RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	SLCO4C1	Q6ZQN7	724 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	ABTB2	Q8N961	1025 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	HELQ	Q8TDG4	1101 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	ACD	Q96AP0	544 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	SAP130	Q9H0E3	1048 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	KLK14	Q9P0G3	267 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	TNFRSF10B	O14763	440 aa		5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	OPLAH	O14841	1288 aa		5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	ADH6	P28332	368 aa		5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	IDH3A	P50213	366 aa		5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	SF3B2	Q13435	895 aa	Known RBP	5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	ZNF385C	Q66K41	422 aa	Predicted RBP	5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	STRN4	Q9NRL3	753 aa		5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	EGFL7	Q9UHF1	273 aa		5.85	□□□□□ -1.47
CNOT1-223	ENST00000628857	ADARB2-AS1	A8MUL3	147 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	BRD1	O95696	1058 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	CD33	P20138	364 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	MAP3K10	Q02779	954 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	LYPD4	Q6UWN0	246 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	CAPN12	Q6ZSI9	719 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	TREML1	Q86YW5	311 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	TNFRSF25	Q93038	417 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	PRR12	Q9ULL5	1215 aa		5.84	□□□□□ -1.47
CNOT1-223	ENST00000628857	MAP3K6	O95382	1288 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	RPLP1	P05386	114 aa	Known RBP	5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	SPEM2	Q0P670	501 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	CCIN	Q13939	588 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	NAA30	Q147X3	362 aa	Predicted RBP	5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	ALKBH2	Q6NS38	261 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	TXNDC2	Q86VQ3	553 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	ETFBKMT	Q8IXQ9	262 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	SVOP	Q8N4V2	548 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	MDFI	Q99750	246 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	MKNK1	Q9BUB5	465 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	TRAIP	Q9BWF2	469 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	GSX2	Q9BZM3	304 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	SEPT3	Q9UH03	358 aa		5.83	□□□□□ -1.48
CNOT1-223	ENST00000628857	FAM13A	O94988	1023 aa		5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	EPX	P11678	715 aa		5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	FKBP4	Q02790	459 aa	Known RBP eCLIP	5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	PCSK7	Q16549	785 aa		5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	GTF3C2	Q8WUA4	911 aa	Predicted RBP	5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	EDARADD	Q8WWZ3	215 aa		5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	PIK3R5	Q8WYR1	880 aa		5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	KLF15	Q9UIH9	416 aa		5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	GGA1	Q9UJY5	639 aa		5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	GNE	Q9Y223	722 aa	Known RBP	5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	FNDC3A	Q9Y2H6	1198 aa	Known RBP	5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	RTCB	Q9Y3I0	505 aa	Known RBP	5.82	□□□□□ -1.48
CNOT1-223	ENST00000628857	GRN	P28799	593 aa	Known RBP	5.81	□□□□□ -1.48
CNOT1-223	ENST00000628857	SYT9	Q86SS6	491 aa		5.81	□□□□□ -1.48
CNOT1-223	ENST00000628857	GALNT6	Q8NCL4	622 aa		5.81	□□□□□ -1.48
CNOT1-223	ENST00000628857	CCER1	Q8TC90	406 aa	Predicted RBP	5.81	□□□□□ -1.48
CNOT1-223	ENST00000628857	WHAMM	Q8TF30	809 aa		5.81	□□□□□ -1.48
CNOT1-223	ENST00000628857	SLC30A3	Q99726	388 aa		5.81	□□□□□ -1.48
CNOT1-223	ENST00000628857	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	5.81	□□□□□ -1.48
CNOT1-223	ENST00000628857	ELOA3C	A0A087WX78	387 aa	Predicted RBP	5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	CARNS1	A5YM72	827 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	ELOA3D	A6NLF2	546 aa	Predicted RBP	5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	PATL2	C9JE40	543 aa	Known RBP	5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	ALAS2	P22557	587 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	ELOA3B	Q3SY89	546 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	NOM1	Q5C9Z4	860 aa	Known RBP	5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	KANK3	Q6NY19	840 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	XKR5	Q6UX68	686 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	ELOA3	Q8NG57	546 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	ADAMTS8	Q9UP79	889 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	KCNMB2	Q9Y691	235 aa		5.8	□□□□□ -1.48
CNOT1-223	ENST00000628857	NEURL1B	A8MQ27	555 aa		5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	ICMT	O60725	284 aa		5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	HOXD8	P13378	290 aa	Predicted RBP	5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	ZAP70	P43403	619 aa		5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	C1orf229	Q6ZS94	237 aa	Predicted RBP	5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	FCHSD1	Q86WN1	690 aa		5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	SCARF2	Q96GP6	870 aa	Predicted RBP	5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	BTBD6	Q96KE9	485 aa		5.79	□□□□□ -1.48
CNOT1-223	ENST00000628857	PIK3R2	O00459	728 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	ZBTB39	O15060	712 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	PCSK2	P16519	638 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	MZF1	P28698	734 aa	Predicted RBP	5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	SOX18	P35713	384 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	USP5	P45974	858 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	PCBP4	P57723	403 aa	Known RBP	5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	FAM26D	Q5JW98	314 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	PDE12	Q6L8Q7	609 aa	Known RBP	5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	BEND7	Q8N7W2	519 aa	Predicted RBP	5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	PNMA5	Q96PV4	448 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	PRDM6	Q9NQX0	595 aa		5.78	□□□□□ -1.48
CNOT1-223	ENST00000628857	XYLB	O75191	536 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	EIF1AX	P47813	144 aa	Known RBP	5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	EHHADH	Q08426	723 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	KCNA1	Q09470	495 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	GRIN2C	Q14957	1233 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	NLRP13	Q86W25	1043 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	RGL4	Q8IZJ4	473 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	CMTR1	Q8N1G2	835 aa	Known RBP	5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	NEDD1	Q8NHV4	660 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	TRPM4	Q8TD43	1214 aa		5.77	□□□□□ -1.49
CNOT1-223	ENST00000628857	BHMT	Q93088	406 aa		5.77	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms