RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ARHGEF1Q92888 912 aaKnown RBP19.32■□□□□ 0.68
UPF1-206ENST00000598471 AKT1S1Q96B36 256 aa19.32■□□□□ 0.68
UPF1-206ENST00000598471 STK32BQ9NY57 414 aa19.32■□□□□ 0.68
UPF1-206ENST00000598471 UBR3Q6ZT12 1888 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 NUP98P52948 1817 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 GPTP24298 496 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 CEP85Q6P2H3 762 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 NLRP10Q86W26 655 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 ZNF34Q8IZ26 560 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 FLAD1Q8NFF5 587 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 TFCP2L1Q9NZI6 479 aa19.31■□□□□ 0.68
UPF1-206ENST00000598471 USP42Q9H9J4 1324 aaKnown RBP19.3■□□□□ 0.68
UPF1-206ENST00000598471 H7C1W4 665 aa19.3■□□□□ 0.68
UPF1-206ENST00000598471 USPL1Q5W0Q7 1092 aa19.3■□□□□ 0.68
UPF1-206ENST00000598471 UBE3BQ7Z3V4 1068 aa19.3■□□□□ 0.68
UPF1-206ENST00000598471 PDGFDQ9GZP0 370 aaPredicted RBP19.3■□□□□ 0.68
UPF1-206ENST00000598471 KDM2BQ8NHM5 1336 aa19.29■□□□□ 0.68
UPF1-206ENST00000598471 PCCAP05165 728 aaPredicted RBP19.29■□□□□ 0.68
UPF1-206ENST00000598471 NIP7Q9Y221 180 aaKnown RBP eCLIP19.29■□□□□ 0.68
UPF1-206ENST00000598471 C4AP0C0L4 1744 aa19.28■□□□□ 0.68
UPF1-206ENST00000598471 SMIM5Q71RC9 77 aa19.28■□□□□ 0.68
UPF1-206ENST00000598471 PPP1R42Q7Z4L9 355 aa19.28■□□□□ 0.68
UPF1-206ENST00000598471 ZBTB38Q8NAP3 1195 aaPredicted RBP19.28■□□□□ 0.68
UPF1-206ENST00000598471 SUCLG2Q96I99 432 aa19.28■□□□□ 0.68
UPF1-206ENST00000598471 SRP68Q9UHB9 627 aaKnown RBP19.28■□□□□ 0.68
UPF1-206ENST00000598471 IGHDP01880 384 aa19.27■□□□□ 0.68
UPF1-206ENST00000598471 HSP90B1P14625 803 aaKnown RBP19.27■□□□□ 0.68
UPF1-206ENST00000598471 ATP8B2P98198 1209 aa19.27■□□□□ 0.68
UPF1-206ENST00000598471 AMIGO3Q86WK7 504 aa19.27■□□□□ 0.68
UPF1-206ENST00000598471 TRMT112Q9UI30 125 aaKnown RBP19.27■□□□□ 0.68
UPF1-206ENST00000598471 UBN2Q6ZU65 1347 aa19.26■□□□□ 0.67
UPF1-206ENST00000598471 CASP7P55210 303 aa19.26■□□□□ 0.67
UPF1-206ENST00000598471 UTP14AQ9BVJ6 771 aaKnown RBP19.26■□□□□ 0.67
UPF1-206ENST00000598471 CDHR2Q9BYE9 1310 aa19.25■□□□□ 0.67
UPF1-206ENST00000598471 MTX1Q13505 466 aa19.25■□□□□ 0.67
UPF1-206ENST00000598471 SIRT2Q8IXJ6 389 aa19.25■□□□□ 0.67
UPF1-206ENST00000598471 GCC1Q96CN9 775 aa19.25■□□□□ 0.67
UPF1-206ENST00000598471 SETDB2Q96T68 719 aa19.25■□□□□ 0.67
UPF1-206ENST00000598471 BICC1Q9H694 974 aaKnown RBP19.25■□□□□ 0.67
UPF1-206ENST00000598471 BCL2L12Q9HB09 334 aa19.25■□□□□ 0.67
UPF1-206ENST00000598471 NYXQ9GZU5 481 aa19.24■□□□□ 0.67
UPF1-206ENST00000598471 SH3TC1Q8TE82 1336 aa19.24■□□□□ 0.67
UPF1-206ENST00000598471 MSH5O43196 834 aa19.23■□□□□ 0.67
UPF1-206ENST00000598471 SRGAP3O43295 1099 aa19.23■□□□□ 0.67
UPF1-206ENST00000598471 RTL5Q5HYW3 569 aaPredicted RBP19.23■□□□□ 0.67
UPF1-206ENST00000598471 SUSD4Q5VX71 490 aa19.23■□□□□ 0.67
UPF1-206ENST00000598471 TBC1D9BQ66K14 1250 aa19.23■□□□□ 0.67
UPF1-206ENST00000598471 JARID2Q92833 1246 aaPredicted RBP19.23■□□□□ 0.67
UPF1-206ENST00000598471 FAM89AQ96GI7 184 aa19.23■□□□□ 0.67
UPF1-206ENST00000598471 BICDL1Q6ZP65 573 aa19.22■□□□□ 0.67
UPF1-206ENST00000598471 SMC5Q8IY18 1101 aa19.22■□□□□ 0.67
UPF1-206ENST00000598471 SSH3Q8TE77 659 aa19.22■□□□□ 0.67
UPF1-206ENST00000598471 KAZALD1Q96I82 304 aa19.22■□□□□ 0.67
UPF1-206ENST00000598471 PLA2G12BQ9BX93 195 aa19.22■□□□□ 0.67
UPF1-206ENST00000598471 PNPLA7Q6ZV29 1317 aa19.22■□□□□ 0.67
UPF1-206ENST00000598471 CARMIL3Q8ND23 1372 aa19.21■□□□□ 0.67
UPF1-206ENST00000598471 PNMA6EA0A0J9YXQ4 647 aa19.21■□□□□ 0.67
UPF1-206ENST00000598471 FAM177BA6PVY3 158 aa19.21■□□□□ 0.67
UPF1-206ENST00000598471 IRS4O14654 1257 aaPredicted RBP19.21■□□□□ 0.67
UPF1-206ENST00000598471 NTSR2O95665 410 aa19.21■□□□□ 0.67
UPF1-206ENST00000598471 GYS1P13807 737 aa19.21■□□□□ 0.67
UPF1-206ENST00000598471 POLA2Q14181 598 aa19.21■□□□□ 0.67
UPF1-206ENST00000598471 RABL6Q3YEC7 729 aaPredicted RBP19.21■□□□□ 0.67
UPF1-206ENST00000598471 COL23A1Q86Y22 540 aaPredicted RBP19.21■□□□□ 0.67
UPF1-206ENST00000598471 DCTPP1Q9H773 170 aa19.21■□□□□ 0.67
UPF1-206ENST00000598471 GTF2E1P29083 439 aaPredicted RBP19.2■□□□□ 0.66
UPF1-206ENST00000598471 ZBTB47Q9UFB7 747 aaPredicted RBP19.2■□□□□ 0.66
UPF1-206ENST00000598471 TUBGCP6Q96RT7 1819 aa19.2■□□□□ 0.66
UPF1-206ENST00000598471 COL24A1Q17RW2 1714 aa19.2■□□□□ 0.66
UPF1-206ENST00000598471 PDE8AO60658 829 aa19.19■□□□□ 0.66
UPF1-206ENST00000598471 ZBTB7AO95365 584 aa19.19■□□□□ 0.66
UPF1-206ENST00000598471 FOXO4P98177 505 aa19.19■□□□□ 0.66
UPF1-206ENST00000598471 EPHA10Q5JZY3 1008 aa19.19■□□□□ 0.66
UPF1-206ENST00000598471 LMBR1LQ6UX01 489 aa19.19■□□□□ 0.66
UPF1-206ENST00000598471 NBPF5PQ86XG9 351 aaPredicted RBP19.19■□□□□ 0.66
UPF1-206ENST00000598471 PELP1Q8IZL8 1130 aaKnown RBP19.19■□□□□ 0.66
UPF1-206ENST00000598471 CHMP3Q9Y3E7 222 aa19.19■□□□□ 0.66
UPF1-206ENST00000598471 QSER1Q2KHR3 1735 aa19.19■□□□□ 0.66
UPF1-206ENST00000598471 NPHP1O15259 732 aa19.18■□□□□ 0.66
UPF1-206ENST00000598471 HSP90AB4PQ58FF6 505 aa19.18■□□□□ 0.66
UPF1-206ENST00000598471 TPTE2Q6XPS3 522 aa19.18■□□□□ 0.66
UPF1-206ENST00000598471 NLGN1Q8N2Q7 840 aa19.18■□□□□ 0.66
UPF1-206ENST00000598471 ATF5Q9Y2D1 282 aaPredicted RBP19.18■□□□□ 0.66
UPF1-206ENST00000598471 NFIXQ14938 502 aa19.17■□□□□ 0.66
UPF1-206ENST00000598471 CTSWP56202 376 aa19.16■□□□□ 0.66
UPF1-206ENST00000598471 LAMB2P55268 1798 aa19.16■□□□□ 0.66
UPF1-206ENST00000598471 RAB11FIP3O75154 756 aa19.15■□□□□ 0.66
UPF1-206ENST00000598471 SURF6O75683 361 aaKnown RBP19.15■□□□□ 0.66
UPF1-206ENST00000598471 NUTM1Q86Y26 1132 aa19.15■□□□□ 0.66
UPF1-206ENST00000598471 PDZRN3Q9UPQ7 1066 aa19.15■□□□□ 0.66
UPF1-206ENST00000598471 CSF1RP07333 972 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 HCLS1P14317 486 aaPredicted RBP19.14■□□□□ 0.65
UPF1-206ENST00000598471 NUCB1Q02818 461 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 OS9Q13438 667 aaPredicted RBP19.14■□□□□ 0.65
UPF1-206ENST00000598471 CCDC57Q2TAC2 916 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 ERFEQ4G0M1 354 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 ANKRD45Q5TZF3 282 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 ERC1Q8IUD2 1116 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 SYNE4Q8N205 404 aa19.14■□□□□ 0.65
UPF1-206ENST00000598471 CNBD1Q8NA66 436 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms