RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GOPCQ9HD26 462 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 FSD2A1L4K1 749 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 IFIT3O14879 490 aaKnown RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 FCHSD2O94868 740 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 MCM3P25205 808 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 CDAN1Q8IWY9 1227 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 TCP11L2Q8N4U5 519 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 TTC21BQ7Z4L5 1316 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 SMARCC2Q8TAQ2 1214 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 DENND4BO75064 1496 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 F8W031 263 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 ARID5AQ03989 594 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 ZCRB1Q8TBF4 217 aaKnown RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 GLRX3O76003 335 aaKnown RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 PDE3AQ14432 1141 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 IFI16Q16666 785 aaKnown RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 ELMSAN1Q6PJG2 1045 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 FAM200AQ8TCP9 573 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 CDCA7Q9BWT1 371 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 FIBPO43427 364 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 UQCRFS1P1P0C7P4 283 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 KRT13P13646 458 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 SPATA24Q86W54 205 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 HAUS7Q99871 368 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 TCERG1LQ5VWI1 586 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 LDHAL6AQ6ZMR3 332 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 CAMSAP2Q08AD1 1489 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 SMC1AQ14683 1233 aaKnown RBP7.04□□□□□ -1.28
SCN1A-217ENST00000637988 PPP1R14CQ8TAE6 165 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 KIAA1524Q8TCG1 905 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 CFAP57Q96MR6 1250 aa7.04□□□□□ -1.28
SCN1A-217ENST00000637988 H7C1D1 291 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 USO1O60763 962 aaKnown RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 ANKRD2Q9GZV1 360 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 DBF4Q9UBU7 674 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 NOP56O00567 594 aaKnown RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 JAKMIP1Q96N16 626 aaKnown RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 PICALMQ13492 652 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 GSDMBQ8TAX9 411 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 GNAQP50148 359 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 PANK1Q8TE04 598 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 SMCR8Q8TEV9 937 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 BRD4O60885 1362 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 LUZP1Q86V48 1076 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 GABPB2Q8TAK5 448 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 ARHGEF10LQ9HCE6 1279 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 STX8Q9UNK0 236 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 HMGB1P1B2RPK0 211 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 ARHGAP29Q52LW3 1261 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 WDR63Q8IWG1 891 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 CCDC113Q9H0I3 377 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 IFFO1Q0D2I5 559 aa7.03□□□□□ -1.28
SCN1A-217ENST00000637988 BBXQ8WY36 941 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-217ENST00000637988 SNRPA1P09661 255 aaKnown RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 CAVIN1Q6NZI2 390 aaKnown RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 MAP9Q49MG5 647 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 CCDC40Q4G0X9 1142 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 NIM1KQ8IY84 436 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 C8orf76Q96K31 380 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 UPF3BQ9BZI7 483 aaKnown RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 C1orf115Q9H7X2 142 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 FAM212AQ96EL1 285 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 PLB1Q6P1J6 1458 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 PDE4AP27815 886 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 TAF3Q5VWG9 929 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 NIP7Q9Y221 180 aaKnown RBP eCLIP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 CD2APQ9Y5K6 639 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 CSADQ9Y600 493 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 TNRQ92752 1358 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 IFIT1BQ5T764 474 aaKnown RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 KRT23Q9C075 422 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 MAST3O60307 1309 aa7.02□□□□□ -1.29
SCN1A-217ENST00000637988 NBPF7P0C2Y1 421 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 NASPP49321 788 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 EXOSC9Q06265 439 aaKnown RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 PRKRIP1Q9H875 184 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-217ENST00000637988 ZNF644Q9H582 1327 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 ATP5J2-PTCD1G3V325 749 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 PABPC4Q13310 644 aaKnown RBP eCLIP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 UBE4AQ14139 1066 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 DUSP27Q5VZP5 1158 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 POLA1P09884 1462 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 BCAR3O75815 825 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 PRKCSHP14314 528 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 TMEM67Q5HYA8 995 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 DPH6Q7L8W6 267 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 NAA15Q9BXJ9 866 aaKnown RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 MAK16Q9BXY0 300 aaKnown RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 EXOC1Q9NV70 894 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 BACH1O14867 736 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 CNGA1P29973 690 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 KANK3Q6NY19 840 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 TMTC2Q8N394 836 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 SIRT1Q96EB6 747 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 LRRC9Q6ZRR7 1453 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 MAGI1Q96QZ7 1491 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 GOLGA8AA7E2F4 631 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 GOLGA8BA8MQT2 603 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 CALM1P0DP23 149 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 CALM2P0DP24 149 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 526.9 ms