RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 ARFGEF2Q9Y6D5 1785 aa18.22■□□□□ 0.51
LIG1-218ENST00000599322 IBTKQ9P2D0 1353 aaPredicted RBP18.22■□□□□ 0.51
LIG1-218ENST00000599322 C21orf2O43822 256 aa18.22■□□□□ 0.51
LIG1-218ENST00000599322 DDX58O95786 925 aaKnown RBP18.22■□□□□ 0.51
LIG1-218ENST00000599322 TCIRG1Q13488 830 aa18.22■□□□□ 0.51
LIG1-218ENST00000599322 SUSD4Q5VX71 490 aa18.22■□□□□ 0.51
LIG1-218ENST00000599322 PLBD2Q8NHP8 589 aa18.22■□□□□ 0.51
LIG1-218ENST00000599322 RBM46Q8TBY0 533 aaKnown RBP18.22■□□□□ 0.51
LIG1-218ENST00000599322 RNF123Q5XPI4 1314 aa18.22■□□□□ 0.51
LIG1-218ENST00000599322 LMNB1P20700 586 aa18.21■□□□□ 0.51
LIG1-218ENST00000599322 ERFEQ4G0M1 354 aa18.21■□□□□ 0.51
LIG1-218ENST00000599322 RIC3Q7Z5B4 369 aa18.21■□□□□ 0.51
LIG1-218ENST00000599322 NUTM1Q86Y26 1132 aa18.21■□□□□ 0.51
LIG1-218ENST00000599322 DNAJC5GQ8N7S2 189 aa18.21■□□□□ 0.51
LIG1-218ENST00000599322 NLRP3Q96P20 1036 aa18.21■□□□□ 0.51
LIG1-218ENST00000599322 KDM2BQ8NHM5 1336 aa18.21■□□□□ 0.51
LIG1-218ENST00000599322 KLRG2A4D1S0 409 aaPredicted RBP18.2■□□□□ 0.5
LIG1-218ENST00000599322 PRPF40BQ6NWY9 871 aaKnown RBP18.2■□□□□ 0.5
LIG1-218ENST00000599322 LRP10Q7Z4F1 713 aa18.2■□□□□ 0.5
LIG1-218ENST00000599322 RRAGCQ9HB90 399 aa18.2■□□□□ 0.5
LIG1-218ENST00000599322 TRMT112Q9UI30 125 aaKnown RBP18.2■□□□□ 0.5
LIG1-218ENST00000599322 SLX4Q8IY92 1834 aa18.19■□□□□ 0.5
LIG1-218ENST00000599322 C8orf58Q8NAV2 365 aa18.19■□□□□ 0.5
LIG1-218ENST00000599322 TSR2Q969E8 191 aaKnown RBP18.19■□□□□ 0.5
LIG1-218ENST00000599322 RBM17Q96I25 401 aaKnown RBP18.19■□□□□ 0.5
LIG1-218ENST00000599322 NUP98P52948 1817 aa18.19■□□□□ 0.5
LIG1-218ENST00000599322 HSP90B1P14625 803 aaKnown RBP18.18■□□□□ 0.5
LIG1-218ENST00000599322 TWISTNBQ3B726 338 aaPredicted RBP18.18■□□□□ 0.5
LIG1-218ENST00000599322 CCDC93Q567U6 631 aa18.18■□□□□ 0.5
LIG1-218ENST00000599322 MYH16Q9H6N6 1097 aa18.18■□□□□ 0.5
LIG1-218ENST00000599322 UBN2Q6ZU65 1347 aa18.18■□□□□ 0.5
LIG1-218ENST00000599322 NTSR2O95665 410 aa18.17■□□□□ 0.5
LIG1-218ENST00000599322 NLRP10Q86W26 655 aa18.17■□□□□ 0.5
LIG1-218ENST00000599322 C16orf71Q8IYS4 520 aaPredicted RBP18.17■□□□□ 0.5
LIG1-218ENST00000599322 TAOK3Q9H2K8 898 aa18.17■□□□□ 0.5
LIG1-218ENST00000599322 SH3TC1Q8TE82 1336 aa18.17■□□□□ 0.5
LIG1-218ENST00000599322 ZC3H4Q9UPT8 1303 aaKnown RBP18.17■□□□□ 0.5
LIG1-218ENST00000599322 NFKBIEO00221 500 aa18.16■□□□□ 0.5
LIG1-218ENST00000599322 HTRA3P83110 453 aa18.16■□□□□ 0.5
LIG1-218ENST00000599322 CC2D2BQ6DHV5 1058 aa18.16■□□□□ 0.5
LIG1-218ENST00000599322 RTKN2Q8IZC4 609 aa18.16■□□□□ 0.5
LIG1-218ENST00000599322 FSTL1Q12841 308 aa18.15■□□□□ 0.5
LIG1-218ENST00000599322 GRIPAP1Q4V328 841 aa18.15■□□□□ 0.5
LIG1-218ENST00000599322 SLC10A5Q5PT55 438 aa18.15■□□□□ 0.5
LIG1-218ENST00000599322 DPY19L2Q6NUT2 758 aa18.15■□□□□ 0.5
LIG1-218ENST00000599322 RIC1Q4ADV7 1423 aa18.15■□□□□ 0.5
LIG1-218ENST00000599322 NEXNQ0ZGT2 675 aa18.14■□□□□ 0.49
LIG1-218ENST00000599322 CRY2Q49AN0 593 aa18.14■□□□□ 0.49
LIG1-218ENST00000599322 ATP5J2-PTCD1G3V325 749 aa18.13■□□□□ 0.49
LIG1-218ENST00000599322 CCER2I3L3R5 266 aa18.13■□□□□ 0.49
LIG1-218ENST00000599322 HOXA10P31260 410 aaPredicted RBP18.13■□□□□ 0.49
LIG1-218ENST00000599322 TSPYL6Q8N831 410 aa18.13■□□□□ 0.49
LIG1-218ENST00000599322 CRAMP1Q96RY5 1269 aa18.13■□□□□ 0.49
LIG1-218ENST00000599322 PHAXQ9H814 394 aaKnown RBP18.13■□□□□ 0.49
LIG1-218ENST00000599322 LTBP3Q9NS15 1303 aa18.13■□□□□ 0.49
LIG1-218ENST00000599322 ABCC12Q96J65 1359 aa18.13■□□□□ 0.49
LIG1-218ENST00000599322 GLTPD2A6NH11 291 aa18.12■□□□□ 0.49
LIG1-218ENST00000599322 TRIM28Q13263 835 aaKnown RBP18.12■□□□□ 0.49
LIG1-218ENST00000599322 DDX46Q7L014 1031 aaKnown RBP18.12■□□□□ 0.49
LIG1-218ENST00000599322 ISCA1Q9BUE6 129 aa18.12■□□□□ 0.49
LIG1-218ENST00000599322 FANCIQ9NVI1 1328 aa18.12■□□□□ 0.49
LIG1-218ENST00000599322 SLC4A2P04920 1241 aa18.11■□□□□ 0.49
LIG1-218ENST00000599322 FKBP4Q02790 459 aaKnown RBP eCLIP18.11■□□□□ 0.49
LIG1-218ENST00000599322 MYD88Q99836 296 aa18.11■□□□□ 0.49
LIG1-218ENST00000599322 PPEF1O14829 653 aaPredicted RBP18.1■□□□□ 0.49
LIG1-218ENST00000599322 HCLS1P14317 486 aaPredicted RBP18.1■□□□□ 0.49
LIG1-218ENST00000599322 TCERG1O14776 1098 aaKnown RBP18.09■□□□□ 0.49
LIG1-218ENST00000599322 BBOX1O75936 387 aa18.09■□□□□ 0.49
LIG1-218ENST00000599322 EXOSC9Q06265 439 aaKnown RBP18.09■□□□□ 0.49
LIG1-218ENST00000599322 KSR2Q6VAB6 950 aa18.09■□□□□ 0.49
LIG1-218ENST00000599322 CCDC191Q8NCU4 936 aa18.09■□□□□ 0.49
LIG1-218ENST00000599322 SMC1BQ8NDV3 1235 aa18.09■□□□□ 0.49
LIG1-218ENST00000599322 C7orf43Q8WVR3 580 aa18.09■□□□□ 0.49
LIG1-218ENST00000599322 KLRG1Q96E93 195 aa18.09■□□□□ 0.49
LIG1-218ENST00000599322 CWC25Q9NXE8 425 aaPredicted RBP18.09■□□□□ 0.49
LIG1-218ENST00000599322 POTECB2RU33 542 aa18.08■□□□□ 0.48
LIG1-218ENST00000599322 VEGFAP15692 232 aaPredicted RBP18.08■□□□□ 0.48
LIG1-218ENST00000599322 FAM89AQ96GI7 184 aa18.08■□□□□ 0.48
LIG1-218ENST00000599322 METTL22Q9BUU2 404 aaPredicted RBP18.08■□□□□ 0.48
LIG1-218ENST00000599322 MAP3K2Q9Y2U5 619 aa18.08■□□□□ 0.48
LIG1-218ENST00000599322 IRS4O14654 1257 aaPredicted RBP18.07■□□□□ 0.48
LIG1-218ENST00000599322 TMC4Q7Z404 712 aa18.07■□□□□ 0.48
LIG1-218ENST00000599322 SYNE4Q8N205 404 aa18.07■□□□□ 0.48
LIG1-218ENST00000599322 ZBTB38Q8NAP3 1195 aaPredicted RBP18.07■□□□□ 0.48
LIG1-218ENST00000599322 JDP2Q8WYK2 163 aa18.07■□□□□ 0.48
LIG1-218ENST00000599322 ANKRD36CQ5JPF3 1778 aa18.07■□□□□ 0.48
LIG1-218ENST00000599322 PCNTO95613 3336 aa18.06■□□□□ 0.48
LIG1-218ENST00000599322 PI4KAP2A4QPH2 592 aa18.06■□□□□ 0.48
LIG1-218ENST00000599322 FKBP5Q13451 457 aaPredicted RBP18.06■□□□□ 0.48
LIG1-218ENST00000599322 RTL5Q5HYW3 569 aaPredicted RBP18.06■□□□□ 0.48
LIG1-218ENST00000599322 PI4KAP1Q8N8J0 262 aa18.06■□□□□ 0.48
LIG1-218ENST00000599322 JMYQ8N9B5 988 aa18.06■□□□□ 0.48
LIG1-218ENST00000599322 SUPT20HQ8NEM7 779 aa18.06■□□□□ 0.48
LIG1-218ENST00000599322 VAMP4O75379 141 aa18.05■□□□□ 0.48
LIG1-218ENST00000599322 ZNF428Q96B54 188 aa18.05■□□□□ 0.48
LIG1-218ENST00000599322 PSMD1Q99460 953 aa18.05■□□□□ 0.48
LIG1-218ENST00000599322 E9PSI1 815 aa18.04■□□□□ 0.48
LIG1-218ENST00000599322 PCCAP05165 728 aaPredicted RBP18.04■□□□□ 0.48
LIG1-218ENST00000599322 IARSP41252 1262 aaKnown RBP18.04■□□□□ 0.48
LIG1-218ENST00000599322 FLIIQ13045 1269 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms