RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 RPGRQ92834 1020 aaKnown RBP20.18■□□□□ 0.82
LINC00339-207ENST00000634712 NLRP3Q96P20 1036 aa20.18■□□□□ 0.82
LINC00339-207ENST00000634712 SOGA3Q5TF21 947 aa20.17■□□□□ 0.82
LINC00339-207ENST00000634712 RNF123Q5XPI4 1314 aa20.17■□□□□ 0.82
LINC00339-207ENST00000634712 ABCC12Q96J65 1359 aa20.16■□□□□ 0.82
LINC00339-207ENST00000634712 ATP5J2-PTCD1G3V325 749 aa20.16■□□□□ 0.82
LINC00339-207ENST00000634712 TCERG1O14776 1098 aaKnown RBP20.16■□□□□ 0.82
LINC00339-207ENST00000634712 EXOSC9Q06265 439 aaKnown RBP20.16■□□□□ 0.82
LINC00339-207ENST00000634712 ZNF526Q8TF50 670 aaPredicted RBP20.16■□□□□ 0.82
LINC00339-207ENST00000634712 RNF181Q9P0P0 153 aa20.16■□□□□ 0.82
LINC00339-207ENST00000634712 COL11A2P13942 1736 aaPredicted RBP20.16■□□□□ 0.82
LINC00339-207ENST00000634712 RASSF7Q02833 373 aa20.15■□□□□ 0.82
LINC00339-207ENST00000634712 RBM17Q96I25 401 aaKnown RBP20.15■□□□□ 0.82
LINC00339-207ENST00000634712 GPBP1L1Q9HC44 474 aaPredicted RBP20.15■□□□□ 0.82
LINC00339-207ENST00000634712 SLC4A2P04920 1241 aa20.14■□□□□ 0.81
LINC00339-207ENST00000634712 CRY2Q49AN0 593 aa20.14■□□□□ 0.81
LINC00339-207ENST00000634712 SLC10A5Q5PT55 438 aa20.14■□□□□ 0.81
LINC00339-207ENST00000634712 ISCA1Q9BUE6 129 aa20.14■□□□□ 0.81
LINC00339-207ENST00000634712 SPINK5Q9NQ38 1064 aaPredicted RBP20.14■□□□□ 0.81
LINC00339-207ENST00000634712 SH3TC1Q8TE82 1336 aa20.14■□□□□ 0.81
LINC00339-207ENST00000634712 LMNB1P20700 586 aa20.13■□□□□ 0.81
LINC00339-207ENST00000634712 ZNF428Q96B54 188 aa20.13■□□□□ 0.81
LINC00339-207ENST00000634712 ADCY9O60503 1353 aa20.13■□□□□ 0.81
LINC00339-207ENST00000634712 ANKRD36CQ5JPF3 1778 aa20.13■□□□□ 0.81
LINC00339-207ENST00000634712 RIC1Q4ADV7 1423 aa20.13■□□□□ 0.81
LINC00339-207ENST00000634712 VAMP4O75379 141 aa20.12■□□□□ 0.81
LINC00339-207ENST00000634712 MYD88Q99836 296 aa20.12■□□□□ 0.81
LINC00339-207ENST00000634712 SLX4Q8IY92 1834 aa20.11■□□□□ 0.81
LINC00339-207ENST00000634712 HCLS1P14317 486 aaPredicted RBP20.11■□□□□ 0.81
LINC00339-207ENST00000634712 TRIM28Q13263 835 aaKnown RBP20.11■□□□□ 0.81
LINC00339-207ENST00000634712 CCDC93Q567U6 631 aa20.11■□□□□ 0.81
LINC00339-207ENST00000634712 NFKBIEO00221 500 aa20.1■□□□□ 0.81
LINC00339-207ENST00000634712 HOXA10P31260 410 aaPredicted RBP20.1■□□□□ 0.81
LINC00339-207ENST00000634712 KSR2Q6VAB6 950 aa20.1■□□□□ 0.81
LINC00339-207ENST00000634712 SYNE4Q8N205 404 aa20.1■□□□□ 0.81
LINC00339-207ENST00000634712 METTL22Q9BUU2 404 aaPredicted RBP20.1■□□□□ 0.81
LINC00339-207ENST00000634712 TMX4Q9H1E5 349 aaPredicted RBP20.1■□□□□ 0.81
LINC00339-207ENST00000634712 TAOK3Q9H2K8 898 aa20.1■□□□□ 0.81
LINC00339-207ENST00000634712 MAP3K2Q9Y2U5 619 aa20.1■□□□□ 0.81
LINC00339-207ENST00000634712 CACNA1SQ13698 1873 aa20.1■□□□□ 0.81
LINC00339-207ENST00000634712 ZNF521Q96K83 1311 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 PI4KAP2A4QPH2 592 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 NEXNQ0ZGT2 675 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 RTKN2Q8IZC4 609 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 PI4KAP1Q8N8J0 262 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 C7orf43Q8WVR3 580 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 FAM89AQ96GI7 184 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 CRAMP1Q96RY5 1269 aa20.09■□□□□ 0.81
LINC00339-207ENST00000634712 TNRC6CQ9HCJ0 1690 aaKnown RBP20.09■□□□□ 0.81
LINC00339-207ENST00000634712 E9PSI1 815 aa20.08■□□□□ 0.81
LINC00339-207ENST00000634712 RTL5Q5HYW3 569 aaPredicted RBP20.08■□□□□ 0.81
LINC00339-207ENST00000634712 C3orf67Q6ZVT6 689 aa20.08■□□□□ 0.81
LINC00339-207ENST00000634712 MIER1Q8N108 512 aa20.08■□□□□ 0.81
LINC00339-207ENST00000634712 CCDC191Q8NCU4 936 aa20.08■□□□□ 0.81
LINC00339-207ENST00000634712 HSP90B1P14625 803 aaKnown RBP20.08■□□□□ 0.8
LINC00339-207ENST00000634712 DDX46Q7L014 1031 aaKnown RBP20.08■□□□□ 0.8
LINC00339-207ENST00000634712 G2E3Q7L622 706 aa20.08■□□□□ 0.8
LINC00339-207ENST00000634712 CWC25Q9NXE8 425 aaPredicted RBP20.08■□□□□ 0.8
LINC00339-207ENST00000634712 ARFGEF2Q9Y6D5 1785 aa20.08■□□□□ 0.8
LINC00339-207ENST00000634712 SBF1O95248 1867 aa20.07■□□□□ 0.8
LINC00339-207ENST00000634712 LTBP3Q9NS15 1303 aa20.07■□□□□ 0.8
LINC00339-207ENST00000634712 FLIIQ13045 1269 aa20.07■□□□□ 0.8
LINC00339-207ENST00000634712 FKBP5Q13451 457 aaPredicted RBP20.07■□□□□ 0.8
LINC00339-207ENST00000634712 CC2D2BQ6DHV5 1058 aa20.07■□□□□ 0.8
LINC00339-207ENST00000634712 ZBTB38Q8NAP3 1195 aaPredicted RBP20.07■□□□□ 0.8
LINC00339-207ENST00000634712 IRS4O14654 1257 aaPredicted RBP20.06■□□□□ 0.8
LINC00339-207ENST00000634712 PPEF1O14829 653 aaPredicted RBP20.06■□□□□ 0.8
LINC00339-207ENST00000634712 KDM2BQ8NHM5 1336 aa20.05■□□□□ 0.8
LINC00339-207ENST00000634712 ZC3H4Q9UPT8 1303 aaKnown RBP20.05■□□□□ 0.8
LINC00339-207ENST00000634712 PRELPP51888 382 aa20.05■□□□□ 0.8
LINC00339-207ENST00000634712 FKBP4Q02790 459 aaKnown RBP eCLIP20.05■□□□□ 0.8
LINC00339-207ENST00000634712 OLFM4Q6UX06 510 aa20.05■□□□□ 0.8
LINC00339-207ENST00000634712 FER1L6Q2WGJ9 1857 aa20.04■□□□□ 0.8
LINC00339-207ENST00000634712 BBOX1O75936 387 aa20.04■□□□□ 0.8
LINC00339-207ENST00000634712 GRIPAP1Q4V328 841 aa20.04■□□□□ 0.8
LINC00339-207ENST00000634712 ABCC4O15439 1325 aa20.03■□□□□ 0.8
LINC00339-207ENST00000634712 CACNA1FO60840 1977 aa20.03■□□□□ 0.8
LINC00339-207ENST00000634712 PCCAP05165 728 aaPredicted RBP20.03■□□□□ 0.8
LINC00339-207ENST00000634712 SLFN5Q08AF3 891 aa20.03■□□□□ 0.8
LINC00339-207ENST00000634712 CCDC88AQ3V6T2 1871 aa20.03■□□□□ 0.8
LINC00339-207ENST00000634712 DPY19L2Q6NUT2 758 aa20.02■□□□□ 0.8
LINC00339-207ENST00000634712 DNAAF4Q8WXU2 420 aa20.02■□□□□ 0.8
LINC00339-207ENST00000634712 GRAPQ13588 217 aa20.01■□□□□ 0.79
LINC00339-207ENST00000634712 SF3B3Q15393 1217 aaKnown RBP20.01■□□□□ 0.79
LINC00339-207ENST00000634712 GRAPLQ8TC17 118 aaPredicted RBP20.01■□□□□ 0.79
LINC00339-207ENST00000634712 JARID2Q92833 1246 aaPredicted RBP20.01■□□□□ 0.79
LINC00339-207ENST00000634712 ZNF277Q9NRM2 450 aaPredicted RBP20.01■□□□□ 0.79
LINC00339-207ENST00000634712 ATP6V0A2Q9Y487 856 aa20.01■□□□□ 0.79
LINC00339-207ENST00000634712 IGKV5-2P06315 115 aa20■□□□□ 0.79
LINC00339-207ENST00000634712 C1QTNF8P60827 252 aa20■□□□□ 0.79
LINC00339-207ENST00000634712 CDCA7LQ96GN5 454 aa20■□□□□ 0.79
LINC00339-207ENST00000634712 PSMD1Q99460 953 aa20■□□□□ 0.79
LINC00339-207ENST00000634712 GLTPD2A6NH11 291 aa19.99■□□□□ 0.79
LINC00339-207ENST00000634712 NEURL1BA8MQ27 555 aa19.99■□□□□ 0.79
LINC00339-207ENST00000634712 PDE8AO60658 829 aa19.99■□□□□ 0.79
LINC00339-207ENST00000634712 CWF19L2Q2TBE0 894 aaKnown RBP19.99■□□□□ 0.79
LINC00339-207ENST00000634712 C16orf71Q8IYS4 520 aaPredicted RBP19.99■□□□□ 0.79
LINC00339-207ENST00000634712 NMRK2Q9NPI5 230 aa19.99■□□□□ 0.79
LINC00339-207ENST00000634712 IARSP41252 1262 aaKnown RBP19.98■□□□□ 0.79
LINC00339-207ENST00000634712 TMC4Q7Z404 712 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms