RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 TOMM70O94826 608 aa13.93□□□□□ -0.18
VRK3-214ENST00000598553 HDGFL1Q5TGJ6 251 aa13.93□□□□□ -0.18
VRK3-214ENST00000598553 DDX21Q9NR30 783 aaKnown RBP eCLIP13.93□□□□□ -0.18
VRK3-214ENST00000598553 LRRC37AA6NMS7 1700 aa13.93□□□□□ -0.18
VRK3-214ENST00000598553 ZNF541Q9H0D2 1346 aa13.92□□□□□ -0.18
VRK3-214ENST00000598553 GLTPD2A6NH11 291 aa13.92□□□□□ -0.18
VRK3-214ENST00000598553 GTF2E1P29083 439 aaPredicted RBP13.92□□□□□ -0.18
VRK3-214ENST00000598553 NLRP10Q86W26 655 aa13.92□□□□□ -0.18
VRK3-214ENST00000598553 TSPYL6Q8N831 410 aa13.92□□□□□ -0.18
VRK3-214ENST00000598553 C8orf58Q8NAV2 365 aa13.92□□□□□ -0.18
VRK3-214ENST00000598553 ZNF277Q9NRM2 450 aaPredicted RBP13.92□□□□□ -0.18
VRK3-214ENST00000598553 KDM2BQ8NHM5 1336 aa13.91□□□□□ -0.18
VRK3-214ENST00000598553 TCERG1O14776 1098 aaKnown RBP13.91□□□□□ -0.18
VRK3-214ENST00000598553 DDNO94850 711 aaPredicted RBP13.91□□□□□ -0.18
VRK3-214ENST00000598553 POTEIP0CG38 1075 aa13.91□□□□□ -0.18
VRK3-214ENST00000598553 POTEJP0CG39 1038 aa13.91□□□□□ -0.18
VRK3-214ENST00000598553 CCDC93Q567U6 631 aa13.91□□□□□ -0.18
VRK3-214ENST00000598553 DUOX1Q9NRD9 1551 aa13.91□□□□□ -0.18
VRK3-214ENST00000598553 ADAMTSL1Q8N6G6 1762 aa13.91□□□□□ -0.18
VRK3-214ENST00000598553 ZC3H4Q9UPT8 1303 aaKnown RBP13.9□□□□□ -0.18
VRK3-214ENST00000598553 SCN4AP35499 1836 aa13.9□□□□□ -0.18
VRK3-214ENST00000598553 SPEF2Q9C093 1822 aa13.9□□□□□ -0.18
VRK3-214ENST00000598553 HCLS1P14317 486 aaPredicted RBP13.9□□□□□ -0.18
VRK3-214ENST00000598553 ZEB1P37275 1124 aaPredicted RBP13.9□□□□□ -0.18
VRK3-214ENST00000598553 TSR2Q969E8 191 aaKnown RBP13.9□□□□□ -0.18
VRK3-214ENST00000598553 NYXQ9GZU5 481 aa13.9□□□□□ -0.18
VRK3-214ENST00000598553 PHAXQ9H814 394 aaKnown RBP13.9□□□□□ -0.18
VRK3-214ENST00000598553 ATP5J2-PTCD1G3V325 749 aa13.89□□□□□ -0.19
VRK3-214ENST00000598553 HOXA10P31260 410 aaPredicted RBP13.89□□□□□ -0.19
VRK3-214ENST00000598553 FKBP4Q02790 459 aaKnown RBP eCLIP13.89□□□□□ -0.19
VRK3-214ENST00000598553 TCIRG1Q13488 830 aa13.89□□□□□ -0.19
VRK3-214ENST00000598553 RBM46Q8TBY0 533 aaKnown RBP13.89□□□□□ -0.19
VRK3-214ENST00000598553 UTP14AQ9BVJ6 771 aaKnown RBP13.89□□□□□ -0.19
VRK3-214ENST00000598553 IFT57Q9NWB7 429 aa13.89□□□□□ -0.19
VRK3-214ENST00000598553 ABCC4O15439 1325 aa13.89□□□□□ -0.19
VRK3-214ENST00000598553 RPGRQ92834 1020 aaKnown RBP13.88□□□□□ -0.19
VRK3-214ENST00000598553 ISCA1Q9BUE6 129 aa13.88□□□□□ -0.19
VRK3-214ENST00000598553 MRS2Q9HD23 443 aa13.88□□□□□ -0.19
VRK3-214ENST00000598553 HOXB7P09629 217 aa13.87□□□□□ -0.19
VRK3-214ENST00000598553 PARP10Q53GL7 1025 aa13.87□□□□□ -0.19
VRK3-214ENST00000598553 RTL5Q5HYW3 569 aaPredicted RBP13.87□□□□□ -0.19
VRK3-214ENST00000598553 SLC10A5Q5PT55 438 aa13.87□□□□□ -0.19
VRK3-214ENST00000598553 MYH3P11055 1940 aa13.86□□□□□ -0.19
VRK3-214ENST00000598553 PPEF1O14829 653 aaPredicted RBP13.86□□□□□ -0.19
VRK3-214ENST00000598553 IARSP41252 1262 aaKnown RBP13.86□□□□□ -0.19
VRK3-214ENST00000598553 GNAI1P63096 354 aa13.86□□□□□ -0.19
VRK3-214ENST00000598553 PPP1R42Q7Z4L9 355 aa13.86□□□□□ -0.19
VRK3-214ENST00000598553 PLBD2Q8NHP8 589 aa13.86□□□□□ -0.19
VRK3-214ENST00000598553 JARID2Q92833 1246 aaPredicted RBP13.86□□□□□ -0.19
VRK3-214ENST00000598553 DBF4Q9UBU7 674 aaPredicted RBP13.86□□□□□ -0.19
VRK3-214ENST00000598553 SALL2Q9Y467 1007 aaPredicted RBP13.86□□□□□ -0.19
VRK3-214ENST00000598553 CEP350Q5VT06 3117 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 ALDH1B1P30837 517 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 SOGA3Q5TF21 947 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 ANKRD13DQ6ZTN6 518 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 WWC1Q8IX03 1113 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 C16orf71Q8IYS4 520 aaPredicted RBP13.85□□□□□ -0.19
VRK3-214ENST00000598553 DNAJC5GQ8N7S2 189 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 FAM89AQ96GI7 184 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 CRAMP1Q96RY5 1269 aa13.85□□□□□ -0.19
VRK3-214ENST00000598553 TRMT112Q9UI30 125 aaKnown RBP13.85□□□□□ -0.19
VRK3-214ENST00000598553 VEGFAP15692 232 aaPredicted RBP13.84□□□□□ -0.19
VRK3-214ENST00000598553 G2E3Q7L622 706 aa13.84□□□□□ -0.19
VRK3-214ENST00000598553 RBM17Q96I25 401 aaKnown RBP13.84□□□□□ -0.19
VRK3-214ENST00000598553 NLRP3Q96P20 1036 aa13.84□□□□□ -0.19
VRK3-214ENST00000598553 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
VRK3-214ENST00000598553 SH3TC1Q8TE82 1336 aa13.84□□□□□ -0.19
VRK3-214ENST00000598553 SCN9AQ15858 1988 aa13.83□□□□□ -0.19
VRK3-214ENST00000598553 FZD9O00144 591 aa13.83□□□□□ -0.2
VRK3-214ENST00000598553 HSP90AB3PQ58FF7 597 aa13.83□□□□□ -0.2
VRK3-214ENST00000598553 RTKN2Q8IZC4 609 aa13.83□□□□□ -0.2
VRK3-214ENST00000598553 HYPKQ9NX55 129 aa13.83□□□□□ -0.2
VRK3-214ENST00000598553 RNF123Q5XPI4 1314 aa13.83□□□□□ -0.2
VRK3-214ENST00000598553 CACNA1FO60840 1977 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 ANP32CO43423 234 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 APLP1P51693 650 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 FSTL1Q12841 308 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 CCDC27Q2M243 656 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 SMC1BQ8NDV3 1235 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 CELF1Q92879 486 aaKnown RBP13.82□□□□□ -0.2
VRK3-214ENST00000598553 PSMD1Q99460 953 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 MYD88Q99836 296 aa13.82□□□□□ -0.2
VRK3-214ENST00000598553 AOC3Q16853 763 aa13.81□□□□□ -0.2
VRK3-214ENST00000598553 DPY19L2Q6NUT2 758 aa13.81□□□□□ -0.2
VRK3-214ENST00000598553 L3MBTL3Q96JM7 780 aaPredicted RBP13.81□□□□□ -0.2
VRK3-214ENST00000598553 ATP6V0A2Q9Y487 856 aa13.81□□□□□ -0.2
VRK3-214ENST00000598553 FANCIQ9NVI1 1328 aa13.81□□□□□ -0.2
VRK3-214ENST00000598553 ZNF646O15015 1829 aaPredicted RBP13.8□□□□□ -0.2
VRK3-214ENST00000598553 RIC3Q7Z5B4 369 aa13.8□□□□□ -0.2
VRK3-214ENST00000598553 TAF1DQ9H5J8 278 aaPredicted RBP13.8□□□□□ -0.2
VRK3-214ENST00000598553 A0A1B0GUL6 1792 aa13.8□□□□□ -0.2
VRK3-214ENST00000598553 GRAPQ13588 217 aa13.79□□□□□ -0.2
VRK3-214ENST00000598553 GRAPLQ8TC17 118 aaPredicted RBP13.79□□□□□ -0.2
VRK3-214ENST00000598553 GPR101Q96P66 508 aaPredicted RBP13.79□□□□□ -0.2
VRK3-214ENST00000598553 SEC31BQ9NQW1 1179 aa13.79□□□□□ -0.2
VRK3-214ENST00000598553 MAP3K2Q9Y2U5 619 aa13.79□□□□□ -0.2
VRK3-214ENST00000598553 IRS4O14654 1257 aaPredicted RBP13.78□□□□□ -0.2
VRK3-214ENST00000598553 PPIP5K2O43314 1243 aa13.78□□□□□ -0.2
VRK3-214ENST00000598553 IGKV5-2P06315 115 aa13.78□□□□□ -0.2
VRK3-214ENST00000598553 SCNN1DP51172 638 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms