RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NONOQ15233 471 aaKnown RBP eCLIP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 DDX46Q7L014 1031 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PPFIBP1Q86W92 1011 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 SUPT20HQ8NEM7 779 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC12Q8WUD4 166 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 RSRC1Q96IZ7 334 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 ZSCAN31Q96LW9 406 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 SH2D4AQ9H788 454 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 FEZ2Q9UHY8 353 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 KIAA1217Q5T5P2 1943 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 ARHGEF37A1IGU5 675 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 RGL3Q3MIN7 710 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 C6orf163Q5TEZ5 329 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PNISRQ8TF01 805 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 LUC7L2Q9Y383 392 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 STX6O43752 255 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 DKC1O60832 514 aaKnown RBP eCLIP3.18□□□□□ -1.96e-8■■■■■ 53.6
SCN1A-219ENST00000641575 RRP1P56182 461 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 GRM1Q13255 1194 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 TTC16Q8NEE8 873 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 MPHOSPH8Q99549 860 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CRACR2AQ9BSW2 395 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 TMEM106CQ9BVX2 250 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 SEC63Q9UGP8 760 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 USP25Q9UHP3 1055 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 GOLGA6CA6NDK9 693 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 GOLGA6BA6NDN3 693 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 GOLGA6DP0CG33 693 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PAX3P23760 479 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 NBPF1Q3BBV0 1214 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 DNAJC21Q5F1R6 531 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 SPECC1LQ69YQ0 1117 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CYB5RLQ6IPT4 315 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 TTLL7Q6ZT98 887 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 GOLGA6AQ9NYA3 693 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 ABCC8Q09428 1581 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 DCDC2CA8MYV0 355 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 GMNNO75496 209 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 BAG4O95429 457 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PSMA5P28066 241 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 MAP3K7CLP57077 242 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 KSR2Q6VAB6 950 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 DTNBP1Q96EV8 351 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 IMPG2Q9BZV3 1241 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 ABCA4P78363 2273 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 OTOFQ9HC10 1997 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 IGHMBP2P38935 993 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 RSPH3Q86UC2 560 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 A0A087WZG4 1122 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 USO1O60763 962 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 SLC4A3P48751 1232 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 LCA5Q86VQ0 697 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF397Q8NF99 534 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 FLAD1Q8NFF5 587 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 NUP133Q8WUM0 1156 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 GBP3Q9H0R5 595 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 DIAPH1O60610 1272 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 FGFR1OPO95684 399 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RFC4P35249 363 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 GBP6Q6ZN66 633 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC83Q8IWF9 413 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ATRIPQ8WXE1 791 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 PUS7Q96PZ0 661 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 GIPC1O14908 333 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC15Q0P6D6 951 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 NSMCE1Q8WV22 266 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RABGGTAQ92696 567 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 GDPD2Q9HCC8 539 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 POTEB2H3BUK9 544 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ZEB2O60315 1214 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 EFCAB14O75071 495 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CCNB2O95067 398 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CFAP58Q5T655 872 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 NLRP13Q86W25 1043 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ANKS4BQ8N8V4 417 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 JMYQ8N9B5 988 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF692Q9BU19 519 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ANO2Q9NQ90 1003 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 GPR162Q16538 588 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 SKA1Q96BD8 255 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 TACC1O75410 805 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 TATP17735 454 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ZC3H15Q8WU90 426 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 SLC7A5P2Q9GIP4 190 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RAB23Q9ULC3 237 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 GCOM1H8Y6P7 765 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 KINO60870 393 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 MYZAPP0CAP1 466 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 SLC4A10Q6U841 1118 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CEP120Q8N960 986 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CEP131Q9UPN4 1083 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RABGAP1Q9Y3P9 1069 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 SCN3AQ9NY46 2000 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ATP2B1P20020 1258 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF354CQ86Y25 554 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CDAN1Q8IWY9 1227 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RPUSD2Q8IZ73 545 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF428Q96B54 188 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 LIMCH1Q9UPQ0 1083 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 LRRFIP2Q9Y608 721 aaKnown RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms