RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 NUP62CLQ9H1M0 184 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 POLKQ9UBT6 870 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 AFF2P51816 1311 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 TUBGCP6Q96RT7 1819 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 VGLL3A8MV65 326 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 CAVIN2O95810 425 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 LRRCC1Q9C099 1032 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 USP21Q9UK80 565 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 CCDC9Q9Y3X0 531 aaKnown RBP12.82□□□□□ -0.36
UPF3A-212ENST00000619079 AATKQ6ZMQ8 1374 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 CRYBG1Q9Y4K1 1723 aa12.82□□□□□ -0.36
UPF3A-212ENST00000619079 USP54Q70EL1 1684 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 TRIM6-TRIM34B2RNG4 842 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 ZBTB22O15209 634 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 CDC25BP30305 580 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 TYRO3Q06418 890 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 KMT5BQ4FZB7 885 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 PLA2G4DQ86XP0 818 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 RTF1Q92541 710 aaKnown RBP12.81□□□□□ -0.36
UPF3A-212ENST00000619079 KIF2AO00139 706 aaPredicted RBP12.81□□□□□ -0.36
UPF3A-212ENST00000619079 HMOX1P09601 288 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 HOXC9P31274 260 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 ZNF75DP51815 510 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 RILPL2Q969X0 211 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 TRIM5Q9C035 493 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 STAP2Q9UGK3 403 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 AXIN2Q9Y2T1 843 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 ELP1O95163 1332 aa12.81□□□□□ -0.36
UPF3A-212ENST00000619079 HTATSF1O43719 755 aaKnown RBP12.8□□□□□ -0.36
UPF3A-212ENST00000619079 CCT4P50991 539 aaKnown RBP12.8□□□□□ -0.36
UPF3A-212ENST00000619079 LRMPQ12912 555 aa12.8□□□□□ -0.36
UPF3A-212ENST00000619079 IP6K1Q92551 441 aa12.8□□□□□ -0.36
UPF3A-212ENST00000619079 MRVI1Q9Y6F6 885 aa12.8□□□□□ -0.36
UPF3A-212ENST00000619079 FLT4P35916 1363 aa12.8□□□□□ -0.36
UPF3A-212ENST00000619079 HSP90AB2PQ58FF8 381 aa12.8□□□□□ -0.36
UPF3A-212ENST00000619079 TDRD7Q8NHU6 1098 aaKnown RBP12.8□□□□□ -0.36
UPF3A-212ENST00000619079 TTC14Q96N46 770 aa12.8□□□□□ -0.36
UPF3A-212ENST00000619079 CDK12Q9NYV4 1490 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-212ENST00000619079 DNM1Q05193 864 aaKnown RBP12.79□□□□□ -0.36
UPF3A-212ENST00000619079 BMS1Q14692 1282 aaKnown RBP12.79□□□□□ -0.36
UPF3A-212ENST00000619079 TAF7LQ5H9L4 462 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 FNBP4Q8N3X1 1017 aaPredicted RBP12.79□□□□□ -0.36
UPF3A-212ENST00000619079 KIF1BPQ96EK5 621 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 RAD50Q92878 1312 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 KRT85P78386 507 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 PTPN14Q15678 1187 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 LUZP1Q86V48 1076 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 UNC5CLQ8IV45 518 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 NOL10Q9BSC4 688 aaKnown RBP12.79□□□□□ -0.36
UPF3A-212ENST00000619079 DDX19AQ9NUU7 478 aaKnown RBP12.79□□□□□ -0.36
UPF3A-212ENST00000619079 CLIP2Q9UDT6 1046 aa12.79□□□□□ -0.36
UPF3A-212ENST00000619079 GNAI2P04899 355 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 CYP2C19P33261 490 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 IL13P35225 146 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 RBM6P78332 1123 aaKnown RBP12.78□□□□□ -0.36
UPF3A-212ENST00000619079 TPRNQ4KMQ1 711 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 TOM1L2Q6ZVM7 507 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 ANKRD24Q8TF21 1146 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 ZSCAN31Q96LW9 406 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-212ENST00000619079 TNMDQ9H2S6 317 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 CBX8Q9HC52 389 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 SH2B1Q9NRF2 756 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-212ENST00000619079 ZNF215Q9UL58 517 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-212ENST00000619079 MTMR6Q9Y217 621 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 AK2P54819 239 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 NAA30Q147X3 362 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-212ENST00000619079 ZNF772Q68DY9 489 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-212ENST00000619079 ZNF592Q92610 1267 aa12.78□□□□□ -0.36
UPF3A-212ENST00000619079 LTN1O94822 1766 aa12.77□□□□□ -0.36
UPF3A-212ENST00000619079 COL14A1Q05707 1796 aaKnown RBP12.77□□□□□ -0.36
UPF3A-212ENST00000619079 ERICH4A6NGS2 130 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 SLU7O95391 586 aaKnown RBP12.77□□□□□ -0.37
UPF3A-212ENST00000619079 ANO6Q4KMQ2 910 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 FBXO38Q6PIJ6 1188 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 NYAP1Q6ZVC0 841 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 CAMTA1Q9Y6Y1 1673 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 KRT24Q2M2I5 525 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 LARP1Q6PKG0 1096 aaKnown RBP12.77□□□□□ -0.37
UPF3A-212ENST00000619079 CACTINQ8WUQ7 758 aaKnown RBP12.77□□□□□ -0.37
UPF3A-212ENST00000619079 NLRP2Q9NX02 1062 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 SLIT2O94813 1529 aa12.77□□□□□ -0.37
UPF3A-212ENST00000619079 ERBB3P21860 1342 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 DLG5Q8TDM6 1919 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 GJB2P29033 226 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 RBM43Q6ZSC3 357 aaKnown RBP12.76□□□□□ -0.37
UPF3A-212ENST00000619079 RUFY3Q7L099 469 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 KCND1Q9NSA2 647 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 EXOC6BQ9Y2D4 811 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 SNX14Q9Y5W7 946 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 GOLGA6L4A6NEF3 574 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 TEX35Q5T0J7 233 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 TSHZ3Q63HK5 1081 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 SARM1Q6SZW1 724 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 SCAND2PQ9GZW5 306 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-212ENST00000619079 QTRT2Q9H974 415 aaKnown RBP12.76□□□□□ -0.37
UPF3A-212ENST00000619079 NRBP1Q9UHY1 535 aa12.76□□□□□ -0.37
UPF3A-212ENST00000619079 TRPC5Q9UL62 973 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-212ENST00000619079 COL5A2P05997 1499 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-212ENST00000619079 GNAI3P08754 354 aa12.75□□□□□ -0.37
UPF3A-212ENST00000619079 PDCP20941 246 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms