RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 TTC41PQ6P2S7 1318 aa16.41■□□□□ 0.22
CIITA-213ENST00000618327 NLRP3Q96P20 1036 aa16.41■□□□□ 0.22
CIITA-213ENST00000618327 SAMD1Q6SPF0 538 aaPredicted RBP16.41■□□□□ 0.22
CIITA-213ENST00000618327 ANKRD18AQ8IVF6 992 aa16.41■□□□□ 0.22
CIITA-213ENST00000618327 CARD10Q9BWT7 1032 aa16.41■□□□□ 0.22
CIITA-213ENST00000618327 NBPF7P0C2Y1 421 aaPredicted RBP16.41■□□□□ 0.22
CIITA-213ENST00000618327 UQCRFS1P1P0C7P4 283 aa16.41■□□□□ 0.22
CIITA-213ENST00000618327 TPD52L1Q16890 204 aaPredicted RBP16.41■□□□□ 0.22
CIITA-213ENST00000618327 CAVIN1Q6NZI2 390 aaKnown RBP16.41■□□□□ 0.22
CIITA-213ENST00000618327 SASS6Q6UVJ0 657 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 ZNF396Q96N95 335 aaPredicted RBP16.4■□□□□ 0.22
CIITA-213ENST00000618327 DZIP1Q86YF9 867 aaKnown RBP16.4■□□□□ 0.22
CIITA-213ENST00000618327 DLC1Q96QB1 1528 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 ATP2B1P20020 1258 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 CCDC191Q8NCU4 936 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 ESYT1Q9BSJ8 1104 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 FRMPD1Q5SYB0 1578 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 VWDEQ8N2E2 1590 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 HMGB1P09429 215 aaKnown RBP16.4■□□□□ 0.22
CIITA-213ENST00000618327 ZNF853P0CG23 659 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 CCDC83Q8IWF9 413 aa16.4■□□□□ 0.22
CIITA-213ENST00000618327 PREX1Q8TCU6 1659 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 CDKL5O76039 1030 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 IKQ13123 557 aaPredicted RBP16.39■□□□□ 0.21
CIITA-213ENST00000618327 CDC42BPGQ6DT37 1551 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 WDR17Q8IZU2 1322 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 NRXN1Q9ULB1 1477 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 MINDY4BA8MYZ0 360 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 ZNF213O14771 459 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 FAM89AQ96GI7 184 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 PTCH1Q13635 1447 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 USP16Q9Y5T5 823 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 SPATA31A3Q5VYP0 1347 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 ADAMTS13Q76LX8 1427 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 SDF4Q9BRK5 362 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 SH2B1Q9NRF2 756 aaPredicted RBP16.39■□□□□ 0.21
CIITA-213ENST00000618327 LIMCH1Q9UPQ0 1083 aa16.39■□□□□ 0.21
CIITA-213ENST00000618327 ST5P78524 1137 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 CEBPZQ03701 1054 aaKnown RBP16.38■□□□□ 0.21
CIITA-213ENST00000618327 USP21Q9UK80 565 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 C6orf229H3BNL8 230 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 KRT85P78386 507 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 TFCP2Q12800 502 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 PDIA4P13667 645 aaKnown RBP16.38■□□□□ 0.21
CIITA-213ENST00000618327 ATP2B2Q01814 1243 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 GCKRQ14397 625 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 TPTE2Q6XPS3 522 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 NYXQ9GZU5 481 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 MED14O60244 1454 aa16.38■□□□□ 0.21
CIITA-213ENST00000618327 PNMA6EA0A0J9YXQ4 647 aa16.37■□□□□ 0.21
CIITA-213ENST00000618327 MCM4P33991 863 aa16.37■□□□□ 0.21
CIITA-213ENST00000618327 STK38Q15208 465 aa16.37■□□□□ 0.21
CIITA-213ENST00000618327 USP5P45974 858 aa16.37■□□□□ 0.21
CIITA-213ENST00000618327 DEPDC5O75140 1603 aa16.37■□□□□ 0.21
CIITA-213ENST00000618327 CPSF1Q10570 1443 aaKnown RBP16.37■□□□□ 0.21
CIITA-213ENST00000618327 DDX11Q96FC9 970 aa16.37■□□□□ 0.21
CIITA-213ENST00000618327 FAM13BQ9NYF5 915 aa16.37■□□□□ 0.21
CIITA-213ENST00000618327 CCDC47Q96A33 483 aaKnown RBP16.36■□□□□ 0.21
CIITA-213ENST00000618327 KIAA1210Q9ULL0 1709 aa16.36■□□□□ 0.21
CIITA-213ENST00000618327 GNPATO15228 680 aa16.36■□□□□ 0.21
CIITA-213ENST00000618327 ZFYP08048 801 aaPredicted RBP16.36■□□□□ 0.21
CIITA-213ENST00000618327 ZSCAN29Q8IWY8 852 aaPredicted RBP16.36■□□□□ 0.21
CIITA-213ENST00000618327 SUCLG2Q96I99 432 aa16.36■□□□□ 0.21
CIITA-213ENST00000618327 HMG20BQ9P0W2 317 aa16.36■□□□□ 0.21
CIITA-213ENST00000618327 CCNL1Q9UK58 526 aaPredicted RBP16.36■□□□□ 0.21
CIITA-213ENST00000618327 PES1O00541 588 aaKnown RBP16.35■□□□□ 0.21
CIITA-213ENST00000618327 BRPF1P55201 1214 aaPredicted RBP16.35■□□□□ 0.21
CIITA-213ENST00000618327 OTUD7AQ8TE49 926 aaPredicted RBP16.35■□□□□ 0.21
CIITA-213ENST00000618327 USP44Q9H0E7 712 aa16.35■□□□□ 0.21
CIITA-213ENST00000618327 TPM3P06753 285 aa16.35■□□□□ 0.21
CIITA-213ENST00000618327 CCDC87Q9NVE4 849 aa16.35■□□□□ 0.21
CIITA-213ENST00000618327 KINO60870 393 aaKnown RBP16.35■□□□□ 0.21
CIITA-213ENST00000618327 PNPLA6Q8IY17 1366 aa16.35■□□□□ 0.21
CIITA-213ENST00000618327 PARP10Q53GL7 1025 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 USP31Q70CQ4 1352 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 SPATA31D1Q6ZQQ2 1576 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 TCEAL9Q9UHQ7 104 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 SH3TC1Q8TE82 1336 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 PAG1Q9NWQ8 432 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 JMYQ8N9B5 988 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 KLHDC4Q8TBB5 520 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 ZNF287Q9HBT7 754 aa16.34■□□□□ 0.21
CIITA-213ENST00000618327 EYA2O00167 538 aa16.33■□□□□ 0.21
CIITA-213ENST00000618327 POLR3DP05423 398 aaPredicted RBP16.33■□□□□ 0.21
CIITA-213ENST00000618327 HELBQ8NG08 1087 aaPredicted RBP16.33■□□□□ 0.21
CIITA-213ENST00000618327 LARP6Q9BRS8 491 aaKnown RBP16.33■□□□□ 0.21
CIITA-213ENST00000618327 RNF41Q9H4P4 317 aaPredicted RBP16.33■□□□□ 0.21
CIITA-213ENST00000618327 A0A0U1RQG5 324 aaPredicted RBP16.33■□□□□ 0.2
CIITA-213ENST00000618327 NEURL1BA8MQ27 555 aa16.33■□□□□ 0.2
CIITA-213ENST00000618327 LETM1O95202 739 aaPredicted RBP16.33■□□□□ 0.2
CIITA-213ENST00000618327 ZNF771Q7L3S4 317 aaPredicted RBP16.33■□□□□ 0.2
CIITA-213ENST00000618327 MCMDC2Q4G0Z9 681 aa16.33■□□□□ 0.2
CIITA-213ENST00000618327 NEK1Q96PY6 1258 aa16.33■□□□□ 0.2
CIITA-213ENST00000618327 MRE11P49959 708 aa16.33■□□□□ 0.2
CIITA-213ENST00000618327 ANAPC15P60006 121 aa16.33■□□□□ 0.2
CIITA-213ENST00000618327 HAND2P61296 217 aa16.32■□□□□ 0.2
CIITA-213ENST00000618327 TRAPPC3LQ5T215 181 aa16.32■□□□□ 0.2
CIITA-213ENST00000618327 FAM43AQ8N2R8 423 aa16.32■□□□□ 0.2
CIITA-213ENST00000618327 ZNF219Q9P2Y4 722 aaPredicted RBP16.32■□□□□ 0.2
CIITA-213ENST00000618327 IQSEC3Q9UPP2 1182 aaPredicted RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms