RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 CRY2Q49AN0 593 aa19.21■□□□□ 0.67
LINC00643-205ENST00000623219 ERFEQ4G0M1 354 aa19.21■□□□□ 0.67
LINC00643-205ENST00000623219 SCN4AP35499 1836 aa19.21■□□□□ 0.67
LINC00643-205ENST00000623219 HYPKQ9NX55 129 aa19.2■□□□□ 0.66
LINC00643-205ENST00000623219 ZNF219Q9P2Y4 722 aaPredicted RBP19.2■□□□□ 0.66
LINC00643-205ENST00000623219 KDM2BQ8NHM5 1336 aa19.2■□□□□ 0.66
LINC00643-205ENST00000623219 KIF3CO14782 793 aa19.19■□□□□ 0.66
LINC00643-205ENST00000623219 PRELPP51888 382 aa19.19■□□□□ 0.66
LINC00643-205ENST00000623219 WWC1Q8IX03 1113 aa19.19■□□□□ 0.66
LINC00643-205ENST00000623219 TAOK3Q9H2K8 898 aa19.19■□□□□ 0.66
LINC00643-205ENST00000623219 CEP350Q5VT06 3117 aa19.18■□□□□ 0.66
LINC00643-205ENST00000623219 ALDH1B1P30837 517 aa19.18■□□□□ 0.66
LINC00643-205ENST00000623219 CCDC93Q567U6 631 aa19.18■□□□□ 0.66
LINC00643-205ENST00000623219 PLBD2Q8NHP8 589 aa19.18■□□□□ 0.66
LINC00643-205ENST00000623219 IL16Q14005 1332 aa19.18■□□□□ 0.66
LINC00643-205ENST00000623219 SNED1Q8TER0 1413 aa19.17■□□□□ 0.66
LINC00643-205ENST00000623219 SPEF2Q9C093 1822 aa19.17■□□□□ 0.66
LINC00643-205ENST00000623219 TCIRG1Q13488 830 aa19.17■□□□□ 0.66
LINC00643-205ENST00000623219 C7orf43Q8WVR3 580 aa19.17■□□□□ 0.66
LINC00643-205ENST00000623219 UTP14AQ9BVJ6 771 aaKnown RBP19.17■□□□□ 0.66
LINC00643-205ENST00000623219 CHMP4AQ9BY43 222 aa19.17■□□□□ 0.66
LINC00643-205ENST00000623219 NLRP10Q86W26 655 aa19.16■□□□□ 0.66
LINC00643-205ENST00000623219 RPGRQ92834 1020 aaKnown RBP19.16■□□□□ 0.66
LINC00643-205ENST00000623219 NMRK2Q9NPI5 230 aa19.16■□□□□ 0.66
LINC00643-205ENST00000623219 ANKRD13DQ6ZTN6 518 aa19.15■□□□□ 0.66
LINC00643-205ENST00000623219 C8orf58Q8NAV2 365 aa19.15■□□□□ 0.66
LINC00643-205ENST00000623219 TSR2Q969E8 191 aaKnown RBP19.15■□□□□ 0.66
LINC00643-205ENST00000623219 ELL2O00472 640 aaPredicted RBP19.14■□□□□ 0.65
LINC00643-205ENST00000623219 HOXA10P31260 410 aaPredicted RBP19.14■□□□□ 0.65
LINC00643-205ENST00000623219 SENP3-EIF4A1A0A087X0R7 540 aa19.13■□□□□ 0.65
LINC00643-205ENST00000623219 GOLGA2Q08379 1002 aa19.13■□□□□ 0.65
LINC00643-205ENST00000623219 SLC10A5Q5PT55 438 aa19.13■□□□□ 0.65
LINC00643-205ENST00000623219 CCDC30Q5VVM6 783 aa19.13■□□□□ 0.65
LINC00643-205ENST00000623219 NLRP3Q96P20 1036 aa19.13■□□□□ 0.65
LINC00643-205ENST00000623219 SH3TC1Q8TE82 1336 aa19.13■□□□□ 0.65
LINC00643-205ENST00000623219 LTBP1Q14766 1721 aa19.12■□□□□ 0.65
LINC00643-205ENST00000623219 GLTPD2A6NH11 291 aa19.12■□□□□ 0.65
LINC00643-205ENST00000623219 FKBP4Q02790 459 aaKnown RBP eCLIP19.12■□□□□ 0.65
LINC00643-205ENST00000623219 RTKN2Q8IZC4 609 aa19.12■□□□□ 0.65
LINC00643-205ENST00000623219 RBM17Q96I25 401 aaKnown RBP19.12■□□□□ 0.65
LINC00643-205ENST00000623219 CRAMP1Q96RY5 1269 aa19.12■□□□□ 0.65
LINC00643-205ENST00000623219 ISCA1Q9BUE6 129 aa19.12■□□□□ 0.65
LINC00643-205ENST00000623219 C3orf67Q6ZVT6 689 aa19.11■□□□□ 0.65
LINC00643-205ENST00000623219 TSPYL6Q8N831 410 aa19.11■□□□□ 0.65
LINC00643-205ENST00000623219 PHAXQ9H814 394 aaKnown RBP19.11■□□□□ 0.65
LINC00643-205ENST00000623219 TRMT112Q9UI30 125 aaKnown RBP19.11■□□□□ 0.65
LINC00643-205ENST00000623219 FANCIQ9NVI1 1328 aa19.1■□□□□ 0.65
LINC00643-205ENST00000623219 TOMM70O94826 608 aa19.1■□□□□ 0.65
LINC00643-205ENST00000623219 CC2D2BQ6DHV5 1058 aa19.1■□□□□ 0.65
LINC00643-205ENST00000623219 WDR63Q8IWG1 891 aa19.1■□□□□ 0.65
LINC00643-205ENST00000623219 FAM9BQ8IZU0 186 aa19.1■□□□□ 0.65
LINC00643-205ENST00000623219 PPEF1O14829 653 aaPredicted RBP19.09■□□□□ 0.65
LINC00643-205ENST00000623219 TWISTNBQ3B726 338 aaPredicted RBP19.09■□□□□ 0.65
LINC00643-205ENST00000623219 GRIPAP1Q4V328 841 aa19.09■□□□□ 0.65
LINC00643-205ENST00000623219 OLFM4Q6UX06 510 aa19.09■□□□□ 0.65
LINC00643-205ENST00000623219 RIC3Q7Z5B4 369 aa19.09■□□□□ 0.65
LINC00643-205ENST00000623219 C16orf71Q8IYS4 520 aaPredicted RBP19.09■□□□□ 0.65
LINC00643-205ENST00000623219 ABCC4O15439 1325 aa19.08■□□□□ 0.65
LINC00643-205ENST00000623219 DDX58O95786 925 aaKnown RBP19.08■□□□□ 0.64
LINC00643-205ENST00000623219 TRIM28Q13263 835 aaKnown RBP19.08■□□□□ 0.64
LINC00643-205ENST00000623219 DPY19L2Q6NUT2 758 aa19.08■□□□□ 0.64
LINC00643-205ENST00000623219 PSMD1Q99460 953 aa19.08■□□□□ 0.64
LINC00643-205ENST00000623219 STK31Q9BXU1 1019 aa19.08■□□□□ 0.64
LINC00643-205ENST00000623219 RRAGCQ9HB90 399 aa19.08■□□□□ 0.64
LINC00643-205ENST00000623219 COL4A1P02462 1669 aa19.08■□□□□ 0.64
LINC00643-205ENST00000623219 COL4A5P29400 1685 aa19.08■□□□□ 0.64
LINC00643-205ENST00000623219 DUOX1Q9NRD9 1551 aa19.07■□□□□ 0.64
LINC00643-205ENST00000623219 ATP5J2-PTCD1G3V325 749 aa19.07■□□□□ 0.64
LINC00643-205ENST00000623219 HCLS1P14317 486 aaPredicted RBP19.07■□□□□ 0.64
LINC00643-205ENST00000623219 RBM46Q8TBY0 533 aaKnown RBP19.07■□□□□ 0.64
LINC00643-205ENST00000623219 SYNE4Q8N205 404 aa19.06■□□□□ 0.64
LINC00643-205ENST00000623219 ZNF277Q9NRM2 450 aaPredicted RBP19.06■□□□□ 0.64
LINC00643-205ENST00000623219 SALL2Q9Y467 1007 aaPredicted RBP19.06■□□□□ 0.64
LINC00643-205ENST00000623219 PSME4Q14997 1843 aa19.06■□□□□ 0.64
LINC00643-205ENST00000623219 ADAMTSL1Q8N6G6 1762 aa19.06■□□□□ 0.64
LINC00643-205ENST00000623219 HSPA6P17066 643 aa19.05■□□□□ 0.64
LINC00643-205ENST00000623219 IARSP41252 1262 aaKnown RBP19.05■□□□□ 0.64
LINC00643-205ENST00000623219 A0A1B0GUL6 1792 aa19.05■□□□□ 0.64
LINC00643-205ENST00000623219 VEGFAP15692 232 aaPredicted RBP19.04■□□□□ 0.64
LINC00643-205ENST00000623219 FAM89AQ96GI7 184 aa19.04■□□□□ 0.64
LINC00643-205ENST00000623219 MYD88Q99836 296 aa19.04■□□□□ 0.64
LINC00643-205ENST00000623219 GRAPQ13588 217 aa19.03■□□□□ 0.64
LINC00643-205ENST00000623219 DDX46Q7L014 1031 aaKnown RBP19.03■□□□□ 0.64
LINC00643-205ENST00000623219 CCDC191Q8NCU4 936 aa19.03■□□□□ 0.64
LINC00643-205ENST00000623219 GRAPLQ8TC17 118 aaPredicted RBP19.03■□□□□ 0.64
LINC00643-205ENST00000623219 ZNF428Q96B54 188 aa19.03■□□□□ 0.64
LINC00643-205ENST00000623219 METTL22Q9BUU2 404 aaPredicted RBP19.03■□□□□ 0.64
LINC00643-205ENST00000623219 TMX4Q9H1E5 349 aaPredicted RBP19.03■□□□□ 0.64
LINC00643-205ENST00000623219 ATP6V0A2Q9Y487 856 aa19.03■□□□□ 0.64
LINC00643-205ENST00000623219 FSTL1Q12841 308 aa19.02■□□□□ 0.64
LINC00643-205ENST00000623219 ZBTB38Q8NAP3 1195 aaPredicted RBP19.02■□□□□ 0.64
LINC00643-205ENST00000623219 BBOX1O75936 387 aa19.01■□□□□ 0.63
LINC00643-205ENST00000623219 HSP90B1P14625 803 aaKnown RBP19.01■□□□□ 0.63
LINC00643-205ENST00000623219 SF3B3Q15393 1217 aaKnown RBP19.01■□□□□ 0.63
LINC00643-205ENST00000623219 KSR2Q6VAB6 950 aa19.01■□□□□ 0.63
LINC00643-205ENST00000623219 TMC4Q7Z404 712 aa19.01■□□□□ 0.63
LINC00643-205ENST00000623219 SLC51AQ86UW1 340 aa19.01■□□□□ 0.63
LINC00643-205ENST00000623219 MYH16Q9H6N6 1097 aa19.01■□□□□ 0.63
LINC00643-205ENST00000623219 CWC25Q9NXE8 425 aaPredicted RBP19.01■□□□□ 0.63
LINC00643-205ENST00000623219 MAP3K2Q9Y2U5 619 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms