RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SLC4A2P04920 1241 aa21.64■■□□□ 1.05
TRIM28-215ENST00000601150 SRGNP10124 158 aa21.64■■□□□ 1.05
TRIM28-215ENST00000601150 STYK1Q6J9G0 422 aa21.64■■□□□ 1.05
TRIM28-215ENST00000601150 GOLGB1Q14789 3259 aaKnown RBP21.63■■□□□ 1.05
TRIM28-215ENST00000601150 KLRG2A4D1S0 409 aaPredicted RBP21.63■■□□□ 1.05
TRIM28-215ENST00000601150 SLFN5Q08AF3 891 aa21.63■■□□□ 1.05
TRIM28-215ENST00000601150 MASTLQ96GX5 879 aa21.63■■□□□ 1.05
TRIM28-215ENST00000601150 ISCA1Q9BUE6 129 aa21.63■■□□□ 1.05
TRIM28-215ENST00000601150 ARHGAP27Q6ZUM4 889 aa21.62■■□□□ 1.05
TRIM28-215ENST00000601150 SLX4Q8IY92 1834 aa21.62■■□□□ 1.05
TRIM28-215ENST00000601150 NPR1P16066 1061 aa21.61■■□□□ 1.05
TRIM28-215ENST00000601150 CNKSR1Q969H4 720 aa21.61■■□□□ 1.05
TRIM28-215ENST00000601150 LAMB2P55268 1798 aa21.61■■□□□ 1.05
TRIM28-215ENST00000601150 ATP5J2-PTCD1G3V325 749 aa21.6■■□□□ 1.05
TRIM28-215ENST00000601150 TRIM28Q13263 835 aaKnown RBP21.6■■□□□ 1.05
TRIM28-215ENST00000601150 G2E3Q7L622 706 aa21.6■■□□□ 1.05
TRIM28-215ENST00000601150 TRMT112Q9UI30 125 aaKnown RBP21.6■■□□□ 1.05
TRIM28-215ENST00000601150 SLC10A5Q5PT55 438 aa21.59■■□□□ 1.05
TRIM28-215ENST00000601150 KSR2Q6VAB6 950 aa21.59■■□□□ 1.05
TRIM28-215ENST00000601150 SH3TC1Q8TE82 1336 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 DDX60Q8IY21 1712 aaKnown RBP21.58■■□□□ 1.05
TRIM28-215ENST00000601150 PI4KAP2A4QPH2 592 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 FLIIQ13045 1269 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 CRY2Q49AN0 593 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 PI4KAP1Q8N8J0 262 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 CDCA7LQ96GN5 454 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 MYD88Q99836 296 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 METTL22Q9BUU2 404 aaPredicted RBP21.58■■□□□ 1.05
TRIM28-215ENST00000601150 MAP3K2Q9Y2U5 619 aa21.58■■□□□ 1.05
TRIM28-215ENST00000601150 PRPF40BQ6NWY9 871 aaKnown RBP21.57■■□□□ 1.04
TRIM28-215ENST00000601150 NLRP3Q96P20 1036 aa21.57■■□□□ 1.04
TRIM28-215ENST00000601150 SBF1O95248 1867 aa21.57■■□□□ 1.04
TRIM28-215ENST00000601150 UTRNP46939 3433 aa21.57■■□□□ 1.04
TRIM28-215ENST00000601150 ADCY9O60503 1353 aa21.57■■□□□ 1.04
TRIM28-215ENST00000601150 TRMT2AQ8IZ69 625 aaKnown RBP21.56■■□□□ 1.04
TRIM28-215ENST00000601150 RPGRQ92834 1020 aaKnown RBP21.56■■□□□ 1.04
TRIM28-215ENST00000601150 FER1L6Q2WGJ9 1857 aa21.56■■□□□ 1.04
TRIM28-215ENST00000601150 ALDH1B1P30837 517 aa21.55■■□□□ 1.04
TRIM28-215ENST00000601150 FKBP5Q13451 457 aaPredicted RBP21.55■■□□□ 1.04
TRIM28-215ENST00000601150 SYNE4Q8N205 404 aa21.55■■□□□ 1.04
TRIM28-215ENST00000601150 CCDC191Q8NCU4 936 aa21.55■■□□□ 1.04
TRIM28-215ENST00000601150 ZNF428Q96B54 188 aa21.55■■□□□ 1.04
TRIM28-215ENST00000601150 CCDC88AQ3V6T2 1871 aa21.55■■□□□ 1.04
TRIM28-215ENST00000601150 C21orf2O43822 256 aa21.54■■□□□ 1.04
TRIM28-215ENST00000601150 HCLS1P14317 486 aaPredicted RBP21.54■■□□□ 1.04
TRIM28-215ENST00000601150 HOXA10P31260 410 aaPredicted RBP21.54■■□□□ 1.04
TRIM28-215ENST00000601150 NEXNQ0ZGT2 675 aa21.54■■□□□ 1.04
TRIM28-215ENST00000601150 FAM89AQ96GI7 184 aa21.54■■□□□ 1.04
TRIM28-215ENST00000601150 ZNF219Q9P2Y4 722 aaPredicted RBP21.54■■□□□ 1.04
TRIM28-215ENST00000601150 HNRNPUQ00839 825 aaKnown RBP eCLIP21.53■■□□□ 1.04
TRIM28-215ENST00000601150 C3orf67Q6ZVT6 689 aa21.53■■□□□ 1.04
TRIM28-215ENST00000601150 CWC25Q9NXE8 425 aaPredicted RBP21.53■■□□□ 1.04
TRIM28-215ENST00000601150 SOGA3Q5TF21 947 aa21.52■■□□□ 1.04
TRIM28-215ENST00000601150 RBM17Q96I25 401 aaKnown RBP21.52■■□□□ 1.04
TRIM28-215ENST00000601150 ZBTB38Q8NAP3 1195 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-215ENST00000601150 CRAMP1Q96RY5 1269 aa21.51■■□□□ 1.03
TRIM28-215ENST00000601150 PCCAP05165 728 aaPredicted RBP21.5■■□□□ 1.03
TRIM28-215ENST00000601150 IGKV5-2P06315 115 aa21.5■■□□□ 1.03
TRIM28-215ENST00000601150 RTL5Q5HYW3 569 aaPredicted RBP21.5■■□□□ 1.03
TRIM28-215ENST00000601150 C7orf43Q8WVR3 580 aa21.5■■□□□ 1.03
TRIM28-215ENST00000601150 DNAAF4Q8WXU2 420 aa21.5■■□□□ 1.03
TRIM28-215ENST00000601150 NFKBIEO00221 500 aa21.49■■□□□ 1.03
TRIM28-215ENST00000601150 IRS4O14654 1257 aaPredicted RBP21.49■■□□□ 1.03
TRIM28-215ENST00000601150 HSP90B1P14625 803 aaKnown RBP21.49■■□□□ 1.03
TRIM28-215ENST00000601150 RASSF7Q02833 373 aa21.49■■□□□ 1.03
TRIM28-215ENST00000601150 ZNF784Q8NCA9 323 aaPredicted RBP21.49■■□□□ 1.03
TRIM28-215ENST00000601150 TAF1P21675 1872 aa21.48■■□□□ 1.03
TRIM28-215ENST00000601150 NEURL1BA8MQ27 555 aa21.48■■□□□ 1.03
TRIM28-215ENST00000601150 CCDC93Q567U6 631 aa21.48■■□□□ 1.03
TRIM28-215ENST00000601150 C9orf131Q5VYM1 1079 aa21.48■■□□□ 1.03
TRIM28-215ENST00000601150 DICER1Q9UPY3 1922 aaKnown RBP21.48■■□□□ 1.03
TRIM28-215ENST00000601150 MYH3P11055 1940 aa21.47■■□□□ 1.03
TRIM28-215ENST00000601150 CT47B1P0C2W7 299 aaPredicted RBP21.47■■□□□ 1.03
TRIM28-215ENST00000601150 CWF19L2Q2TBE0 894 aaKnown RBP21.47■■□□□ 1.03
TRIM28-215ENST00000601150 MRPL50Q8N5N7 158 aaKnown RBP21.47■■□□□ 1.03
TRIM28-215ENST00000601150 RNF181Q9P0P0 153 aa21.47■■□□□ 1.03
TRIM28-215ENST00000601150 LTBP3Q9NS15 1303 aa21.47■■□□□ 1.03
TRIM28-215ENST00000601150 TIAM2Q8IVF5 1701 aa21.46■■□□□ 1.03
TRIM28-215ENST00000601150 LMNB1P20700 586 aa21.46■■□□□ 1.03
TRIM28-215ENST00000601150 ALDH1L2Q3SY69 923 aa21.46■■□□□ 1.03
TRIM28-215ENST00000601150 DDX46Q7L014 1031 aaKnown RBP21.46■■□□□ 1.03
TRIM28-215ENST00000601150 LINS1Q8NG48 757 aa21.46■■□□□ 1.03
TRIM28-215ENST00000601150 SSH1Q8WYL5 1049 aa21.46■■□□□ 1.03
TRIM28-215ENST00000601150 ABCC4O15439 1325 aa21.46■■□□□ 1.03
TRIM28-215ENST00000601150 F6X3S4 739 aa21.45■■□□□ 1.02
TRIM28-215ENST00000601150 PPEF1O14829 653 aaPredicted RBP21.45■■□□□ 1.02
TRIM28-215ENST00000601150 SF3B3Q15393 1217 aaKnown RBP21.45■■□□□ 1.02
TRIM28-215ENST00000601150 RTKN2Q8IZC4 609 aa21.45■■□□□ 1.02
TRIM28-215ENST00000601150 TAOK3Q9H2K8 898 aa21.45■■□□□ 1.02
TRIM28-215ENST00000601150 CDHR2Q9BYE9 1310 aa21.45■■□□□ 1.02
TRIM28-215ENST00000601150 CC2D2BQ6DHV5 1058 aa21.44■■□□□ 1.02
TRIM28-215ENST00000601150 OLFM4Q6UX06 510 aa21.44■■□□□ 1.02
TRIM28-215ENST00000601150 JARID2Q92833 1246 aaPredicted RBP21.44■■□□□ 1.02
TRIM28-215ENST00000601150 PDE8AO60658 829 aa21.43■■□□□ 1.02
TRIM28-215ENST00000601150 PRELPP51888 382 aa21.43■■□□□ 1.02
TRIM28-215ENST00000601150 GCKRQ14397 625 aa21.43■■□□□ 1.02
TRIM28-215ENST00000601150 H7C1W4 665 aa21.42■■□□□ 1.02
TRIM28-215ENST00000601150 BBOX1O75936 387 aa21.42■■□□□ 1.02
TRIM28-215ENST00000601150 PTPRCP08575 1304 aa21.42■■□□□ 1.02
TRIM28-215ENST00000601150 GRAPQ13588 217 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms