RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ELF2Q15723 593 aa12.07□□□□□ -0.48
VPS39-214ENST00000614932 ESCO1Q5FWF5 840 aa12.07□□□□□ -0.48
VPS39-214ENST00000614932 BSDC1Q9NW68 430 aaPredicted RBP12.07□□□□□ -0.48
VPS39-214ENST00000614932 ZBTB7BO15156 539 aaPredicted RBP12.07□□□□□ -0.48
VPS39-214ENST00000614932 V9GYY5 206 aaPredicted RBP12.07□□□□□ -0.48
VPS39-214ENST00000614932 ST5P78524 1137 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 BIRC2Q13490 618 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 ZKSCAN8Q15776 578 aaPredicted RBP12.06□□□□□ -0.48
VPS39-214ENST00000614932 IQUBQ8NA54 791 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 PPM1EQ8WY54 764 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 CALR3Q96L12 384 aaKnown RBP12.06□□□□□ -0.48
VPS39-214ENST00000614932 AKAP12Q02952 1782 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 POLR3GO15318 223 aaPredicted RBP12.06□□□□□ -0.48
VPS39-214ENST00000614932 PNMA6AP0CW24 399 aaPredicted RBP12.06□□□□□ -0.48
VPS39-214ENST00000614932 PLCB2Q00722 1185 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 PPP2R5AQ15172 486 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 JMYQ8N9B5 988 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.06□□□□□ -0.48
VPS39-214ENST00000614932 SLC4A10Q6U841 1118 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 ANKLE2Q86XL3 938 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 SPC24Q8NBT2 197 aa12.06□□□□□ -0.48
VPS39-214ENST00000614932 DLG5Q8TDM6 1919 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 PEAK1Q9H792 1746 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 HCLS1P14317 486 aaPredicted RBP12.05□□□□□ -0.48
VPS39-214ENST00000614932 H2AFXP16104 143 aaPredicted RBP12.05□□□□□ -0.48
VPS39-214ENST00000614932 HDAC1Q13547 482 aaPredicted RBP12.05□□□□□ -0.48
VPS39-214ENST00000614932 CEP135Q66GS9 1140 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 MMS22LQ6ZRQ5 1243 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 TSPYL4Q9UJ04 414 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.05□□□□□ -0.48
VPS39-214ENST00000614932 RIMS1Q86UR5 1692 aaKnown RBP12.05□□□□□ -0.48
VPS39-214ENST00000614932 F6X3S4 739 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 DIP2AQ14689 1571 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 C11orf91Q3C1V1 193 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 NBPF6Q5VWK0 638 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 NBPF5PQ86XG9 351 aaPredicted RBP12.05□□□□□ -0.48
VPS39-214ENST00000614932 SIRT2Q8IXJ6 389 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 CHAMP1Q96JM3 812 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 NBPF4Q96M43 638 aa12.05□□□□□ -0.48
VPS39-214ENST00000614932 SLC4A2P04920 1241 aa12.04□□□□□ -0.48
VPS39-214ENST00000614932 ARHGAP23Q9P227 1491 aa12.04□□□□□ -0.48
VPS39-214ENST00000614932 SETQ01105 290 aaPredicted RBP12.04□□□□□ -0.48
VPS39-214ENST00000614932 G2E3Q7L622 706 aa12.04□□□□□ -0.48
VPS39-214ENST00000614932 AK7Q96M32 723 aa12.04□□□□□ -0.48
VPS39-214ENST00000614932 SLIT1O75093 1534 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 KLHL33A6NCF5 533 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 HOXC9P31274 260 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 PSME1Q06323 249 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 TPD52L1Q16890 204 aaPredicted RBP12.03□□□□□ -0.48
VPS39-214ENST00000614932 MAP9Q49MG5 647 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 ORAI2Q96SN7 254 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 PHF8Q9UPP1 1060 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 CHL1O00533 1208 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 PTGS1P23219 599 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 BMP2KLQ5H9B9 411 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 SSH2Q76I76 1423 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 TTC21AQ8NDW8 1320 aa12.03□□□□□ -0.48
VPS39-214ENST00000614932 FLT4P35916 1363 aa12.02□□□□□ -0.48
VPS39-214ENST00000614932 IVLP07476 585 aa12.02□□□□□ -0.48
VPS39-214ENST00000614932 TPRNQ4KMQ1 711 aa12.02□□□□□ -0.48
VPS39-214ENST00000614932 CHD1LQ86WJ1 897 aa12.02□□□□□ -0.48
VPS39-214ENST00000614932 ZBTB12Q9Y330 459 aaPredicted RBP12.02□□□□□ -0.48
VPS39-214ENST00000614932 SETD1BQ9UPS6 1966 aaKnown RBP12.02□□□□□ -0.48
VPS39-214ENST00000614932 USP31Q70CQ4 1352 aa12.02□□□□□ -0.49
VPS39-214ENST00000614932 SLU7O95391 586 aaKnown RBP12.02□□□□□ -0.49
VPS39-214ENST00000614932 ZGPATQ8N5A5 531 aaKnown RBP12.02□□□□□ -0.49
VPS39-214ENST00000614932 CEP170BQ9Y4F5 1589 aaPredicted RBP12.02□□□□□ -0.49
VPS39-214ENST00000614932 AP5Z1O43299 807 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 TBC1D22AQ8WUA7 517 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 LRRC59Q96AG4 307 aaKnown RBP12.01□□□□□ -0.49
VPS39-214ENST00000614932 BORCS6Q96GS4 357 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 PSD3Q9NYI0 1048 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 EXOC6BQ9Y2D4 811 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 SBNO1A3KN83 1393 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 EIF3CLB5ME19 914 aaKnown RBP12.01□□□□□ -0.49
VPS39-214ENST00000614932 LIG1P18858 919 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 ACTN2P35609 894 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 CLCN6P51797 869 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 CCDC183Q5T5S1 534 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 C16orf71Q8IYS4 520 aaPredicted RBP12.01□□□□□ -0.49
VPS39-214ENST00000614932 OTUD6BQ8N6M0 293 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 EIF3CQ99613 913 aaKnown RBP12.01□□□□□ -0.49
VPS39-214ENST00000614932 NRKQ7Z2Y5 1582 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 PTCH1Q13635 1447 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 NUCB1Q02818 461 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 ITFG2Q969R8 447 aa12.01□□□□□ -0.49
VPS39-214ENST00000614932 API5Q9BZZ5 524 aaKnown RBP12.01□□□□□ -0.49
VPS39-214ENST00000614932 ABCC4O15439 1325 aa12□□□□□ -0.49
VPS39-214ENST00000614932 H0YHG0 523 aa12□□□□□ -0.49
VPS39-214ENST00000614932 MPHOSPH10O00566 681 aaKnown RBP12□□□□□ -0.49
VPS39-214ENST00000614932 CPP00450 1065 aa12□□□□□ -0.49
VPS39-214ENST00000614932 SARNPP82979 210 aaKnown RBP12□□□□□ -0.49
VPS39-214ENST00000614932 ZNF428Q96B54 188 aa12□□□□□ -0.49
VPS39-214ENST00000614932 MEIS3Q99687 375 aa12□□□□□ -0.49
VPS39-214ENST00000614932 TOPAZ1Q8N9V7 1692 aa12□□□□□ -0.49
VPS39-214ENST00000614932 ERBB3P21860 1342 aa12□□□□□ -0.49
VPS39-214ENST00000614932 EXOC4Q96A65 974 aa12□□□□□ -0.49
VPS39-214ENST00000614932 UBXN6Q9BZV1 441 aa12□□□□□ -0.49
VPS39-214ENST00000614932 SMARCA5O60264 1052 aaPredicted RBP11.99□□□□□ -0.49
VPS39-214ENST00000614932 ZRANB2O95218 330 aaKnown RBP eCLIP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms