RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 AIDAQ96BJ3 306 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 TMOD4Q9NZQ9 345 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 BCAP29Q9UHQ4 241 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 CCT6AP40227 531 aaKnown RBP6.84□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC125Q86Z20 511 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 CKAP2LQ8IYA6 745 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 GABPAQ06546 454 aa6.84□□□□□ -1.32
SCN1A-212ENST00000636194 RIPK4P57078 832 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 RILPL1Q5EBL4 403 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 TMC2Q8TDI7 906 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 EVI5LQ96CN4 794 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 CCDC114Q96M63 670 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 KRT83P78385 493 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 NFKBIL1Q9UBC1 381 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 TBCAO75347 108 aaKnown RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 GNAI2P04899 355 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 PALM2Q8IXS6 379 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 EIF2AQ9BY44 585 aaKnown RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 ELL2O00472 640 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 BRDTQ58F21 947 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 SIRT1Q96EB6 747 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 CSRNP2Q9H175 543 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 HLA-DOAP06340 250 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 PTPN14Q15678 1187 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 KANK3Q6NY19 840 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 RPGRQ92834 1020 aaKnown RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 GOLGA6CA6NDK9 693 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 GOLGA6BA6NDN3 693 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 CETN3O15182 167 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 GOLGA6DP0CG33 693 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 RNF214Q8ND24 703 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 RNF41Q9H4P4 317 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 GOLGA6AQ9NYA3 693 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 STARD3NLO95772 234 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 FKBP4Q02790 459 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 NONOQ15233 471 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 LARP1BQ659C4 914 aaKnown RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 NSMCE1Q8WV22 266 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 C16orf45Q96MC5 204 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 RBM42Q9BTD8 480 aaKnown RBP6.83□□□□□ -1.32
SCN1A-212ENST00000636194 KRT23Q9C075 422 aa6.83□□□□□ -1.32
SCN1A-212ENST00000636194 RPGRIP1Q96KN7 1286 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 HDAC9Q9UKV0 1011 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 COG6Q9Y2V7 657 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 RAB3GAP2Q9H2M9 1393 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 KIF11P52732 1056 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 INF2Q27J81 1249 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 SDCCAG8Q86SQ7 713 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 LMBR1Q8WVP7 490 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 RSRC1Q96IZ7 334 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 NUP62CLQ9H1M0 184 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 RBM27Q9P2N5 1060 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 GPR161Q8N6U8 529 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 PNISRQ8TF01 805 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 NACA2Q9H009 215 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 PPP6R1Q9UPN7 881 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 DAPK3O43293 454 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 TOP1P11387 765 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 TATP17735 454 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 ATP11AP98196 1134 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 SPTY2D1Q68D10 685 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 CATIPQ7Z7H3 387 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 NEMFO60524 1076 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 IRX4P78413 519 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 TCERG1LQ5VWI1 586 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 JADE2Q9NQC1 790 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 GSDMDP57764 484 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 CLUL1Q15846 466 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 LCA5Q86VQ0 697 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 ANKRD24Q8TF21 1146 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 SPG7Q9UQ90 795 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 CCDC194A0A1B0GVG4 234 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 HNRNPCL2B2RXH8 293 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 HNRNPCL1O60812 293 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 PDE6AP16499 860 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 CCT4P50991 539 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 CABP4P57796 275 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 RAB11FIP4Q86YS3 637 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 POLE3Q9NRF9 147 aa6.82□□□□□ -1.32
SCN1A-212ENST00000636194 RRP7AQ9Y3A4 280 aaKnown RBP6.82□□□□□ -1.32
SCN1A-212ENST00000636194 KRT13P13646 458 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 ZNF444Q8N0Y2 327 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-212ENST00000636194 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCN1A-212ENST00000636194 SURF6O75683 361 aaKnown RBP6.81□□□□□ -1.32
SCN1A-212ENST00000636194 NEK4P51957 841 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 LRRC43Q8N309 656 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 SPATS2LQ9NUQ6 558 aaKnown RBP6.81□□□□□ -1.32
SCN1A-212ENST00000636194 ITM2BQ9Y287 266 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 BLOC1S2Q6QNY1 142 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 BICDL1Q6ZP65 573 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 CFAP36Q96G28 342 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 PFDN6O15212 129 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 RRP1P56182 461 aaKnown RBP6.81□□□□□ -1.32
SCN1A-212ENST00000636194 ARHGAP24Q8N264 748 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 ACRBPQ8NEB7 543 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 FAM177BA6PVY3 158 aa6.81□□□□□ -1.32
SCN1A-212ENST00000636194 KIFC2Q96AC6 838 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms