RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 KRT24Q2M2I5 525 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 ERFEQ4G0M1 354 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 C3orf67Q6ZVT6 689 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 PNISRQ8TF01 805 aaKnown RBP15.1■□□□□ 0.01
CPNE3-210ENST00000621245 TSPYL4Q9UJ04 414 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 SCN4AP35499 1836 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 DDX60Q8IY21 1712 aaKnown RBP15.09■□□□□ 0.01
CPNE3-210ENST00000621245 POTEIP0CG38 1075 aa15.09■□□□□ 0.01
CPNE3-210ENST00000621245 POTEJP0CG39 1038 aa15.09■□□□□ 0.01
CPNE3-210ENST00000621245 NPR1P16066 1061 aa15.09■□□□□ 0.01
CPNE3-210ENST00000621245 FSTL1Q12841 308 aa15.09■□□□□ 0.01
CPNE3-210ENST00000621245 PLCD3Q8N3E9 789 aa15.09■□□□□ 0.01
CPNE3-210ENST00000621245 MYBBP1AQ9BQG0 1328 aaKnown RBP15.09■□□□□ 0.01
CPNE3-210ENST00000621245 LTBP1Q14766 1721 aa15.09■□□□□ 0.01
CPNE3-210ENST00000621245 ADAMTSL1Q8N6G6 1762 aa15.08■□□□□ 0.01
CPNE3-210ENST00000621245 RGL2O15211 777 aa15.08■□□□□ 0
CPNE3-210ENST00000621245 DDNO94850 711 aaPredicted RBP15.08■□□□□ 0
CPNE3-210ENST00000621245 SUSD4Q5VX71 490 aa15.08■□□□□ 0
CPNE3-210ENST00000621245 TPTE2Q6XPS3 522 aa15.08■□□□□ 0
CPNE3-210ENST00000621245 NECTIN2Q92692 538 aa15.08■□□□□ 0
CPNE3-210ENST00000621245 ZNF277Q9NRM2 450 aaPredicted RBP15.08■□□□□ 0
CPNE3-210ENST00000621245 COL4A1P02462 1669 aa15.08■□□□□ 0
CPNE3-210ENST00000621245 ZNF541Q9H0D2 1346 aa15.08■□□□□ 0
CPNE3-210ENST00000621245 ERVV-1B6SEH8 477 aa15.07■□□□□ 0
CPNE3-210ENST00000621245 VEGFAP15692 232 aaPredicted RBP15.07■□□□□ 0
CPNE3-210ENST00000621245 EIF2S2P20042 333 aaKnown RBP15.07■□□□□ 0
CPNE3-210ENST00000621245 CCDC93Q567U6 631 aa15.07■□□□□ 0
CPNE3-210ENST00000621245 KIF6Q6ZMV9 814 aa15.07■□□□□ 0
CPNE3-210ENST00000621245 SMC1BQ8NDV3 1235 aa15.07■□□□□ 0
CPNE3-210ENST00000621245 TRIM35Q9UPQ4 493 aa15.07■□□□□ 0
CPNE3-210ENST00000621245 RIC1Q4ADV7 1423 aa15.07■□□□□ 0
CPNE3-210ENST00000621245 NTSR2O95665 410 aa15.06■□□□□ 0
CPNE3-210ENST00000621245 NEUROD2Q15784 382 aa15.06■□□□□ 0
CPNE3-210ENST00000621245 CRY2Q49AN0 593 aa15.06■□□□□ 0
CPNE3-210ENST00000621245 ZNF428Q96B54 188 aa15.06■□□□□ 0
CPNE3-210ENST00000621245 IBTKQ9P2D0 1353 aaPredicted RBP15.06■□□□□ 0
CPNE3-210ENST00000621245 FKBP4Q02790 459 aaKnown RBP eCLIP15.05■□□□□ -0
CPNE3-210ENST00000621245 ZNF34Q8IZ26 560 aa15.05■□□□□ -0
CPNE3-210ENST00000621245 KLRG1Q96E93 195 aa15.05■□□□□ -0
CPNE3-210ENST00000621245 PNNQ9H307 717 aaKnown RBP15.04■□□□□ -0
CPNE3-210ENST00000621245 ERBB4Q15303 1308 aa15.03■□□□□ -0
CPNE3-210ENST00000621245 GTF2E1P29083 439 aaPredicted RBP15.03■□□□□ -0
CPNE3-210ENST00000621245 SOGA3Q5TF21 947 aa15.03■□□□□ -0
CPNE3-210ENST00000621245 GIGYF2Q6Y7W6 1299 aaKnown RBP15.03■□□□□ -0
CPNE3-210ENST00000621245 SYNE4Q8N205 404 aa15.03■□□□□ -0
CPNE3-210ENST00000621245 NYXQ9GZU5 481 aa15.03■□□□□ -0
CPNE3-210ENST00000621245 ADAMTS8Q9UP79 889 aa15.03■□□□□ -0
CPNE3-210ENST00000621245 MIER1Q8N108 512 aa15.02■□□□□ -0
CPNE3-210ENST00000621245 LRRC37AA6NMS7 1700 aa15.02□□□□□ -0.01
CPNE3-210ENST00000621245 CHL1O00533 1208 aa15.01□□□□□ -0.01
CPNE3-210ENST00000621245 TCERG1O14776 1098 aaKnown RBP15.01□□□□□ -0.01
CPNE3-210ENST00000621245 DPY19L2Q6NUT2 758 aa15.01□□□□□ -0.01
CPNE3-210ENST00000621245 XAGE3Q8WTP9 111 aa15.01□□□□□ -0.01
CPNE3-210ENST00000621245 BBXQ8WY36 941 aaPredicted RBP15.01□□□□□ -0.01
CPNE3-210ENST00000621245 RUNDC1Q96C34 613 aa15.01□□□□□ -0.01
CPNE3-210ENST00000621245 LAS1LQ9Y4W2 734 aaKnown RBP15.01□□□□□ -0.01
CPNE3-210ENST00000621245 DUOX1Q9NRD9 1551 aa15□□□□□ -0.01
CPNE3-210ENST00000621245 HOXA10P31260 410 aaPredicted RBP15□□□□□ -0.01
CPNE3-210ENST00000621245 IARSP41252 1262 aaKnown RBP15□□□□□ -0.01
CPNE3-210ENST00000621245 AIMP1Q12904 312 aaKnown RBP15□□□□□ -0.01
CPNE3-210ENST00000621245 COPS6Q7L5N1 327 aa15□□□□□ -0.01
CPNE3-210ENST00000621245 JMYQ8N9B5 988 aa15□□□□□ -0.01
CPNE3-210ENST00000621245 PRKRIP1Q9H875 184 aaPredicted RBP15□□□□□ -0.01
CPNE3-210ENST00000621245 CHPF2Q9P2E5 772 aa15□□□□□ -0.01
CPNE3-210ENST00000621245 ALDH1B1P30837 517 aa14.99□□□□□ -0.01
CPNE3-210ENST00000621245 LMOD3Q0VAK6 560 aa14.99□□□□□ -0.01
CPNE3-210ENST00000621245 WDR43Q15061 677 aaKnown RBP eCLIP14.99□□□□□ -0.01
CPNE3-210ENST00000621245 RPGRQ92834 1020 aaKnown RBP14.99□□□□□ -0.01
CPNE3-210ENST00000621245 L3MBTL3Q96JM7 780 aaPredicted RBP14.99□□□□□ -0.01
CPNE3-210ENST00000621245 TAF1DQ9H5J8 278 aaPredicted RBP14.99□□□□□ -0.01
CPNE3-210ENST00000621245 BABAM1Q9NWV8 329 aa14.99□□□□□ -0.01
CPNE3-210ENST00000621245 ABCC4O15439 1325 aa14.98□□□□□ -0.01
CPNE3-210ENST00000621245 RNF123Q5XPI4 1314 aa14.98□□□□□ -0.01
CPNE3-210ENST00000621245 PPEF1O14829 653 aaPredicted RBP14.98□□□□□ -0.01
CPNE3-210ENST00000621245 CHADLQ6NUI6 762 aa14.98□□□□□ -0.01
CPNE3-210ENST00000621245 NLRP10Q86W26 655 aa14.98□□□□□ -0.01
CPNE3-210ENST00000621245 RTKN2Q8IZC4 609 aa14.98□□□□□ -0.01
CPNE3-210ENST00000621245 FZD9O00144 591 aa14.97□□□□□ -0.01
CPNE3-210ENST00000621245 HCLS1P14317 486 aaPredicted RBP14.97□□□□□ -0.01
CPNE3-210ENST00000621245 PSMD1Q99460 953 aa14.97□□□□□ -0.01
CPNE3-210ENST00000621245 UTP14AQ9BVJ6 771 aaKnown RBP14.97□□□□□ -0.01
CPNE3-210ENST00000621245 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.97□□□□□ -0.01
CPNE3-210ENST00000621245 CCDC184Q52MB2 194 aa14.96□□□□□ -0.01
CPNE3-210ENST00000621245 PARP10Q53GL7 1025 aa14.96□□□□□ -0.01
CPNE3-210ENST00000621245 CRAMP1Q96RY5 1269 aa14.96□□□□□ -0.01
CPNE3-210ENST00000621245 DDX21Q9NR30 783 aaKnown RBP eCLIP14.96□□□□□ -0.01
CPNE3-210ENST00000621245 PASKQ96RG2 1323 aa14.95□□□□□ -0.02
CPNE3-210ENST00000621245 SPEF2Q9C093 1822 aa14.95□□□□□ -0.02
CPNE3-210ENST00000621245 EAPPQ56P03 285 aaPredicted RBP14.95□□□□□ -0.02
CPNE3-210ENST00000621245 SLC10A5Q5PT55 438 aa14.95□□□□□ -0.02
CPNE3-210ENST00000621245 HDGFL1Q5TGJ6 251 aa14.95□□□□□ -0.02
CPNE3-210ENST00000621245 PPP1R42Q7Z4L9 355 aa14.95□□□□□ -0.02
CPNE3-210ENST00000621245 RBM17Q96I25 401 aaKnown RBP14.95□□□□□ -0.02
CPNE3-210ENST00000621245 MBIPQ9NS73 344 aa14.95□□□□□ -0.02
CPNE3-210ENST00000621245 TRPM7Q96QT4 1865 aa14.95□□□□□ -0.02
CPNE3-210ENST00000621245 TCIRG1Q13488 830 aa14.94□□□□□ -0.02
CPNE3-210ENST00000621245 APAF1O14727 1248 aa14.93□□□□□ -0.02
CPNE3-210ENST00000621245 ZNF853P0CG23 659 aa14.93□□□□□ -0.02
CPNE3-210ENST00000621245 EPHX2P34913 555 aa14.93□□□□□ -0.02
CPNE3-210ENST00000621245 AOC3Q16853 763 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms