RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 COL11A2P13942 1736 aaPredicted RBP26.52■■□□□ 1.84
CLN3-240ENST00000631023 SRGNP10124 158 aa26.51■■□□□ 1.83
CLN3-240ENST00000631023 KSR2Q6VAB6 950 aa26.51■■□□□ 1.83
CLN3-240ENST00000631023 ISCA1Q9BUE6 129 aa26.51■■□□□ 1.83
CLN3-240ENST00000631023 CACNA1SQ13698 1873 aa26.51■■□□□ 1.83
CLN3-240ENST00000631023 KLRG2A4D1S0 409 aaPredicted RBP26.5■■□□□ 1.83
CLN3-240ENST00000631023 TRIM28Q13263 835 aaKnown RBP26.5■■□□□ 1.83
CLN3-240ENST00000631023 MASTLQ96GX5 879 aa26.5■■□□□ 1.83
CLN3-240ENST00000631023 TRMT112Q9UI30 125 aaKnown RBP26.5■■□□□ 1.83
CLN3-240ENST00000631023 ATP5J2-PTCD1G3V325 749 aa26.5■■□□□ 1.83
CLN3-240ENST00000631023 STYK1Q6J9G0 422 aa26.5■■□□□ 1.83
CLN3-240ENST00000631023 TRMT2AQ8IZ69 625 aaKnown RBP26.5■■□□□ 1.83
CLN3-240ENST00000631023 PI4KAP2A4QPH2 592 aa26.49■■□□□ 1.83
CLN3-240ENST00000631023 FLIIQ13045 1269 aa26.49■■□□□ 1.83
CLN3-240ENST00000631023 G2E3Q7L622 706 aa26.49■■□□□ 1.83
CLN3-240ENST00000631023 PI4KAP1Q8N8J0 262 aa26.49■■□□□ 1.83
CLN3-240ENST00000631023 CNKSR1Q969H4 720 aa26.49■■□□□ 1.83
CLN3-240ENST00000631023 METTL22Q9BUU2 404 aaPredicted RBP26.49■■□□□ 1.83
CLN3-240ENST00000631023 MAP3K2Q9Y2U5 619 aa26.49■■□□□ 1.83
CLN3-240ENST00000631023 ABCC12Q96J65 1359 aa26.48■■□□□ 1.83
CLN3-240ENST00000631023 RIC1Q4ADV7 1423 aa26.47■■□□□ 1.83
CLN3-240ENST00000631023 NPR1P16066 1061 aa26.47■■□□□ 1.83
CLN3-240ENST00000631023 NEXNQ0ZGT2 675 aa26.47■■□□□ 1.83
CLN3-240ENST00000631023 FKBP5Q13451 457 aaPredicted RBP26.47■■□□□ 1.83
CLN3-240ENST00000631023 ZNF428Q96B54 188 aa26.47■■□□□ 1.83
CLN3-240ENST00000631023 MYD88Q99836 296 aa26.47■■□□□ 1.83
CLN3-240ENST00000631023 SH3TC1Q8TE82 1336 aa26.47■■□□□ 1.83
CLN3-240ENST00000631023 SLC10A5Q5PT55 438 aa26.46■■□□□ 1.83
CLN3-240ENST00000631023 ARHGAP27Q6ZUM4 889 aa26.46■■□□□ 1.83
CLN3-240ENST00000631023 NLRP3Q96P20 1036 aa26.46■■□□□ 1.83
CLN3-240ENST00000631023 SLX4Q8IY92 1834 aa26.45■■□□□ 1.82
CLN3-240ENST00000631023 TNRC6CQ9HCJ0 1690 aaKnown RBP26.45■■□□□ 1.82
CLN3-240ENST00000631023 YY1P25490 414 aa26.45■■□□□ 1.82
CLN3-240ENST00000631023 CCDC191Q8NCU4 936 aa26.45■■□□□ 1.82
CLN3-240ENST00000631023 ALDH1B1P30837 517 aa26.44■■□□□ 1.82
CLN3-240ENST00000631023 CRY2Q49AN0 593 aa26.44■■□□□ 1.82
CLN3-240ENST00000631023 ADCY9O60503 1353 aa26.44■■□□□ 1.82
CLN3-240ENST00000631023 CT47B1P0C2W7 299 aaPredicted RBP26.43■■□□□ 1.82
CLN3-240ENST00000631023 RPGRQ92834 1020 aaKnown RBP26.43■■□□□ 1.82
CLN3-240ENST00000631023 CWC25Q9NXE8 425 aaPredicted RBP26.42■■□□□ 1.82
CLN3-240ENST00000631023 FAM89AQ96GI7 184 aa26.41■■□□□ 1.82
CLN3-240ENST00000631023 LAMB2P55268 1798 aa26.41■■□□□ 1.82
CLN3-240ENST00000631023 HSP90B1P14625 803 aaKnown RBP26.4■■□□□ 1.82
CLN3-240ENST00000631023 PRPF40BQ6NWY9 871 aaKnown RBP26.4■■□□□ 1.82
CLN3-240ENST00000631023 SYNE4Q8N205 404 aa26.4■■□□□ 1.82
CLN3-240ENST00000631023 ZBTB38Q8NAP3 1195 aaPredicted RBP26.4■■□□□ 1.82
CLN3-240ENST00000631023 DNAAF4Q8WXU2 420 aa26.4■■□□□ 1.82
CLN3-240ENST00000631023 HCLS1P14317 486 aaPredicted RBP26.39■■□□□ 1.82
CLN3-240ENST00000631023 DDX60Q8IY21 1712 aaKnown RBP26.39■■□□□ 1.81
CLN3-240ENST00000631023 HOXA10P31260 410 aaPredicted RBP26.38■■□□□ 1.81
CLN3-240ENST00000631023 ALDH1L2Q3SY69 923 aa26.38■■□□□ 1.81
CLN3-240ENST00000631023 RBM17Q96I25 401 aaKnown RBP26.38■■□□□ 1.81
CLN3-240ENST00000631023 SBF1O95248 1867 aa26.38■■□□□ 1.81
CLN3-240ENST00000631023 CCDC88AQ3V6T2 1871 aa26.38■■□□□ 1.81
CLN3-240ENST00000631023 C21orf2O43822 256 aa26.37■■□□□ 1.81
CLN3-240ENST00000631023 IGKV5-2P06315 115 aa26.37■■□□□ 1.81
CLN3-240ENST00000631023 RTL5Q5HYW3 569 aaPredicted RBP26.37■■□□□ 1.81
CLN3-240ENST00000631023 SOGA3Q5TF21 947 aa26.37■■□□□ 1.81
CLN3-240ENST00000631023 ZBED9Q6R2W3 1325 aa26.37■■□□□ 1.81
CLN3-240ENST00000631023 PCCAP05165 728 aaPredicted RBP26.37■■□□□ 1.81
CLN3-240ENST00000631023 SSH1Q8WYL5 1049 aa26.37■■□□□ 1.81
CLN3-240ENST00000631023 CRAMP1Q96RY5 1269 aa26.37■■□□□ 1.81
CLN3-240ENST00000631023 NEURL1BA8MQ27 555 aa26.36■■□□□ 1.81
CLN3-240ENST00000631023 IRS4O14654 1257 aaPredicted RBP26.36■■□□□ 1.81
CLN3-240ENST00000631023 C3orf67Q6ZVT6 689 aa26.36■■□□□ 1.81
CLN3-240ENST00000631023 MRPL50Q8N5N7 158 aaKnown RBP26.36■■□□□ 1.81
CLN3-240ENST00000631023 ZNF219Q9P2Y4 722 aaPredicted RBP26.36■■□□□ 1.81
CLN3-240ENST00000631023 FER1L6Q2WGJ9 1857 aa26.36■■□□□ 1.81
CLN3-240ENST00000631023 LINS1Q8NG48 757 aa26.35■■□□□ 1.81
CLN3-240ENST00000631023 CWF19L2Q2TBE0 894 aaKnown RBP26.34■■□□□ 1.81
CLN3-240ENST00000631023 MYH3P11055 1940 aa26.34■■□□□ 1.81
CLN3-240ENST00000631023 SMC4Q9NTJ3 1288 aa26.33■■□□□ 1.81
CLN3-240ENST00000631023 F6X3S4 739 aa26.33■■□□□ 1.8
CLN3-240ENST00000631023 DDX46Q7L014 1031 aaKnown RBP26.33■■□□□ 1.8
CLN3-240ENST00000631023 PTPRCP08575 1304 aa26.32■■□□□ 1.8
CLN3-240ENST00000631023 BCL2L13Q9BXK5 485 aa26.32■■□□□ 1.8
CLN3-240ENST00000631023 GCKRQ14397 625 aa26.31■■□□□ 1.8
CLN3-240ENST00000631023 SF3B3Q15393 1217 aaKnown RBP26.31■■□□□ 1.8
CLN3-240ENST00000631023 C7orf43Q8WVR3 580 aa26.31■■□□□ 1.8
CLN3-240ENST00000631023 TAF1P21675 1872 aa26.31■■□□□ 1.8
CLN3-240ENST00000631023 CCDC93Q567U6 631 aa26.3■■□□□ 1.8
CLN3-240ENST00000631023 CDHR2Q9BYE9 1310 aa26.3■■□□□ 1.8
CLN3-240ENST00000631023 PDE8AO60658 829 aa26.29■■□□□ 1.8
CLN3-240ENST00000631023 CC2D2BQ6DHV5 1058 aa26.29■■□□□ 1.8
CLN3-240ENST00000631023 TMX4Q9H1E5 349 aaPredicted RBP26.29■■□□□ 1.8
CLN3-240ENST00000631023 BEND3Q5T5X7 828 aa26.29■■□□□ 1.8
CLN3-240ENST00000631023 SLC4A10Q6U841 1118 aa26.29■■□□□ 1.8
CLN3-240ENST00000631023 JARID2Q92833 1246 aaPredicted RBP26.29■■□□□ 1.8
CLN3-240ENST00000631023 H7C1W4 665 aa26.28■■□□□ 1.8
CLN3-240ENST00000631023 BBOX1O75936 387 aa26.28■■□□□ 1.8
CLN3-240ENST00000631023 RTKN2Q8IZC4 609 aa26.28■■□□□ 1.8
CLN3-240ENST00000631023 ABCC4O15439 1325 aa26.27■■□□□ 1.8
CLN3-240ENST00000631023 DICER1Q9UPY3 1922 aaKnown RBP26.27■■□□□ 1.8
CLN3-240ENST00000631023 PPEF1O14829 653 aaPredicted RBP26.27■■□□□ 1.8
CLN3-240ENST00000631023 LMNB1P20700 586 aa26.27■■□□□ 1.8
CLN3-240ENST00000631023 BRPF1P55201 1214 aaPredicted RBP26.27■■□□□ 1.8
CLN3-240ENST00000631023 RASSF7Q02833 373 aa26.27■■□□□ 1.8
CLN3-240ENST00000631023 GRIPAP1Q4V328 841 aa26.27■■□□□ 1.8
CLN3-240ENST00000631023 C9orf131Q5VYM1 1079 aa26.27■■□□□ 1.8
CLN3-240ENST00000631023 UBE3BQ7Z3V4 1068 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms