RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IGKV5-2P06315 115 aa17.32■□□□□ 0.36
LINC00540-202ENST00000616974 ISCA1Q9BUE6 129 aa17.31■□□□□ 0.36
LINC00540-202ENST00000616974 NPHP1O15259 732 aa17.3■□□□□ 0.36
LINC00540-202ENST00000616974 FKBP5Q13451 457 aaPredicted RBP17.3■□□□□ 0.36
LINC00540-202ENST00000616974 MRPL50Q8N5N7 158 aaKnown RBP17.3■□□□□ 0.36
LINC00540-202ENST00000616974 HCLS1P14317 486 aaPredicted RBP17.3■□□□□ 0.36
LINC00540-202ENST00000616974 FAM89AQ96GI7 184 aa17.3■□□□□ 0.36
LINC00540-202ENST00000616974 TNNQ9UQP3 1299 aa17.29■□□□□ 0.36
LINC00540-202ENST00000616974 ARFGEF1Q9Y6D6 1849 aa17.29■□□□□ 0.36
LINC00540-202ENST00000616974 OLFM4Q6UX06 510 aa17.29■□□□□ 0.36
LINC00540-202ENST00000616974 KSR2Q6VAB6 950 aa17.29■□□□□ 0.36
LINC00540-202ENST00000616974 C2CD5Q86YS7 1000 aa17.28■□□□□ 0.36
LINC00540-202ENST00000616974 METTL22Q9BUU2 404 aaPredicted RBP17.28■□□□□ 0.36
LINC00540-202ENST00000616974 CCDC88AQ3V6T2 1871 aa17.27■□□□□ 0.36
LINC00540-202ENST00000616974 GPR162Q16538 588 aa17.27■□□□□ 0.36
LINC00540-202ENST00000616974 TPTE2Q6XPS3 522 aa17.27■□□□□ 0.36
LINC00540-202ENST00000616974 BCS1LQ9Y276 419 aa17.27■□□□□ 0.36
LINC00540-202ENST00000616974 BCAR3O75815 825 aa17.27■□□□□ 0.35
LINC00540-202ENST00000616974 TGFB2P61812 414 aa17.27■□□□□ 0.35
LINC00540-202ENST00000616974 BRIP1Q9BX63 1249 aa17.27■□□□□ 0.35
LINC00540-202ENST00000616974 ZNF219Q9P2Y4 722 aaPredicted RBP17.27■□□□□ 0.35
LINC00540-202ENST00000616974 TRMT112Q9UI30 125 aaKnown RBP17.27■□□□□ 0.35
LINC00540-202ENST00000616974 CHD4Q14839 1912 aa17.27■□□□□ 0.35
LINC00540-202ENST00000616974 RGL2O15211 777 aa17.26■□□□□ 0.35
LINC00540-202ENST00000616974 GTF2E1P29083 439 aaPredicted RBP17.26■□□□□ 0.35
LINC00540-202ENST00000616974 SRGNP10124 158 aa17.26■□□□□ 0.35
LINC00540-202ENST00000616974 RARSP54136 660 aaKnown RBP17.26■□□□□ 0.35
LINC00540-202ENST00000616974 ST5P78524 1137 aa17.26■□□□□ 0.35
LINC00540-202ENST00000616974 UTP14AQ9BVJ6 771 aaKnown RBP17.26■□□□□ 0.35
LINC00540-202ENST00000616974 MYH3P11055 1940 aa17.25■□□□□ 0.35
LINC00540-202ENST00000616974 DNAAF4Q8WXU2 420 aa17.25■□□□□ 0.35
LINC00540-202ENST00000616974 ZNF622Q969S3 477 aaKnown RBP eCLIP17.25■□□□□ 0.35
LINC00540-202ENST00000616974 SMC4Q9NTJ3 1288 aa17.25■□□□□ 0.35
LINC00540-202ENST00000616974 NEURL1BA8MQ27 555 aa17.24■□□□□ 0.35
LINC00540-202ENST00000616974 SBF1O95248 1867 aa17.24■□□□□ 0.35
LINC00540-202ENST00000616974 PARP10Q53GL7 1025 aa17.24■□□□□ 0.35
LINC00540-202ENST00000616974 HSP90AB3PQ58FF7 597 aa17.23■□□□□ 0.35
LINC00540-202ENST00000616974 CCDC85AQ96PX6 553 aaPredicted RBP17.23■□□□□ 0.35
LINC00540-202ENST00000616974 KLRG2A4D1S0 409 aaPredicted RBP17.23■□□□□ 0.35
LINC00540-202ENST00000616974 H0YIN7 160 aa17.23■□□□□ 0.35
LINC00540-202ENST00000616974 DDX58O95786 925 aaKnown RBP17.23■□□□□ 0.35
LINC00540-202ENST00000616974 SLC4A10Q6U841 1118 aa17.23■□□□□ 0.35
LINC00540-202ENST00000616974 PPP1R42Q7Z4L9 355 aa17.23■□□□□ 0.35
LINC00540-202ENST00000616974 PIM2Q9P1W9 311 aa17.23■□□□□ 0.35
LINC00540-202ENST00000616974 NOB1Q9ULX3 412 aaKnown RBP17.23■□□□□ 0.35
LINC00540-202ENST00000616974 SPEF2Q9C093 1822 aa17.22■□□□□ 0.35
LINC00540-202ENST00000616974 BEND3Q5T5X7 828 aa17.22■□□□□ 0.35
LINC00540-202ENST00000616974 IBTKQ9P2D0 1353 aaPredicted RBP17.22■□□□□ 0.35
LINC00540-202ENST00000616974 SH3TC1Q8TE82 1336 aa17.22■□□□□ 0.35
LINC00540-202ENST00000616974 PDE6BP35913 854 aa17.21■□□□□ 0.35
LINC00540-202ENST00000616974 TRIM28Q13263 835 aaKnown RBP17.21■□□□□ 0.35
LINC00540-202ENST00000616974 NYXQ9GZU5 481 aa17.21■□□□□ 0.35
LINC00540-202ENST00000616974 PRELPP51888 382 aa17.21■□□□□ 0.35
LINC00540-202ENST00000616974 CRY2Q49AN0 593 aa17.21■□□□□ 0.35
LINC00540-202ENST00000616974 FER1L6Q2WGJ9 1857 aa17.21■□□□□ 0.34
LINC00540-202ENST00000616974 CWC25Q9NXE8 425 aaPredicted RBP17.2■□□□□ 0.34
LINC00540-202ENST00000616974 C21orf2O43822 256 aa17.2■□□□□ 0.34
LINC00540-202ENST00000616974 ALDH1L2Q3SY69 923 aa17.2■□□□□ 0.34
LINC00540-202ENST00000616974 DALRD3Q5D0E6 543 aaKnown RBP17.2■□□□□ 0.34
LINC00540-202ENST00000616974 PRPF40BQ6NWY9 871 aaKnown RBP17.2■□□□□ 0.34
LINC00540-202ENST00000616974 UBE3BQ7Z3V4 1068 aa17.2■□□□□ 0.34
LINC00540-202ENST00000616974 CCDC191Q8NCU4 936 aa17.2■□□□□ 0.34
LINC00540-202ENST00000616974 IRS4O14654 1257 aaPredicted RBP17.19■□□□□ 0.34
LINC00540-202ENST00000616974 GCKRQ14397 625 aa17.19■□□□□ 0.34
LINC00540-202ENST00000616974 SLC10A5Q5PT55 438 aa17.19■□□□□ 0.34
LINC00540-202ENST00000616974 TTLL6Q8N841 843 aa17.19■□□□□ 0.34
LINC00540-202ENST00000616974 CASP7P55210 303 aa17.18■□□□□ 0.34
LINC00540-202ENST00000616974 RASSF7Q02833 373 aa17.18■□□□□ 0.34
LINC00540-202ENST00000616974 ZBTB38Q8NAP3 1195 aaPredicted RBP17.18■□□□□ 0.34
LINC00540-202ENST00000616974 MASTLQ96GX5 879 aa17.18■□□□□ 0.34
LINC00540-202ENST00000616974 CHMP4AQ9BY43 222 aa17.18■□□□□ 0.34
LINC00540-202ENST00000616974 PCCAP05165 728 aaPredicted RBP17.17■□□□□ 0.34
LINC00540-202ENST00000616974 LINS1Q8NG48 757 aa17.17■□□□□ 0.34
LINC00540-202ENST00000616974 FRAT1Q92837 279 aaPredicted RBP17.17■□□□□ 0.34
LINC00540-202ENST00000616974 SEC31BQ9NQW1 1179 aa17.17■□□□□ 0.34
LINC00540-202ENST00000616974 CEP350Q5VT06 3117 aa17.17■□□□□ 0.34
LINC00540-202ENST00000616974 RIC1Q4ADV7 1423 aa17.17■□□□□ 0.34
LINC00540-202ENST00000616974 NEXNQ0ZGT2 675 aa17.17■□□□□ 0.34
LINC00540-202ENST00000616974 EPHA10Q5JZY3 1008 aa17.17■□□□□ 0.34
LINC00540-202ENST00000616974 ABCC4O15439 1325 aa17.16■□□□□ 0.34
LINC00540-202ENST00000616974 NPR1P16066 1061 aa17.16■□□□□ 0.34
LINC00540-202ENST00000616974 C7orf43Q8WVR3 580 aa17.16■□□□□ 0.34
LINC00540-202ENST00000616974 CLUAP1Q96AJ1 413 aa17.16■□□□□ 0.34
LINC00540-202ENST00000616974 NLRP3Q96P20 1036 aa17.16■□□□□ 0.34
LINC00540-202ENST00000616974 H7C1W4 665 aa17.15■□□□□ 0.34
LINC00540-202ENST00000616974 NFKBIEO00221 500 aa17.15■□□□□ 0.34
LINC00540-202ENST00000616974 NBPF7P0C2Y1 421 aaPredicted RBP17.15■□□□□ 0.34
LINC00540-202ENST00000616974 ARHGAP27Q6ZUM4 889 aa17.15■□□□□ 0.34
LINC00540-202ENST00000616974 CELF1Q92879 486 aaKnown RBP17.15■□□□□ 0.34
LINC00540-202ENST00000616974 CT47B1P0C2W7 299 aaPredicted RBP17.15■□□□□ 0.34
LINC00540-202ENST00000616974 STYK1Q6J9G0 422 aa17.15■□□□□ 0.34
LINC00540-202ENST00000616974 PCNTO95613 3336 aa17.15■□□□□ 0.34
LINC00540-202ENST00000616974 TRIM27P14373 513 aa17.14■□□□□ 0.33
LINC00540-202ENST00000616974 KAZALD1Q96I82 304 aa17.14■□□□□ 0.33
LINC00540-202ENST00000616974 PTPRCP08575 1304 aa17.14■□□□□ 0.33
LINC00540-202ENST00000616974 SNED1Q8TER0 1413 aa17.14■□□□□ 0.33
LINC00540-202ENST00000616974 RPGRQ92834 1020 aaKnown RBP17.14■□□□□ 0.33
LINC00540-202ENST00000616974 HOXA10P31260 410 aaPredicted RBP17.13■□□□□ 0.33
LINC00540-202ENST00000616974 RNF123Q5XPI4 1314 aa17.12■□□□□ 0.33
LINC00540-202ENST00000616974 PLIN1O60240 522 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms