RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 R3HDM1Q15032 1099 aaKnown RBP22.57■■□□□ 1.2
CLN3-263ENST00000637871 RC3H1Q5TC82 1133 aaKnown RBP22.57■■□□□ 1.2
CLN3-263ENST00000637871 PDGFDQ9GZP0 370 aaPredicted RBP22.57■■□□□ 1.2
CLN3-263ENST00000637871 PDE1AP54750 535 aa22.56■■□□□ 1.2
CLN3-263ENST00000637871 MTX1Q13505 466 aa22.56■■□□□ 1.2
CLN3-263ENST00000637871 PDIA6Q15084 440 aa22.56■■□□□ 1.2
CLN3-263ENST00000637871 HSCBQ8IWL3 235 aa22.56■■□□□ 1.2
CLN3-263ENST00000637871 STAP2Q9UGK3 403 aa22.56■■□□□ 1.2
CLN3-263ENST00000637871 ADCY9O60503 1353 aa22.55■■□□□ 1.2
CLN3-263ENST00000637871 PNPLA7Q6ZV29 1317 aa22.55■■□□□ 1.2
CLN3-263ENST00000637871 C16orf71Q8IYS4 520 aaPredicted RBP22.55■■□□□ 1.2
CLN3-263ENST00000637871 LINS1Q8NG48 757 aa22.55■■□□□ 1.2
CLN3-263ENST00000637871 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.54■■□□□ 1.2
CLN3-263ENST00000637871 PNMA6EA0A0J9YXQ4 647 aa22.54■■□□□ 1.2
CLN3-263ENST00000637871 QSER1Q2KHR3 1735 aa22.54■■□□□ 1.2
CLN3-263ENST00000637871 RTCBQ9Y3I0 505 aaKnown RBP22.54■■□□□ 1.2
CLN3-263ENST00000637871 COL15A1P39059 1388 aa22.54■■□□□ 1.2
CLN3-263ENST00000637871 RPS6KA4O75676 772 aa22.53■■□□□ 1.2
CLN3-263ENST00000637871 IL27Q8NEV9 243 aa22.53■■□□□ 1.2
CLN3-263ENST00000637871 SALL3Q9BXA9 1300 aa22.53■■□□□ 1.2
CLN3-263ENST00000637871 REC8O95072 547 aa22.53■■□□□ 1.2
CLN3-263ENST00000637871 ERBB4Q15303 1308 aa22.52■■□□□ 1.2
CLN3-263ENST00000637871 SMARCA5O60264 1052 aaPredicted RBP22.52■■□□□ 1.2
CLN3-263ENST00000637871 SDSP20132 328 aa22.52■■□□□ 1.2
CLN3-263ENST00000637871 LRP10Q7Z4F1 713 aa22.52■■□□□ 1.2
CLN3-263ENST00000637871 KIF1BPQ96EK5 621 aa22.52■■□□□ 1.2
CLN3-263ENST00000637871 EXOC6BQ9Y2D4 811 aa22.52■■□□□ 1.2
CLN3-263ENST00000637871 MAP3K2Q9Y2U5 619 aa22.52■■□□□ 1.2
CLN3-263ENST00000637871 UTYO14607 1347 aa22.51■■□□□ 1.19
CLN3-263ENST00000637871 EIF5P55010 431 aaKnown RBP22.51■■□□□ 1.19
CLN3-263ENST00000637871 NFKBIBQ15653 356 aa22.51■■□□□ 1.19
CLN3-263ENST00000637871 PPP1R42Q7Z4L9 355 aa22.51■■□□□ 1.19
CLN3-263ENST00000637871 COL23A1Q86Y22 540 aaPredicted RBP22.51■■□□□ 1.19
CLN3-263ENST00000637871 ARXQ96QS3 562 aa22.51■■□□□ 1.19
CLN3-263ENST00000637871 EPB41L2O43491 1005 aaKnown RBP22.5■■□□□ 1.19
CLN3-263ENST00000637871 MX1P20591 662 aa22.5■■□□□ 1.19
CLN3-263ENST00000637871 IL6STP40189 918 aaPredicted RBP22.5■■□□□ 1.19
CLN3-263ENST00000637871 ARHGEF1Q92888 912 aaKnown RBP22.5■■□□□ 1.19
CLN3-263ENST00000637871 C9orf78Q9NZ63 289 aaPredicted RBP22.5■■□□□ 1.19
CLN3-263ENST00000637871 SRP68Q9UHB9 627 aaKnown RBP22.5■■□□□ 1.19
CLN3-263ENST00000637871 CASZ1Q86V15 1759 aa22.5■■□□□ 1.19
CLN3-263ENST00000637871 SSFA2P28290 1259 aa22.49■■□□□ 1.19
CLN3-263ENST00000637871 NEXNQ0ZGT2 675 aa22.49■■□□□ 1.19
CLN3-263ENST00000637871 TBC1D2BQ9UPU7 963 aa22.49■■□□□ 1.19
CLN3-263ENST00000637871 APBB1O00213 710 aa22.49■■□□□ 1.19
CLN3-263ENST00000637871 AIMP1Q12904 312 aaKnown RBP22.49■■□□□ 1.19
CLN3-263ENST00000637871 TTLL7Q6ZT98 887 aa22.49■■□□□ 1.19
CLN3-263ENST00000637871 ERC1Q8IUD2 1116 aa22.49■■□□□ 1.19
CLN3-263ENST00000637871 SRGAP3O43295 1099 aa22.48■■□□□ 1.19
CLN3-263ENST00000637871 TRAPPC3LQ5T215 181 aa22.48■■□□□ 1.19
CLN3-263ENST00000637871 OTUD7AQ8TE49 926 aaPredicted RBP22.48■■□□□ 1.19
CLN3-263ENST00000637871 ANTXR1Q9H6X2 564 aa22.48■■□□□ 1.19
CLN3-263ENST00000637871 SCN7AQ01118 1682 aa22.47■■□□□ 1.19
CLN3-263ENST00000637871 SURF6O75683 361 aaKnown RBP22.47■■□□□ 1.19
CLN3-263ENST00000637871 NBPF7P0C2Y1 421 aaPredicted RBP22.47■■□□□ 1.19
CLN3-263ENST00000637871 XAGE3Q8WTP9 111 aa22.47■■□□□ 1.19
CLN3-263ENST00000637871 BCORQ6W2J9 1755 aa22.47■■□□□ 1.19
CLN3-263ENST00000637871 ERC2O15083 957 aa22.46■■□□□ 1.19
CLN3-263ENST00000637871 RABEP1Q15276 862 aa22.46■■□□□ 1.19
CLN3-263ENST00000637871 USP26Q9BXU7 913 aa22.46■■□□□ 1.19
CLN3-263ENST00000637871 COPS6Q7L5N1 327 aa22.46■■□□□ 1.19
CLN3-263ENST00000637871 RIC3Q7Z5B4 369 aa22.46■■□□□ 1.19
CLN3-263ENST00000637871 DZIP3Q86Y13 1208 aaKnown RBP22.46■■□□□ 1.19
CLN3-263ENST00000637871 RHPN1Q8TCX5 695 aa22.46■■□□□ 1.19
CLN3-263ENST00000637871 GRM8O00222 908 aa22.45■■□□□ 1.18
CLN3-263ENST00000637871 HMGB2P26583 209 aaKnown RBP22.45■■□□□ 1.18
CLN3-263ENST00000637871 RFC4P35249 363 aa22.45■■□□□ 1.18
CLN3-263ENST00000637871 MSL1Q68DK7 614 aa22.45■■□□□ 1.18
CLN3-263ENST00000637871 CHMP5Q9NZZ3 219 aa22.45■■□□□ 1.18
CLN3-263ENST00000637871 USPL1Q5W0Q7 1092 aa22.44■■□□□ 1.18
CLN3-263ENST00000637871 METTL22Q9BUU2 404 aaPredicted RBP22.44■■□□□ 1.18
CLN3-263ENST00000637871 ZBTB3Q9H5J0 574 aa22.44■■□□□ 1.18
CLN3-263ENST00000637871 CIZ1Q9ULV3 898 aaPredicted RBP22.44■■□□□ 1.18
CLN3-263ENST00000637871 USP42Q9H9J4 1324 aaKnown RBP22.44■■□□□ 1.18
CLN3-263ENST00000637871 ADRA2BP18089 450 aa22.43■■□□□ 1.18
CLN3-263ENST00000637871 KIF2CQ99661 725 aa22.43■■□□□ 1.18
CLN3-263ENST00000637871 CAMTA2O94983 1202 aa22.42■■□□□ 1.18
CLN3-263ENST00000637871 ZBTB7AO95365 584 aa22.42■■□□□ 1.18
CLN3-263ENST00000637871 ANKRD13DQ6ZTN6 518 aa22.42■■□□□ 1.18
CLN3-263ENST00000637871 TTC41PQ6P2S7 1318 aa22.42■■□□□ 1.18
CLN3-263ENST00000637871 ARFGEF2Q9Y6D5 1785 aa22.41■■□□□ 1.18
CLN3-263ENST00000637871 A0A087WZG4 1122 aa22.41■■□□□ 1.18
CLN3-263ENST00000637871 HLFQ16534 295 aa22.41■■□□□ 1.18
CLN3-263ENST00000637871 KIF6Q6ZMV9 814 aa22.41■■□□□ 1.18
CLN3-263ENST00000637871 FLAD1Q8NFF5 587 aa22.41■■□□□ 1.18
CLN3-263ENST00000637871 BCL2L12Q9HB09 334 aa22.41■■□□□ 1.18
CLN3-263ENST00000637871 NARFQ9UHQ1 456 aa22.41■■□□□ 1.18
CLN3-263ENST00000637871 ZPR1O75312 459 aa22.4■■□□□ 1.18
CLN3-263ENST00000637871 GYS1P13807 737 aa22.4■■□□□ 1.18
CLN3-263ENST00000637871 CLASRPQ8N2M8 674 aaKnown RBP22.39■■□□□ 1.18
CLN3-263ENST00000637871 GPATCH3Q96I76 525 aa22.39■■□□□ 1.18
CLN3-263ENST00000637871 NUP98P52948 1817 aa22.39■■□□□ 1.18
CLN3-263ENST00000637871 MAP3K15Q6ZN16 1313 aa22.39■■□□□ 1.17
CLN3-263ENST00000637871 MCCP23508 829 aa22.39■■□□□ 1.17
CLN3-263ENST00000637871 SLKQ9H2G2 1235 aaPredicted RBP22.39■■□□□ 1.17
CLN3-263ENST00000637871 NEURL1BA8MQ27 555 aa22.38■■□□□ 1.17
CLN3-263ENST00000637871 K7ELQ4 463 aaPredicted RBP22.38■■□□□ 1.17
CLN3-263ENST00000637871 PLBD2Q8NHP8 589 aa22.38■■□□□ 1.17
CLN3-263ENST00000637871 OS9Q13438 667 aaPredicted RBP22.37■■□□□ 1.17
CLN3-263ENST00000637871 GCKRQ14397 625 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms