RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CCDC39Q9UFE4 941 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 ZKSCAN5Q9Y2L8 839 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 ADAMTSL3P82987 1691 aa15.3■□□□□ 0.04
LINC00540-203ENST00000631321 JCADQ9P266 1359 aa15.3■□□□□ 0.04
LINC00540-203ENST00000631321 ST3GAL1Q11201 340 aa15.3■□□□□ 0.04
LINC00540-203ENST00000631321 NMIQ13287 307 aaPredicted RBP15.3■□□□□ 0.04
LINC00540-203ENST00000631321 GCKRQ14397 625 aa15.3■□□□□ 0.04
LINC00540-203ENST00000631321 UVSSAQ2YD98 709 aa15.3■□□□□ 0.04
LINC00540-203ENST00000631321 FOXD4L6Q3SYB3 417 aaPredicted RBP15.3■□□□□ 0.04
LINC00540-203ENST00000631321 FOXD4L3Q6VB84 417 aaPredicted RBP15.3■□□□□ 0.04
LINC00540-203ENST00000631321 RIC3Q7Z5B4 369 aa15.3■□□□□ 0.04
LINC00540-203ENST00000631321 LARP6Q9BRS8 491 aaKnown RBP15.3■□□□□ 0.04
LINC00540-203ENST00000631321 MTMR6Q9Y217 621 aa15.3■□□□□ 0.04
LINC00540-203ENST00000631321 GJB2P29033 226 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 AIMP1Q12904 312 aaKnown RBP15.29■□□□□ 0.04
LINC00540-203ENST00000631321 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.29■□□□□ 0.04
LINC00540-203ENST00000631321 CCDC83Q8IWF9 413 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 FAM227BQ96M60 508 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 METTL22Q9BUU2 404 aaPredicted RBP15.29■□□□□ 0.04
LINC00540-203ENST00000631321 ALDH8A1Q9H2A2 487 aaPredicted RBP15.29■□□□□ 0.04
LINC00540-203ENST00000631321 COL15A1P39059 1388 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 MED23Q9ULK4 1368 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 PDIA4P13667 645 aaKnown RBP15.29■□□□□ 0.04
LINC00540-203ENST00000631321 PHKG2P15735 406 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 TERF1P54274 439 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 NEXNQ0ZGT2 675 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 LRP10Q7Z4F1 713 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 RNF214Q8ND24 703 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 RAPGEF4Q8WZA2 1011 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 CCDC8Q9H0W5 538 aaPredicted RBP15.29■□□□□ 0.04
LINC00540-203ENST00000631321 TLR7Q9NYK1 1049 aaKnown RBP15.29■□□□□ 0.04
LINC00540-203ENST00000631321 ALS2Q96Q42 1657 aa15.29■□□□□ 0.04
LINC00540-203ENST00000631321 PSMA5P28066 241 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 CSPP1Q1MSJ5 1256 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 SLC27A2O14975 620 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 SLC39A6Q13433 755 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 ME3Q16798 604 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 XAGE3Q8WTP9 111 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 COPRSQ9NQ92 184 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 SCN11AQ9UI33 1791 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 C5P01031 1676 aa15.28■□□□□ 0.04
LINC00540-203ENST00000631321 A0A0D9SFI3 127 aa15.27■□□□□ 0.03
LINC00540-203ENST00000631321 TATP17735 454 aaPredicted RBP15.27■□□□□ 0.03
LINC00540-203ENST00000631321 TSGA10IPQ3SY00 556 aa15.27■□□□□ 0.03
LINC00540-203ENST00000631321 EPHA10Q5JZY3 1008 aa15.27■□□□□ 0.03
LINC00540-203ENST00000631321 C19orf44Q9H6X5 657 aa15.27■□□□□ 0.03
LINC00540-203ENST00000631321 COPS6Q7L5N1 327 aa15.26■□□□□ 0.03
LINC00540-203ENST00000631321 PROSER2Q86WR7 435 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-203ENST00000631321 TPCN1Q9ULQ1 816 aa15.26■□□□□ 0.03
LINC00540-203ENST00000631321 RFX5P48382 616 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-203ENST00000631321 ZC3H6P61129 1189 aaKnown RBP15.26■□□□□ 0.03
LINC00540-203ENST00000631321 RNF20Q5VTR2 975 aa15.26■□□□□ 0.03
LINC00540-203ENST00000631321 ZNF496Q96IT1 587 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-203ENST00000631321 FSD1Q9BTV5 496 aa15.26■□□□□ 0.03
LINC00540-203ENST00000631321 BOLA2Q9H3K6 86 aa15.26■□□□□ 0.03
LINC00540-203ENST00000631321 MEGF6O75095 1541 aa15.26■□□□□ 0.03
LINC00540-203ENST00000631321 RFX7Q2KHR2 1363 aa15.26■□□□□ 0.03
LINC00540-203ENST00000631321 RGPD5Q99666 1765 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 ANKRD1Q15327 319 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 RABL6Q3YEC7 729 aaPredicted RBP15.25■□□□□ 0.03
LINC00540-203ENST00000631321 IFNL2Q8IZJ0 200 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 NFATC2IPQ8NCF5 419 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 MYD88Q99836 296 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 SIL1Q9H173 461 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 NLRP2Q9NX02 1062 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 HMG20BQ9P0W2 317 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 SNRPA1P09661 255 aaKnown RBP15.25■□□□□ 0.03
LINC00540-203ENST00000631321 MYL6BP14649 208 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 ATP5JP18859 108 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 KCNJ4P48050 445 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 ANKRD13DQ6ZTN6 518 aa15.25■□□□□ 0.03
LINC00540-203ENST00000631321 USPL1Q5W0Q7 1092 aa15.24■□□□□ 0.03
LINC00540-203ENST00000631321 KLHDC4Q8TBB5 520 aa15.24■□□□□ 0.03
LINC00540-203ENST00000631321 FUCA2Q9BTY2 467 aa15.24■□□□□ 0.03
LINC00540-203ENST00000631321 TCHHQ07283 1943 aa15.24■□□□□ 0.03
LINC00540-203ENST00000631321 FIBPO43427 364 aa15.24■□□□□ 0.03
LINC00540-203ENST00000631321 RPS6KB1P23443 525 aa15.24■□□□□ 0.03
LINC00540-203ENST00000631321 DNM1Q05193 864 aaKnown RBP15.24■□□□□ 0.03
LINC00540-203ENST00000631321 DCAF5Q96JK2 942 aa15.24■□□□□ 0.03
LINC00540-203ENST00000631321 TAF5LO75529 589 aa15.23■□□□□ 0.03
LINC00540-203ENST00000631321 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
LINC00540-203ENST00000631321 PTPN12Q05209 780 aaKnown RBP15.23■□□□□ 0.03
LINC00540-203ENST00000631321 BLOC1S2Q6QNY1 142 aa15.23■□□□□ 0.03
LINC00540-203ENST00000631321 NECAB1Q8N987 351 aa15.23■□□□□ 0.03
LINC00540-203ENST00000631321 COL18A1P39060 1754 aa15.23■□□□□ 0.03
LINC00540-203ENST00000631321 ZNF589Q86UQ0 364 aaPredicted RBP15.23■□□□□ 0.03
LINC00540-203ENST00000631321 USP16Q9Y5T5 823 aa15.23■□□□□ 0.03
LINC00540-203ENST00000631321 RRP9O43818 475 aaKnown RBP15.22■□□□□ 0.03
LINC00540-203ENST00000631321 PDCP20941 246 aa15.22■□□□□ 0.03
LINC00540-203ENST00000631321 TNNI3KQ59H18 835 aa15.22■□□□□ 0.03
LINC00540-203ENST00000631321 FMNL2Q96PY5 1086 aa15.22■□□□□ 0.03
LINC00540-203ENST00000631321 DBNLQ9UJU6 430 aaKnown RBP15.22■□□□□ 0.03
LINC00540-203ENST00000631321 FPGT-TNNI3KV9GXZ4 949 aa15.22■□□□□ 0.03
LINC00540-203ENST00000631321 COL9A3Q14050 684 aaPredicted RBP15.22■□□□□ 0.03
LINC00540-203ENST00000631321 TOB2Q14106 344 aaPredicted RBP15.22■□□□□ 0.03
LINC00540-203ENST00000631321 DDX54Q8TDD1 881 aaKnown RBP15.22■□□□□ 0.03
LINC00540-203ENST00000631321 ELP1O95163 1332 aa15.21■□□□□ 0.03
LINC00540-203ENST00000631321 CYP27B1O15528 508 aa15.21■□□□□ 0.03
LINC00540-203ENST00000631321 LARP1BQ659C4 914 aaKnown RBP15.21■□□□□ 0.03
LINC00540-203ENST00000631321 TTC5Q8N0Z6 440 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms