RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 NLRP10Q86W26 655 aa21.52■■□□□ 1.04
USHBP1-208ENST00000598309 SLX4Q8IY92 1834 aa21.52■■□□□ 1.04
USHBP1-208ENST00000598309 LTBP3Q9NS15 1303 aa21.52■■□□□ 1.03
USHBP1-208ENST00000598309 ALDH1B1P30837 517 aa21.51■■□□□ 1.03
USHBP1-208ENST00000598309 TSPYL6Q8N831 410 aa21.51■■□□□ 1.03
USHBP1-208ENST00000598309 SBF1O95248 1867 aa21.5■■□□□ 1.03
USHBP1-208ENST00000598309 SLC10A5Q5PT55 438 aa21.5■■□□□ 1.03
USHBP1-208ENST00000598309 ZNF526Q8TF50 670 aaPredicted RBP21.5■■□□□ 1.03
USHBP1-208ENST00000598309 C7orf43Q8WVR3 580 aa21.5■■□□□ 1.03
USHBP1-208ENST00000598309 FANCIQ9NVI1 1328 aa21.5■■□□□ 1.03
USHBP1-208ENST00000598309 HOXA10P31260 410 aaPredicted RBP21.49■■□□□ 1.03
USHBP1-208ENST00000598309 GOLGA2Q08379 1002 aa21.49■■□□□ 1.03
USHBP1-208ENST00000598309 RPGRQ92834 1020 aaKnown RBP21.49■■□□□ 1.03
USHBP1-208ENST00000598309 ISCA1Q9BUE6 129 aa21.49■■□□□ 1.03
USHBP1-208ENST00000598309 TAOK3Q9H2K8 898 aa21.49■■□□□ 1.03
USHBP1-208ENST00000598309 FER1L6Q2WGJ9 1857 aa21.49■■□□□ 1.03
USHBP1-208ENST00000598309 PRELPP51888 382 aa21.48■■□□□ 1.03
USHBP1-208ENST00000598309 TWISTNBQ3B726 338 aaPredicted RBP21.48■■□□□ 1.03
USHBP1-208ENST00000598309 CCDC93Q567U6 631 aa21.48■■□□□ 1.03
USHBP1-208ENST00000598309 ZNF219Q9P2Y4 722 aaPredicted RBP21.48■■□□□ 1.03
USHBP1-208ENST00000598309 SALL2Q9Y467 1007 aaPredicted RBP21.48■■□□□ 1.03
USHBP1-208ENST00000598309 NLRP3Q96P20 1036 aa21.47■■□□□ 1.03
USHBP1-208ENST00000598309 PHAXQ9H814 394 aaKnown RBP21.47■■□□□ 1.03
USHBP1-208ENST00000598309 SH3TC1Q8TE82 1336 aa21.47■■□□□ 1.03
USHBP1-208ENST00000598309 CACNA1SQ13698 1873 aa21.47■■□□□ 1.03
USHBP1-208ENST00000598309 C1QTNF8P60827 252 aa21.46■■□□□ 1.03
USHBP1-208ENST00000598309 TRIM28Q13263 835 aaKnown RBP21.46■■□□□ 1.03
USHBP1-208ENST00000598309 CRAMP1Q96RY5 1269 aa21.46■■□□□ 1.03
USHBP1-208ENST00000598309 STK31Q9BXU1 1019 aa21.46■■□□□ 1.03
USHBP1-208ENST00000598309 TRMT112Q9UI30 125 aaKnown RBP21.46■■□□□ 1.03
USHBP1-208ENST00000598309 DDX58O95786 925 aaKnown RBP21.45■■□□□ 1.02
USHBP1-208ENST00000598309 C3orf67Q6ZVT6 689 aa21.45■■□□□ 1.02
USHBP1-208ENST00000598309 RIC3Q7Z5B4 369 aa21.45■■□□□ 1.02
USHBP1-208ENST00000598309 RBM17Q96I25 401 aaKnown RBP21.45■■□□□ 1.02
USHBP1-208ENST00000598309 CCER2I3L3R5 266 aa21.44■■□□□ 1.02
USHBP1-208ENST00000598309 CC2D2BQ6DHV5 1058 aa21.44■■□□□ 1.02
USHBP1-208ENST00000598309 RTKN2Q8IZC4 609 aa21.44■■□□□ 1.02
USHBP1-208ENST00000598309 KDM2BQ8NHM5 1336 aa21.44■■□□□ 1.02
USHBP1-208ENST00000598309 ATP5J2-PTCD1G3V325 749 aa21.43■■□□□ 1.02
USHBP1-208ENST00000598309 MYH16Q9H6N6 1097 aa21.43■■□□□ 1.02
USHBP1-208ENST00000598309 TIAM2Q8IVF5 1701 aa21.43■■□□□ 1.02
USHBP1-208ENST00000598309 KIF3CO14782 793 aa21.42■■□□□ 1.02
USHBP1-208ENST00000598309 FKBP4Q02790 459 aaKnown RBP eCLIP21.42■■□□□ 1.02
USHBP1-208ENST00000598309 SNED1Q8TER0 1413 aa21.42■■□□□ 1.02
USHBP1-208ENST00000598309 ZNF521Q96K83 1311 aa21.42■■□□□ 1.02
USHBP1-208ENST00000598309 HCLS1P14317 486 aaPredicted RBP21.41■■□□□ 1.02
USHBP1-208ENST00000598309 GRIPAP1Q4V328 841 aa21.41■■□□□ 1.02
USHBP1-208ENST00000598309 EXOSC9Q06265 439 aaKnown RBP21.4■■□□□ 1.02
USHBP1-208ENST00000598309 SYNE4Q8N205 404 aa21.4■■□□□ 1.02
USHBP1-208ENST00000598309 METTL22Q9BUU2 404 aaPredicted RBP21.4■■□□□ 1.02
USHBP1-208ENST00000598309 SPINK5Q9NQ38 1064 aaPredicted RBP21.4■■□□□ 1.02
USHBP1-208ENST00000598309 PPEF1O14829 653 aaPredicted RBP21.39■■□□□ 1.01
USHBP1-208ENST00000598309 VAMP4O75379 141 aa21.39■■□□□ 1.01
USHBP1-208ENST00000598309 OLFM4Q6UX06 510 aa21.39■■□□□ 1.01
USHBP1-208ENST00000598309 KSR2Q6VAB6 950 aa21.39■■□□□ 1.01
USHBP1-208ENST00000598309 CCDC191Q8NCU4 936 aa21.39■■□□□ 1.01
USHBP1-208ENST00000598309 PSMD1Q99460 953 aa21.39■■□□□ 1.01
USHBP1-208ENST00000598309 MYD88Q99836 296 aa21.39■■□□□ 1.01
USHBP1-208ENST00000598309 NMRK2Q9NPI5 230 aa21.39■■□□□ 1.01
USHBP1-208ENST00000598309 DICER1Q9UPY3 1922 aaKnown RBP21.39■■□□□ 1.01
USHBP1-208ENST00000598309 ABCC4O15439 1325 aa21.38■■□□□ 1.01
USHBP1-208ENST00000598309 GLTPD2A6NH11 291 aa21.38■■□□□ 1.01
USHBP1-208ENST00000598309 SLC4A2P04920 1241 aa21.38■■□□□ 1.01
USHBP1-208ENST00000598309 ZBTB38Q8NAP3 1195 aaPredicted RBP21.38■■□□□ 1.01
USHBP1-208ENST00000598309 FAM89AQ96GI7 184 aa21.38■■□□□ 1.01
USHBP1-208ENST00000598309 MAP3K2Q9Y2U5 619 aa21.38■■□□□ 1.01
USHBP1-208ENST00000598309 CCDC88AQ3V6T2 1871 aa21.38■■□□□ 1.01
USHBP1-208ENST00000598309 LAMB2P55268 1798 aa21.38■■□□□ 1.01
USHBP1-208ENST00000598309 TCERG1O14776 1098 aaKnown RBP21.37■■□□□ 1.01
USHBP1-208ENST00000598309 HSP90B1P14625 803 aaKnown RBP21.37■■□□□ 1.01
USHBP1-208ENST00000598309 DDX60Q8IY21 1712 aaKnown RBP21.37■■□□□ 1.01
USHBP1-208ENST00000598309 PI4KAP2A4QPH2 592 aa21.36■■□□□ 1.01
USHBP1-208ENST00000598309 SF3B3Q15393 1217 aaKnown RBP21.36■■□□□ 1.01
USHBP1-208ENST00000598309 DDX46Q7L014 1031 aaKnown RBP21.36■■□□□ 1.01
USHBP1-208ENST00000598309 PI4KAP1Q8N8J0 262 aa21.36■■□□□ 1.01
USHBP1-208ENST00000598309 CWC25Q9NXE8 425 aaPredicted RBP21.36■■□□□ 1.01
USHBP1-208ENST00000598309 ATP6V0A2Q9Y487 856 aa21.36■■□□□ 1.01
USHBP1-208ENST00000598309 IRS4O14654 1257 aaPredicted RBP21.35■■□□□ 1.01
USHBP1-208ENST00000598309 BBOX1O75936 387 aa21.35■■□□□ 1.01
USHBP1-208ENST00000598309 FLIIQ13045 1269 aa21.35■■□□□ 1.01
USHBP1-208ENST00000598309 DPY19L2Q6NUT2 758 aa21.35■■□□□ 1.01
USHBP1-208ENST00000598309 G2E3Q7L622 706 aa21.35■■□□□ 1.01
USHBP1-208ENST00000598309 TMX4Q9H1E5 349 aaPredicted RBP21.35■■□□□ 1.01
USHBP1-208ENST00000598309 ZNF277Q9NRM2 450 aaPredicted RBP21.35■■□□□ 1.01
USHBP1-208ENST00000598309 TOMM70O94826 608 aa21.34■■□□□ 1.01
USHBP1-208ENST00000598309 PCCAP05165 728 aaPredicted RBP21.34■■□□□ 1.01
USHBP1-208ENST00000598309 IARSP41252 1262 aaKnown RBP21.34■■□□□ 1.01
USHBP1-208ENST00000598309 NEXNQ0ZGT2 675 aa21.34■■□□□ 1.01
USHBP1-208ENST00000598309 GRAPQ13588 217 aa21.34■■□□□ 1.01
USHBP1-208ENST00000598309 TMC4Q7Z404 712 aa21.34■■□□□ 1.01
USHBP1-208ENST00000598309 GRAPLQ8TC17 118 aaPredicted RBP21.34■■□□□ 1.01
USHBP1-208ENST00000598309 ZNF428Q96B54 188 aa21.34■■□□□ 1.01
USHBP1-208ENST00000598309 CACNA1FO60840 1977 aa21.34■■□□□ 1.01
USHBP1-208ENST00000598309 SP8Q8IXZ3 490 aa21.32■■□□□ 1
USHBP1-208ENST00000598309 WDR90Q96KV7 1748 aa21.32■■□□□ 1
USHBP1-208ENST00000598309 CDHR2Q9BYE9 1310 aa21.31■■□□□ 1
USHBP1-208ENST00000598309 E9PSI1 815 aa21.31■■□□□ 1
USHBP1-208ENST00000598309 IGKV5-2P06315 115 aa21.31■■□□□ 1
USHBP1-208ENST00000598309 FKBP5Q13451 457 aaPredicted RBP21.31■■□□□ 1
USHBP1-208ENST00000598309 RTL5Q5HYW3 569 aaPredicted RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms