RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 COL4A5P29400 1685 aa7.37□□□□□ -1.23
CPNE3-208ENST00000614678 ERVV-1B6SEH8 477 aa7.37□□□□□ -1.23
CPNE3-208ENST00000614678 H0YIN7 160 aa7.37□□□□□ -1.23
CPNE3-208ENST00000614678 TCIRG1Q13488 830 aa7.37□□□□□ -1.23
CPNE3-208ENST00000614678 GPR101Q96P66 508 aaPredicted RBP7.37□□□□□ -1.23
CPNE3-208ENST00000614678 BABAM1Q9NWV8 329 aa7.37□□□□□ -1.23
CPNE3-208ENST00000614678 TPTE2Q6XPS3 522 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 LAMB2P55268 1798 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 DLEC1Q9Y238 1755 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 C9orf131Q5VYM1 1079 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 RIC3Q7Z5B4 369 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 TTLL6Q8N841 843 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 SEC31BQ9NQW1 1179 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 TRMT112Q9UI30 125 aaKnown RBP7.36□□□□□ -1.23
CPNE3-208ENST00000614678 ATP10DQ9P241 1426 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 PLBD2Q8NHP8 589 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 C7orf43Q8WVR3 580 aa7.36□□□□□ -1.23
CPNE3-208ENST00000614678 NMRK2Q9NPI5 230 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 ZNF277Q9NRM2 450 aaPredicted RBP7.35□□□□□ -1.23
CPNE3-208ENST00000614678 ZNF652Q9Y2D9 606 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 ANKRD36CQ5JPF3 1778 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 DDX60Q8IY21 1712 aaKnown RBP7.35□□□□□ -1.23
CPNE3-208ENST00000614678 ST5P78524 1137 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 SLFN5Q08AF3 891 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 WDR63Q8IWG1 891 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 ISCA1Q9BUE6 129 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 ARFGEF1Q9Y6D6 1849 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 HNRNPUQ00839 825 aaKnown RBP eCLIP7.35□□□□□ -1.23
CPNE3-208ENST00000614678 FLIIQ13045 1269 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 CELF1Q92879 486 aaKnown RBP7.35□□□□□ -1.23
CPNE3-208ENST00000614678 RNF181Q9P0P0 153 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 CCER2I3L3R5 266 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 GOLGA2Q08379 1002 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 SSH1Q8WYL5 1049 aa7.35□□□□□ -1.23
CPNE3-208ENST00000614678 UTP14AQ9BVJ6 771 aaKnown RBP7.35□□□□□ -1.23
CPNE3-208ENST00000614678 CCDC30Q5VVM6 783 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 HYPKQ9NX55 129 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 KLRG2A4D1S0 409 aaPredicted RBP7.34□□□□□ -1.23
CPNE3-208ENST00000614678 DCAF8L1A6NGE4 600 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 SNAP23O00161 211 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 GRIN3BO60391 1043 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 FKBP5Q13451 457 aaPredicted RBP7.34□□□□□ -1.23
CPNE3-208ENST00000614678 CRY2Q49AN0 593 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 CENPFP49454 3210 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 ERBB4Q15303 1308 aa7.34□□□□□ -1.23
CPNE3-208ENST00000614678 PDE6BP35913 854 aa7.34□□□□□ -1.24
CPNE3-208ENST00000614678 MASTLQ96GX5 879 aa7.34□□□□□ -1.24
CPNE3-208ENST00000614678 ABCC4O15439 1325 aa7.34□□□□□ -1.24
CPNE3-208ENST00000614678 HOXB7P09629 217 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 IL16Q14005 1332 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 POTEIP0CG38 1075 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 POTEJP0CG39 1038 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 EPHA10Q5JZY3 1008 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 SLC4A10Q6U841 1118 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 FER1L6Q2WGJ9 1857 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 BCAR3O75815 825 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 HTRA3P83110 453 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 UBE3BQ7Z3V4 1068 aa7.33□□□□□ -1.24
CPNE3-208ENST00000614678 METTL22Q9BUU2 404 aaPredicted RBP7.33□□□□□ -1.24
CPNE3-208ENST00000614678 IRS4O14654 1257 aaPredicted RBP7.32□□□□□ -1.24
CPNE3-208ENST00000614678 CALD1Q05682 793 aaKnown RBP7.32□□□□□ -1.24
CPNE3-208ENST00000614678 KCNQ5Q9NR82 932 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 SNED1Q8TER0 1413 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 NEURL1BA8MQ27 555 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 HMGB2P26583 209 aaKnown RBP7.32□□□□□ -1.24
CPNE3-208ENST00000614678 KSR2Q6VAB6 950 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 TRMT2AQ8IZ69 625 aaKnown RBP7.32□□□□□ -1.24
CPNE3-208ENST00000614678 SH3TC1Q8TE82 1336 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 DDNO94850 711 aaPredicted RBP7.32□□□□□ -1.24
CPNE3-208ENST00000614678 NPR1P16066 1061 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 PPP1R42Q7Z4L9 355 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 STK31Q9BXU1 1019 aa7.32□□□□□ -1.24
CPNE3-208ENST00000614678 POTECB2RU33 542 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 MRPL50Q8N5N7 158 aaKnown RBP7.31□□□□□ -1.24
CPNE3-208ENST00000614678 BRCA2P51587 3418 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 ZNF541Q9H0D2 1346 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 SHTN1A0MZ66 631 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 NBPF7P0C2Y1 421 aaPredicted RBP7.31□□□□□ -1.24
CPNE3-208ENST00000614678 RPGRQ92834 1020 aaKnown RBP7.31□□□□□ -1.24
CPNE3-208ENST00000614678 YTHDC1Q96MU7 727 aaKnown RBP7.31□□□□□ -1.24
CPNE3-208ENST00000614678 NLRP3Q96P20 1036 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 GREM2Q9H772 168 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 STYK1Q6J9G0 422 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 KAZALD1Q96I82 304 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 RRAGCQ9HB90 399 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 SPEF2Q9C093 1822 aa7.31□□□□□ -1.24
CPNE3-208ENST00000614678 KIF3CO14782 793 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 CASP7P55210 303 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 PARP10Q53GL7 1025 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 SLC10A5Q5PT55 438 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 BEND3Q5T5X7 828 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 DNAAF4Q8WXU2 420 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 NYXQ9GZU5 481 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 MYH16Q9H6N6 1097 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 AOC3Q16853 763 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 ZBTB38Q8NAP3 1195 aaPredicted RBP7.3□□□□□ -1.24
CPNE3-208ENST00000614678 KLHDC4Q8TBB5 520 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 ZNF594Q96JF6 807 aaPredicted RBP7.3□□□□□ -1.24
CPNE3-208ENST00000614678 PPEF1O14829 653 aaPredicted RBP7.3□□□□□ -1.24
CPNE3-208ENST00000614678 KLRK1P26718 216 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms