RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 GORABQ5T7V8 394 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 TNRQ92752 1358 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 CAPN15O75808 1086 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 TPM1P09493 284 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 USP8P40818 1118 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 THEMISQ8N1K5 641 aaPredicted RBP9.26□□□□□ -0.93
VPS11-209ENST00000622309 PDRG1Q9NUG6 133 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 ATP6V1DQ9Y5K8 247 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 NEURL4Q96JN8 1562 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 SEC31AO94979 1220 aaKnown RBP9.26□□□□□ -0.93
VPS11-209ENST00000622309 CUL4AQ13619 759 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 LRRC8AQ8IWT6 810 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 TSR2Q969E8 191 aaKnown RBP9.26□□□□□ -0.93
VPS11-209ENST00000622309 SRCIN1Q9C0H9 1055 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 ERBB3P21860 1342 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 MROH1Q8NDA8 1641 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 CORO7P57737 925 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 SNW1Q13573 536 aaKnown RBP9.26□□□□□ -0.93
VPS11-209ENST00000622309 REXO1L1PQ8IX06 675 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 MICALL1Q8N3F8 863 aa9.26□□□□□ -0.93
VPS11-209ENST00000622309 H0YHG0 523 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 SARNPP82979 210 aaKnown RBP9.25□□□□□ -0.93
VPS11-209ENST00000622309 MAP3K11Q16584 847 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 CCDC96Q2M329 555 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 GIMAP7Q8NHV1 300 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 SLC12A5Q9H2X9 1139 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS11-209ENST00000622309 VWDEQ8N2E2 1590 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 MED14O60244 1454 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 DEPDC5O75140 1603 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 FOSBP53539 338 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 TYRO3Q06418 890 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 TTC22Q5TAA0 569 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 FBXO31Q5XUX0 539 aaPredicted RBP9.25□□□□□ -0.93
VPS11-209ENST00000622309 NBPF11Q86T75 865 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 EFCAB13Q8IY85 973 aa9.25□□□□□ -0.93
VPS11-209ENST00000622309 TTC36A6NLP5 189 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 ERC2O15083 957 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 SMC2O95347 1197 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 PLA2G4DQ86XP0 818 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 CCAR2Q8N163 923 aaKnown RBP9.24□□□□□ -0.93
VPS11-209ENST00000622309 ORC3Q9UBD5 711 aaPredicted RBP9.24□□□□□ -0.93
VPS11-209ENST00000622309 MKRN1Q9UHC7 482 aaKnown RBP9.24□□□□□ -0.93
VPS11-209ENST00000622309 NPHP4O75161 1426 aaPredicted RBP9.24□□□□□ -0.93
VPS11-209ENST00000622309 ANKRD65E5RJM6 399 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 PEX14O75381 377 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 IDI1Q13907 227 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 PLEKHM2Q8IWE5 1019 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 CCDC82Q8N4S0 544 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 CBX8Q9HC52 389 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 KIF3CO14782 793 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 CCDC144BQ3MJ40 725 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 CCDC144CPQ8IYA2 1237 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 NUP62CLQ9H1M0 184 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 L2HGDHQ9H9P8 463 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 STAG3Q9UJ98 1225 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 SYNMO15061 1565 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 EFCAB6Q5THR3 1501 aa9.24□□□□□ -0.93
VPS11-209ENST00000622309 RNF17Q9BXT8 1623 aaKnown RBP9.23□□□□□ -0.93
VPS11-209ENST00000622309 ANO6Q4KMQ2 910 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 MORC1Q86VD1 984 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 CARD14Q9BXL6 1004 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 UBXN6Q9BZV1 441 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 ZSCAN16Q9H4T2 348 aaPredicted RBP9.23□□□□□ -0.93
VPS11-209ENST00000622309 ARFGAP3Q9NP61 516 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 CSB-PGBD3P0DP91 1061 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 GET4Q7L5D6 327 aaPredicted RBP9.23□□□□□ -0.93
VPS11-209ENST00000622309 TADA2BQ86TJ2 420 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 CHMP3Q9Y3E7 222 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 MRVI1Q9Y6F6 885 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 A0A087WUV0 522 aaPredicted RBP9.23□□□□□ -0.93
VPS11-209ENST00000622309 CCDC69A6NI79 296 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 GOLGA6L19H0YKK7 550 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 CPP00450 1065 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 ZSCAN22P10073 491 aaPredicted RBP9.23□□□□□ -0.93
VPS11-209ENST00000622309 CAMK4Q16566 473 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 HOMER1Q86YM7 354 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 VPS18Q9P253 973 aa9.23□□□□□ -0.93
VPS11-209ENST00000622309 ATAD2Q6PL18 1390 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 TBC1D8O95759 1140 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 LIG1P18858 919 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 GNL2Q13823 731 aaKnown RBP9.22□□□□□ -0.93
VPS11-209ENST00000622309 LRRN4CLQ8ND94 238 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 PPIP5K1Q6PFW1 1433 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 MARCH6O60337 910 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 SDSP20132 328 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 CCDC125Q86Z20 511 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 FAM107BQ9H098 131 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 POLR3AO14802 1390 aaPredicted RBP9.22□□□□□ -0.93
VPS11-209ENST00000622309 ALKQ9UM73 1620 aa9.22□□□□□ -0.93
VPS11-209ENST00000622309 MPHOSPH10O00566 681 aaKnown RBP9.21□□□□□ -0.93
VPS11-209ENST00000622309 SASH3O75995 380 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 CDC25BP30305 580 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 ARID5BQ14865 1188 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 CCDC158Q5M9N0 1113 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 RBM26Q5T8P6 1007 aaKnown RBP9.21□□□□□ -0.93
VPS11-209ENST00000622309 FOXR1Q6PIV2 292 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 GBP6Q6ZN66 633 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 JMYQ8N9B5 988 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 CCDC97Q96F63 343 aaPredicted RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms