RNA–Protein interactions for RNA: ENST00000606782.1

CTSA-213, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-213ENST00000606782 DDX21Q9NR30 783 aaKnown RBP eCLIP17.42■□□□□ 0.38
CTSA-213ENST00000606782 SNED1Q8TER0 1413 aa17.41■□□□□ 0.38
CTSA-213ENST00000606782 FKBP4Q02790 459 aaKnown RBP eCLIP17.41■□□□□ 0.38
CTSA-213ENST00000606782 PPP1R42Q7Z4L9 355 aa17.41■□□□□ 0.38
CTSA-213ENST00000606782 SMC1BQ8NDV3 1235 aa17.41■□□□□ 0.38
CTSA-213ENST00000606782 ANXA1P04083 346 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 ZNF853P0CG23 659 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 KRT24Q2M2I5 525 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 CC2D2BQ6DHV5 1058 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 COPS6Q7L5N1 327 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 CRAMP1Q96RY5 1269 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 MRS2Q9HD23 443 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 RNF123Q5XPI4 1314 aa17.4■□□□□ 0.38
CTSA-213ENST00000606782 HSP90AB3PQ58FF7 597 aa17.39■□□□□ 0.37
CTSA-213ENST00000606782 GRIPAP1Q4V328 841 aa17.38■□□□□ 0.37
CTSA-213ENST00000606782 OLFM4Q6UX06 510 aa17.38■□□□□ 0.37
CTSA-213ENST00000606782 XAGE3Q8WTP9 111 aa17.38■□□□□ 0.37
CTSA-213ENST00000606782 PSMD1Q99460 953 aa17.38■□□□□ 0.37
CTSA-213ENST00000606782 UTP14AQ9BVJ6 771 aaKnown RBP17.38■□□□□ 0.37
CTSA-213ENST00000606782 APAF1O14727 1248 aa17.37■□□□□ 0.37
CTSA-213ENST00000606782 TCIRG1Q13488 830 aa17.37■□□□□ 0.37
CTSA-213ENST00000606782 L3MBTL3Q96JM7 780 aaPredicted RBP17.37■□□□□ 0.37
CTSA-213ENST00000606782 LAS1LQ9Y4W2 734 aaKnown RBP17.37■□□□□ 0.37
CTSA-213ENST00000606782 DDNO94850 711 aaPredicted RBP17.36■□□□□ 0.37
CTSA-213ENST00000606782 C3orf67Q6ZVT6 689 aa17.36■□□□□ 0.37
CTSA-213ENST00000606782 NLRP10Q86W26 655 aa17.36■□□□□ 0.37
CTSA-213ENST00000606782 SYNE4Q8N205 404 aa17.36■□□□□ 0.37
CTSA-213ENST00000606782 NECTIN2Q92692 538 aa17.36■□□□□ 0.37
CTSA-213ENST00000606782 RPGRQ92834 1020 aaKnown RBP17.36■□□□□ 0.37
CTSA-213ENST00000606782 RBM17Q96I25 401 aaKnown RBP17.36■□□□□ 0.37
CTSA-213ENST00000606782 NLRP3Q96P20 1036 aa17.36■□□□□ 0.37
CTSA-213ENST00000606782 ZNF277Q9NRM2 450 aaPredicted RBP17.36■□□□□ 0.37
CTSA-213ENST00000606782 MBIPQ9NS73 344 aa17.36■□□□□ 0.37
CTSA-213ENST00000606782 CHPF2Q9P2E5 772 aa17.36■□□□□ 0.37
CTSA-213ENST00000606782 CALD1Q05682 793 aaKnown RBP17.35■□□□□ 0.37
CTSA-213ENST00000606782 HDGFL1Q5TGJ6 251 aa17.35■□□□□ 0.37
CTSA-213ENST00000606782 IFT57Q9NWB7 429 aa17.35■□□□□ 0.37
CTSA-213ENST00000606782 DBF4Q9UBU7 674 aaPredicted RBP17.35■□□□□ 0.37
CTSA-213ENST00000606782 FZD9O00144 591 aa17.34■□□□□ 0.37
CTSA-213ENST00000606782 IARSP41252 1262 aaKnown RBP17.34■□□□□ 0.37
CTSA-213ENST00000606782 AIMP1Q12904 312 aaKnown RBP17.34■□□□□ 0.37
CTSA-213ENST00000606782 ANKRD36CQ5JPF3 1778 aa17.34■□□□□ 0.37
CTSA-213ENST00000606782 DUSP27Q5VZP5 1158 aa17.34■□□□□ 0.37
CTSA-213ENST00000606782 PLBD2Q8NHP8 589 aa17.34■□□□□ 0.37
CTSA-213ENST00000606782 GNAI1P63096 354 aa17.33■□□□□ 0.36
CTSA-213ENST00000606782 ANKRD13DQ6ZTN6 518 aa17.33■□□□□ 0.36
CTSA-213ENST00000606782 HYPKQ9NX55 129 aa17.33■□□□□ 0.36
CTSA-213ENST00000606782 ISCA1Q9BUE6 129 aa17.32■□□□□ 0.36
CTSA-213ENST00000606782 SCN4AP35499 1836 aa17.31■□□□□ 0.36
CTSA-213ENST00000606782 SH3TC1Q8TE82 1336 aa17.31■□□□□ 0.36
CTSA-213ENST00000606782 ZNF541Q9H0D2 1346 aa17.31■□□□□ 0.36
CTSA-213ENST00000606782 IQCA1LA6NCM1 817 aa17.31■□□□□ 0.36
CTSA-213ENST00000606782 TRIM28Q13263 835 aaKnown RBP17.31■□□□□ 0.36
CTSA-213ENST00000606782 KLRG1Q96E93 195 aa17.31■□□□□ 0.36
CTSA-213ENST00000606782 TRMT112Q9UI30 125 aaKnown RBP17.31■□□□□ 0.36
CTSA-213ENST00000606782 PPEF1O14829 653 aaPredicted RBP17.3■□□□□ 0.36
CTSA-213ENST00000606782 BBOX1O75936 387 aa17.3■□□□□ 0.36
CTSA-213ENST00000606782 NCBP3Q53F19 620 aaKnown RBP17.3■□□□□ 0.36
CTSA-213ENST00000606782 JMYQ8N9B5 988 aa17.3■□□□□ 0.36
CTSA-213ENST00000606782 VPS33BQ9H267 617 aa17.3■□□□□ 0.36
CTSA-213ENST00000606782 ATP6V0A2Q9Y487 856 aa17.3■□□□□ 0.36
CTSA-213ENST00000606782 HCLS1P14317 486 aaPredicted RBP17.29■□□□□ 0.36
CTSA-213ENST00000606782 HTRA3P83110 453 aa17.29■□□□□ 0.36
CTSA-213ENST00000606782 CCDC27Q2M243 656 aa17.29■□□□□ 0.36
CTSA-213ENST00000606782 CHADLQ6NUI6 762 aa17.29■□□□□ 0.36
CTSA-213ENST00000606782 JDP2Q8WYK2 163 aa17.29■□□□□ 0.36
CTSA-213ENST00000606782 TAF1DQ9H5J8 278 aaPredicted RBP17.29■□□□□ 0.36
CTSA-213ENST00000606782 ABCC4O15439 1325 aa17.28■□□□□ 0.36
CTSA-213ENST00000606782 SP8Q8IXZ3 490 aa17.28■□□□□ 0.36
CTSA-213ENST00000606782 FAM9BQ8IZU0 186 aa17.28■□□□□ 0.36
CTSA-213ENST00000606782 GPC2Q8N158 579 aa17.28■□□□□ 0.36
CTSA-213ENST00000606782 RTFDC1Q9BY42 306 aaPredicted RBP17.28■□□□□ 0.36
CTSA-213ENST00000606782 CHMP4AQ9BY43 222 aa17.28■□□□□ 0.36
CTSA-213ENST00000606782 COL4A5P29400 1685 aa17.28■□□□□ 0.36
CTSA-213ENST00000606782 POTEIP0CG38 1075 aa17.27■□□□□ 0.36
CTSA-213ENST00000606782 POTEJP0CG39 1038 aa17.27■□□□□ 0.36
CTSA-213ENST00000606782 SLC51AQ86UW1 340 aa17.27■□□□□ 0.36
CTSA-213ENST00000606782 LDHDQ86WU2 507 aa17.27■□□□□ 0.36
CTSA-213ENST00000606782 LAMB2P55268 1798 aa17.27■□□□□ 0.35
CTSA-213ENST00000606782 SF3B3Q15393 1217 aaKnown RBP17.26■□□□□ 0.35
CTSA-213ENST00000606782 DDX46Q7L014 1031 aaKnown RBP17.26■□□□□ 0.35
CTSA-213ENST00000606782 C8orf58Q8NAV2 365 aa17.26■□□□□ 0.35
CTSA-213ENST00000606782 HACL1Q9UJ83 578 aa17.26■□□□□ 0.35
CTSA-213ENST00000606782 GRAPQ13588 217 aa17.25■□□□□ 0.35
CTSA-213ENST00000606782 TMC4Q7Z404 712 aa17.25■□□□□ 0.35
CTSA-213ENST00000606782 LARGE2Q8N3Y3 721 aa17.25■□□□□ 0.35
CTSA-213ENST00000606782 GRAPLQ8TC17 118 aaPredicted RBP17.25■□□□□ 0.35
CTSA-213ENST00000606782 TMX4Q9H1E5 349 aaPredicted RBP17.25■□□□□ 0.35
CTSA-213ENST00000606782 ATP5J2-PTCD1G3V325 749 aa17.24■□□□□ 0.35
CTSA-213ENST00000606782 ELL2O00472 640 aaPredicted RBP17.24■□□□□ 0.35
CTSA-213ENST00000606782 TCERG1O14776 1098 aaKnown RBP17.24■□□□□ 0.35
CTSA-213ENST00000606782 EPHX2P34913 555 aa17.24■□□□□ 0.35
CTSA-213ENST00000606782 EIF6P56537 245 aaKnown RBP17.24■□□□□ 0.35
CTSA-213ENST00000606782 PNMA8AQ86V59 439 aaPredicted RBP17.24■□□□□ 0.35
CTSA-213ENST00000606782 WWC1Q8IX03 1113 aa17.24■□□□□ 0.35
CTSA-213ENST00000606782 SUPT20HQ8NEM7 779 aa17.24■□□□□ 0.35
CTSA-213ENST00000606782 FAM89AQ96GI7 184 aa17.24■□□□□ 0.35
CTSA-213ENST00000606782 PHAXQ9H814 394 aaKnown RBP17.24■□□□□ 0.35
CTSA-213ENST00000606782 PASKQ96RG2 1323 aa17.23■□□□□ 0.35
CTSA-213ENST00000606782 ADAMTSL1Q8N6G6 1762 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms