RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 NCOA7Q8NI08 942 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 MAP3K2Q9Y2U5 619 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 PRPF40BQ6NWY9 871 aaKnown RBP23.61■■□□□ 1.37
UPF1-207ENST00000599848 WDR7Q9Y4E6 1490 aa23.61■■□□□ 1.37
UPF1-207ENST00000599848 ACTN2P35609 894 aa23.6■■□□□ 1.37
UPF1-207ENST00000599848 TMEM67Q5HYA8 995 aa23.6■■□□□ 1.37
UPF1-207ENST00000599848 BICD1Q96G01 975 aa23.6■■□□□ 1.37
UPF1-207ENST00000599848 TSPY3P0CV98 308 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 TSPY8P0CW00 308 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 UBA7P41226 1012 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 TMEM57Q8N5G2 664 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 SCAF11Q99590 1463 aaKnown RBP23.59■■□□□ 1.37
UPF1-207ENST00000599848 ZSCAN12O43309 604 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 GRM1Q13255 1194 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 CCDC117Q8IWD4 279 aaPredicted RBP23.59■■□□□ 1.37
UPF1-207ENST00000599848 ESR2Q92731 530 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 CFAP100Q494V2 611 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 RBM17Q96I25 401 aaKnown RBP23.59■■□□□ 1.37
UPF1-207ENST00000599848 MIS18AQ9NYP9 233 aa23.59■■□□□ 1.37
UPF1-207ENST00000599848 PLVAPQ9BX97 442 aa23.58■■□□□ 1.37
UPF1-207ENST00000599848 BIN2Q9UBW5 565 aaPredicted RBP23.58■■□□□ 1.37
UPF1-207ENST00000599848 ALDH1L1O75891 902 aa23.58■■□□□ 1.37
UPF1-207ENST00000599848 SUPT20HQ8NEM7 779 aa23.58■■□□□ 1.36
UPF1-207ENST00000599848 DDX11Q96FC9 970 aa23.58■■□□□ 1.36
UPF1-207ENST00000599848 TSNARE1Q96NA8 513 aa23.58■■□□□ 1.36
UPF1-207ENST00000599848 EMILIN1Q9Y6C2 1016 aa23.58■■□□□ 1.36
UPF1-207ENST00000599848 SLFN5Q08AF3 891 aa23.57■■□□□ 1.36
UPF1-207ENST00000599848 IL16Q14005 1332 aa23.57■■□□□ 1.36
UPF1-207ENST00000599848 LIG1P18858 919 aa23.57■■□□□ 1.36
UPF1-207ENST00000599848 GNAT2P19087 354 aa23.57■■□□□ 1.36
UPF1-207ENST00000599848 CHRNA2Q15822 529 aa23.57■■□□□ 1.36
UPF1-207ENST00000599848 CCDC40Q4G0X9 1142 aa23.57■■□□□ 1.36
UPF1-207ENST00000599848 AKAP4Q5JQC9 854 aa23.57■■□□□ 1.36
UPF1-207ENST00000599848 CDK13Q14004 1512 aaKnown RBP23.57■■□□□ 1.36
UPF1-207ENST00000599848 NAP1L4Q99733 375 aaKnown RBP23.57■■□□□ 1.36
UPF1-207ENST00000599848 NIP7Q9Y221 180 aaKnown RBP eCLIP23.57■■□□□ 1.36
UPF1-207ENST00000599848 GOLGA6L10A0A0M3HER8 536 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 IMPG2Q9BZV3 1241 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 C6orf50Q9HD87 102 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 GSTTP1A0A1W2PQM5 241 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 UBE3BQ7Z3V4 1068 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 CERS3Q8IU89 383 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 RMND1Q9NWS8 449 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 YEATS4O95619 227 aa23.56■■□□□ 1.36
UPF1-207ENST00000599848 CCDC8Q9H0W5 538 aaPredicted RBP23.56■■□□□ 1.36
UPF1-207ENST00000599848 MAST3O60307 1309 aa23.55■■□□□ 1.36
UPF1-207ENST00000599848 CALM1P0DP23 149 aa23.55■■□□□ 1.36
UPF1-207ENST00000599848 CALM2P0DP24 149 aa23.55■■□□□ 1.36
UPF1-207ENST00000599848 CALM3P0DP25 149 aa23.55■■□□□ 1.36
UPF1-207ENST00000599848 BAG6P46379 1132 aa23.55■■□□□ 1.36
UPF1-207ENST00000599848 IFI16Q16666 785 aaKnown RBP23.55■■□□□ 1.36
UPF1-207ENST00000599848 NAA16Q6N069 864 aaPredicted RBP23.55■■□□□ 1.36
UPF1-207ENST00000599848 NOS1P29475 1434 aa23.54■■□□□ 1.36
UPF1-207ENST00000599848 GCOM1H8Y6P7 765 aaPredicted RBP23.54■■□□□ 1.36
UPF1-207ENST00000599848 MYZAPP0CAP1 466 aa23.54■■□□□ 1.36
UPF1-207ENST00000599848 IL15P40933 162 aaPredicted RBP23.54■■□□□ 1.36
UPF1-207ENST00000599848 ATP2B3Q16720 1220 aa23.54■■□□□ 1.36
UPF1-207ENST00000599848 SMARCC2Q8TAQ2 1214 aa23.54■■□□□ 1.36
UPF1-207ENST00000599848 INCENPQ9NQS7 918 aa23.54■■□□□ 1.36
UPF1-207ENST00000599848 TRAPPC3LQ5T215 181 aa23.53■■□□□ 1.36
UPF1-207ENST00000599848 PAFAH1B1P43034 410 aa23.53■■□□□ 1.36
UPF1-207ENST00000599848 MSANTD4Q8NCY6 345 aa23.53■■□□□ 1.36
UPF1-207ENST00000599848 KRT13P13646 458 aa23.53■■□□□ 1.36
UPF1-207ENST00000599848 TAF12Q16514 161 aa23.53■■□□□ 1.36
UPF1-207ENST00000599848 MAP9Q49MG5 647 aa23.53■■□□□ 1.36
UPF1-207ENST00000599848 VEZTQ9HBM0 779 aa23.53■■□□□ 1.36
UPF1-207ENST00000599848 GOLIM4O00461 696 aa23.52■■□□□ 1.36
UPF1-207ENST00000599848 TTC12Q9H892 705 aaPredicted RBP23.52■■□□□ 1.36
UPF1-207ENST00000599848 CYP7A1P22680 504 aa23.52■■□□□ 1.36
UPF1-207ENST00000599848 EIF6P56537 245 aaKnown RBP23.52■■□□□ 1.36
UPF1-207ENST00000599848 STX8Q9UNK0 236 aa23.52■■□□□ 1.36
UPF1-207ENST00000599848 CCDC66A2RUB6 948 aa23.52■■□□□ 1.36
UPF1-207ENST00000599848 MTIF2P46199 727 aaKnown RBP23.52■■□□□ 1.36
UPF1-207ENST00000599848 WTAPQ15007 396 aa23.52■■□□□ 1.35
UPF1-207ENST00000599848 CNNM3Q8NE01 707 aa23.52■■□□□ 1.35
UPF1-207ENST00000599848 NAA15Q9BXJ9 866 aaKnown RBP23.52■■□□□ 1.35
UPF1-207ENST00000599848 IDEP14735 1019 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 METAP2P50579 478 aaKnown RBP eCLIP23.51■■□□□ 1.352e-6■■■■□ 22.1
UPF1-207ENST00000599848 CCDC82Q8N4S0 544 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 MCM5P33992 734 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 LIMCH1Q9UPQ0 1083 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 PCDH11XQ9BZA7 1347 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 PCDH11YQ9BZA8 1340 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 ABCC5O15440 1437 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 TCERG1LQ5VWI1 586 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 ALS2CR12Q96Q35 445 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 DZIP3Q86Y13 1208 aaKnown RBP23.51■■□□□ 1.35
UPF1-207ENST00000599848 VAT1LQ9HCJ6 419 aa23.51■■□□□ 1.35
UPF1-207ENST00000599848 KDM5BQ9UGL1 1544 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 SREK1Q8WXA9 508 aaKnown RBP23.5■■□□□ 1.35
UPF1-207ENST00000599848 TBC1D5Q92609 795 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 PRC1O43663 620 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 TTC6Q86TZ1 520 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 SFPQP23246 707 aaKnown RBP eCLIP23.5■■□□□ 1.35
UPF1-207ENST00000599848 LUZP1Q86V48 1076 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 ACSBG1Q96GR2 724 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 KIF5CO60282 957 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 TDRD12Q587J7 1177 aaKnown RBP23.5■■□□□ 1.35
UPF1-207ENST00000599848 CENPHQ9H3R5 247 aa23.5■■□□□ 1.35
UPF1-207ENST00000599848 USP16Q9Y5T5 823 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms