RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 ARFGEF2Q9Y6D5 1785 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 COL3A1P02461 1466 aaPredicted RBP11.34□□□□□ -0.59
GPC6-202ENST00000617456 KLRG2A4D1S0 409 aaPredicted RBP11.34□□□□□ -0.59
GPC6-202ENST00000617456 NBPF26B4DH59 902 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 ALDH1B1P30837 517 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 EIF6P56537 245 aaKnown RBP11.34□□□□□ -0.59
GPC6-202ENST00000617456 HLFQ16534 295 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 NBPF10Q6P3W6 841 aaKnown RBP11.34□□□□□ -0.59
GPC6-202ENST00000617456 GPC2Q8N158 579 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 NGEFQ8N5V2 710 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 NBPF15Q8N660 670 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 JDP2Q8WYK2 163 aa11.34□□□□□ -0.59
GPC6-202ENST00000617456 SIPA1L3O60292 1781 aaPredicted RBP11.33□□□□□ -0.59
GPC6-202ENST00000617456 CCDC85CA6NKD9 419 aa11.33□□□□□ -0.6
GPC6-202ENST00000617456 LMOD1P29536 600 aaPredicted RBP11.33□□□□□ -0.6
GPC6-202ENST00000617456 RTF1Q92541 710 aaKnown RBP11.33□□□□□ -0.6
GPC6-202ENST00000617456 DDX21Q9NR30 783 aaKnown RBP eCLIP11.33□□□□□ -0.6
GPC6-202ENST00000617456 GTF3C3Q9Y5Q9 886 aa11.33□□□□□ -0.6
GPC6-202ENST00000617456 TCERG1O14776 1098 aaKnown RBP11.32□□□□□ -0.6
GPC6-202ENST00000617456 NEFLP07196 543 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 EPS15P42566 896 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 DCTN1Q14203 1278 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 CYP4F22Q6NT55 531 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 NUTM1Q86Y26 1132 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 LARGE2Q8N3Y3 721 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 CAPNS2Q96L46 248 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 BEGAINQ9BUH8 593 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 RSPH6AQ9H0K4 717 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 TSKSQ9UJT2 592 aa11.32□□□□□ -0.6
GPC6-202ENST00000617456 ADAMTSL1Q8N6G6 1762 aa11.31□□□□□ -0.6
GPC6-202ENST00000617456 ABCC12Q96J65 1359 aa11.31□□□□□ -0.6
GPC6-202ENST00000617456 TRAF5O00463 557 aa11.31□□□□□ -0.6
GPC6-202ENST00000617456 HTATSF1O43719 755 aaKnown RBP11.31□□□□□ -0.6
GPC6-202ENST00000617456 SLC34A2O95436 690 aa11.31□□□□□ -0.6
GPC6-202ENST00000617456 SLC51AQ86UW1 340 aa11.31□□□□□ -0.6
GPC6-202ENST00000617456 RPGRQ92834 1020 aaKnown RBP11.31□□□□□ -0.6
GPC6-202ENST00000617456 PSMD1Q99460 953 aa11.31□□□□□ -0.6
GPC6-202ENST00000617456 U2AF1L5P0DN76 240 aaPredicted RBP11.3□□□□□ -0.6
GPC6-202ENST00000617456 PPP2R1AP30153 589 aa11.3□□□□□ -0.6
GPC6-202ENST00000617456 ECE1P42892 770 aa11.3□□□□□ -0.6
GPC6-202ENST00000617456 U2AF1Q01081 240 aaKnown RBP eCLIP11.3□□□□□ -0.6
GPC6-202ENST00000617456 GPR101Q96P66 508 aaPredicted RBP11.3□□□□□ -0.6
GPC6-202ENST00000617456 NYXQ9GZU5 481 aa11.3□□□□□ -0.6
GPC6-202ENST00000617456 MIS18AQ9NYP9 233 aa11.3□□□□□ -0.6
GPC6-202ENST00000617456 AOC2O75106 756 aa11.29□□□□□ -0.6
GPC6-202ENST00000617456 GPTP24298 496 aa11.29□□□□□ -0.6
GPC6-202ENST00000617456 SCNN1DP51172 638 aa11.29□□□□□ -0.6
GPC6-202ENST00000617456 CFAP44Q96MT7 982 aa11.29□□□□□ -0.6
GPC6-202ENST00000617456 COL4A5P29400 1685 aa11.29□□□□□ -0.6
GPC6-202ENST00000617456 RGL2O15211 777 aa11.28□□□□□ -0.6
GPC6-202ENST00000617456 MLLT1Q03111 559 aaPredicted RBP11.28□□□□□ -0.6
GPC6-202ENST00000617456 CRY2Q49AN0 593 aa11.28□□□□□ -0.6
GPC6-202ENST00000617456 CST9Q5W186 159 aa11.28□□□□□ -0.6
GPC6-202ENST00000617456 CC2D2BQ6DHV5 1058 aa11.28□□□□□ -0.6
GPC6-202ENST00000617456 NIM1KQ8IY84 436 aa11.28□□□□□ -0.6
GPC6-202ENST00000617456 RBM17Q96I25 401 aaKnown RBP11.28□□□□□ -0.6
GPC6-202ENST00000617456 PNNQ9H307 717 aaKnown RBP11.28□□□□□ -0.6
GPC6-202ENST00000617456 RRP7AQ9Y3A4 280 aaKnown RBP11.28□□□□□ -0.6
GPC6-202ENST00000617456 SNED1Q8TER0 1413 aa11.27□□□□□ -0.6
GPC6-202ENST00000617456 PPEF1O14829 653 aaPredicted RBP11.27□□□□□ -0.61
GPC6-202ENST00000617456 PPIP5K2O43314 1243 aa11.27□□□□□ -0.61
GPC6-202ENST00000617456 SLC4A2P04920 1241 aa11.27□□□□□ -0.61
GPC6-202ENST00000617456 MYL6BP14649 208 aa11.27□□□□□ -0.61
GPC6-202ENST00000617456 TAF7Q15545 349 aaPredicted RBP11.27□□□□□ -0.61
GPC6-202ENST00000617456 KIF6Q6ZMV9 814 aa11.27□□□□□ -0.61
GPC6-202ENST00000617456 TTLL7Q6ZT98 887 aa11.27□□□□□ -0.61
GPC6-202ENST00000617456 USP50Q70EL3 339 aaPredicted RBP11.27□□□□□ -0.61
GPC6-202ENST00000617456 ZBTB3Q9H5J0 574 aa11.27□□□□□ -0.61
GPC6-202ENST00000617456 TLL2Q9Y6L7 1015 aa11.27□□□□□ -0.61
GPC6-202ENST00000617456 LTBP1Q14766 1721 aa11.26□□□□□ -0.61
GPC6-202ENST00000617456 CELF2O95319 508 aaKnown RBP11.26□□□□□ -0.61
GPC6-202ENST00000617456 PDIA4P13667 645 aaKnown RBP11.26□□□□□ -0.61
GPC6-202ENST00000617456 AOC3Q16853 763 aa11.26□□□□□ -0.61
GPC6-202ENST00000617456 SUSD4Q5VX71 490 aa11.26□□□□□ -0.61
GPC6-202ENST00000617456 ZNF408Q9H9D4 720 aa11.26□□□□□ -0.61
GPC6-202ENST00000617456 MAP3K15Q6ZN16 1313 aa11.26□□□□□ -0.61
GPC6-202ENST00000617456 ERVV-1B6SEH8 477 aa11.25□□□□□ -0.61
GPC6-202ENST00000617456 NEFMP07197 916 aa11.25□□□□□ -0.61
GPC6-202ENST00000617456 HOXA10P31260 410 aaPredicted RBP11.25□□□□□ -0.61
GPC6-202ENST00000617456 RALBP1Q15311 655 aa11.25□□□□□ -0.61
GPC6-202ENST00000617456 C3orf67Q6ZVT6 689 aa11.25□□□□□ -0.61
GPC6-202ENST00000617456 GLIS2Q9BZE0 524 aaPredicted RBP11.25□□□□□ -0.61
GPC6-202ENST00000617456 TMX4Q9H1E5 349 aaPredicted RBP11.25□□□□□ -0.61
GPC6-202ENST00000617456 ADARB2Q9NS39 739 aaKnown RBP11.25□□□□□ -0.61
GPC6-202ENST00000617456 UBN2Q6ZU65 1347 aa11.25□□□□□ -0.61
GPC6-202ENST00000617456 MAP2K2P36507 400 aa11.24□□□□□ -0.61
GPC6-202ENST00000617456 GMPSP49915 693 aaPredicted RBP11.24□□□□□ -0.61
GPC6-202ENST00000617456 GRIPAP1Q4V328 841 aa11.24□□□□□ -0.61
GPC6-202ENST00000617456 CRAMP1Q96RY5 1269 aa11.24□□□□□ -0.61
GPC6-202ENST00000617456 MCOLN1Q9GZU1 580 aa11.24□□□□□ -0.61
GPC6-202ENST00000617456 GPRC5DQ9NZD1 345 aa11.24□□□□□ -0.61
GPC6-202ENST00000617456 NTSR2O95665 410 aa11.23□□□□□ -0.61
GPC6-202ENST00000617456 ATXN8OSP0DMR3 200 aa11.23□□□□□ -0.61
GPC6-202ENST00000617456 RGS19P49795 217 aa11.23□□□□□ -0.61
GPC6-202ENST00000617456 CXCL9Q07325 125 aa11.23□□□□□ -0.61
GPC6-202ENST00000617456 SAPCD2Q86UD0 394 aa11.23□□□□□ -0.61
GPC6-202ENST00000617456 BCL2L13Q9BXK5 485 aa11.23□□□□□ -0.61
GPC6-202ENST00000617456 TRPM7Q96QT4 1865 aa11.23□□□□□ -0.61
GPC6-202ENST00000617456 RAD17O75943 681 aa11.22□□□□□ -0.61
GPC6-202ENST00000617456 HOXD11P31277 338 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms