RBP20.46■□□□□ 0.87
PHGDH-229ENST00000641891 BRD1O95696 1058 aa20.45■□□□□ 0.86
PHGDH-229ENST00000641891 RUFY3Q7L099 469 aa20.45■□□□□ 0.86
PHGDH-229ENST00000641891 GRPEL1Q9HAV7 217 aa20.45■□□□□ 0.86
PHGDH-229ENST00000641891 BTG4Q9NY30 223 aa20.45■□□□□ 0.86
PHGDH-229ENST00000641891 TMOD3Q9NYL9 352 aa20.45■□□□□ 0.86
PHGDH-229ENST00000641891 RBM8AQ9Y5S9 174 aaKnown RBP20.45■□□□□ 0.86
PHGDH-229ENST00000641891 PRPF40AO75400 957 aaKnown RBP20.44■□□□□ 0.86
PHGDH-229ENST00000641891 JAKMIP1Q96N16 626 aaKnown RBP20.44■□□□□ 0.86
PHGDH-229ENST00000641891 DBNDD2Q9BQY9 259 aa20.44■□□□□ 0.86
PHGDH-229ENST00000641891 HIP1O00291 1037 aa20.44■□□□□ 0.86
PHGDH-229ENST00000641891 MRE11P49959 708 aa20.44■□□□□ 0.86
PHGDH-229ENST00000641891 NECTIN1Q15223 517 aa20.44■□□□□ 0.86
PHGDH-229ENST00000641891 KCNB2Q92953 911 aa20.43■□□□□ 0.86
PHGDH-229ENST00000641891 ASAP1Q9ULH1 1129 aa20.43■□□□□ 0.86
PHGDH-229ENST00000641891 ZNF330Q9Y3S2 320 aaPredicted RBP20.43■□□□□ 0.86
PHGDH-229ENST00000641891 CCDC9Q9Y3X0 531 aaKnown RBP20.43■□□□□ 0.86
PHGDH-229ENST00000641891 LARGE1O95461 756 aa20.42■□□□□ 0.86
PHGDH-229ENST00000641891 ATP5JP18859 108 aa20.42■□□□□ 0.86
PHGDH-229ENST00000641891 NCLP19338 710 aaKnown RBP20.42■□□□□ 0.86
PHGDH-229ENST00000641891 CHGBP05060 677 aa20.42■□□□□ 0.86
PHGDH-229ENST00000641891 CREB3L3Q68CJ9 461 aa20.42■□□□□ 0.86
PHGDH-229ENST00000641891 ZNF589Q86UQ0 364 aaPredicted RBP20.42■□□□□ 0.86
PHGDH-229ENST00000641891 PIGBQ92521 554 aa20.42■□□□□ 0.86
PHGDH-229ENST00000641891 COL9A3Q14050 684 aaPredicted RBP20.41■□□□□ 0.86
PHGDH-229ENST00000641891 MAP4K1Q92918 833 aa20.41■□□□□ 0.86
PHGDH-229ENST00000641891 SNRKQ9NRH2 765 aa20.41■□□□□ 0.86
PHGDH-229ENST00000641891 LIMCH1Q9UPQ0 1083 aa20.41■□□□□ 0.86
PHGDH-229ENST00000641891 MED23Q9ULK4 1368 aa20.41■□□□□ 0.86
PHGDH-229ENST00000641891 KCNJ4P48050 445 aa20.41■□□□□ 0.86
PHGDH-229ENST00000641891 CAVIN1Q6NZI2 390 aaKnown RBP20.41■□□□□ 0.86
PHGDH-229ENST00000641891 GPT2Q8TD30 523 aa20.41■□□□□ 0.86
PHGDH-229ENST00000641891 RPAP1Q9BWH6 1393 aaPredicted RBP20.41■□□□□ 0.86
PHGDH-229ENST00000641891 DTNBO60941 627 aa20.4■□□□□ 0.86
PHGDH-229ENST00000641891 ATG9AQ7Z3C6 839 aa20.4■□□□□ 0.86
PHGDH-229ENST00000641891 DNAJC10Q8IXB1 793 aa20.4■□□□□ 0.86
PHGDH-229ENST00000641891 CCDC191Q8NCU4 936 aa20.4■□□□□ 0.86
PHGDH-229ENST00000641891 ZNF594Q96JF6 807 aaPredicted RBP20.4■□□□□ 0.86
PHGDH-229ENST00000641891 DNAJC2Q99543 621 aaKnown RBP20.4■□□□□ 0.86
PHGDH-229ENST00000641891 PDRG1Q9NUG6 133 aa20.4■□□□□ 0.86
PHGDH-229ENST00000641891 FOXD4L6Q3SYB3 417 aaPredicted RBP20.39■□□□□ 0.86
PHGDH-229ENST00000641891 FOXD4L3Q6VB84 417 aaPredicted RBP20.39■□□□□ 0.86
PHGDH-229ENST00000641891 ZSWIM6Q9HCJ5 1215 aa20.39■□□□□ 0.86
PHGDH-229ENST00000641891 TAF6LQ9Y6J9 622 aa20.39■□□□□ 0.86
PHGDH-229ENST00000641891 SLC27A2O14975 620 aa20.39■□□□□ 0.85
PHGDH-229ENST00000641891 ATG3Q9NT62 314 aa20.38■□□□□ 0.85
PHGDH-229ENST00000641891 RBM27Q9P2N5 1060 aaKnown RBP20.38■□□□□ 0.85
PHGDH-229ENST00000641891 ISY1Q9ULR0 285 aaKnown RBP20.38■□□□□ 0.85
PHGDH-229ENST00000641891 CYP46A1Q9Y6A2 500 aa20.38■□□□□ 0.85
PHGDH-229ENST00000641891 LRRC24Q50LG9 513 aa20.38■□□□□ 0.85
PHGDH-229ENST00000641891 TM6SF1Q9BZW5 370 aa20.38■□□□□ 0.85
PHGDH-229ENST00000641891 ZKSCAN1P17029 563 aaPredicted RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms