RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 AKT1S1Q96B36 256 aa18.99■□□□□ 0.63
TRIM28-209ENST00000597423 SETDB2Q96T68 719 aa18.99■□□□□ 0.63
TRIM28-209ENST00000597423 STK32BQ9NY57 414 aa18.99■□□□□ 0.63
TRIM28-209ENST00000597423 C4BP0C0L5 1744 aa18.99■□□□□ 0.63
TRIM28-209ENST00000597423 SIRT2Q8IXJ6 389 aa18.98■□□□□ 0.63
TRIM28-209ENST00000597423 SUCLG2Q96I99 432 aa18.98■□□□□ 0.63
TRIM28-209ENST00000597423 USP42Q9H9J4 1324 aaKnown RBP18.98■□□□□ 0.63
TRIM28-209ENST00000597423 MYH14Q7Z406 1995 aaKnown RBP18.97■□□□□ 0.63
TRIM28-209ENST00000597423 ARFGEF2Q9Y6D5 1785 aa18.97■□□□□ 0.63
TRIM28-209ENST00000597423 SRGAP3O43295 1099 aa18.97■□□□□ 0.63
TRIM28-209ENST00000597423 MTX1Q13505 466 aa18.97■□□□□ 0.63
TRIM28-209ENST00000597423 NYXQ9GZU5 481 aa18.97■□□□□ 0.63
TRIM28-209ENST00000597423 DCTPP1Q9H773 170 aa18.97■□□□□ 0.63
TRIM28-209ENST00000597423 N4BP2Q86UW6 1770 aaPredicted RBP18.96■□□□□ 0.63
TRIM28-209ENST00000597423 MSH5O43196 834 aa18.96■□□□□ 0.63
TRIM28-209ENST00000597423 CASP7P55210 303 aa18.96■□□□□ 0.63
TRIM28-209ENST00000597423 HSP90AB4PQ58FF6 505 aa18.96■□□□□ 0.63
TRIM28-209ENST00000597423 SMC5Q8IY18 1101 aa18.96■□□□□ 0.63
TRIM28-209ENST00000597423 SSH3Q8TE77 659 aa18.96■□□□□ 0.63
TRIM28-209ENST00000597423 SRP68Q9UHB9 627 aaKnown RBP18.96■□□□□ 0.63
TRIM28-209ENST00000597423 SH3TC1Q8TE82 1336 aa18.96■□□□□ 0.63
TRIM28-209ENST00000597423 CDHR2Q9BYE9 1310 aa18.96■□□□□ 0.63
TRIM28-209ENST00000597423 GTF2E1P29083 439 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-209ENST00000597423 SUSD4Q5VX71 490 aa18.95■□□□□ 0.62
TRIM28-209ENST00000597423 TPTE2Q6XPS3 522 aa18.95■□□□□ 0.62
TRIM28-209ENST00000597423 FAM89AQ96GI7 184 aa18.95■□□□□ 0.62
TRIM28-209ENST00000597423 PLA2G12BQ9BX93 195 aa18.95■□□□□ 0.62
TRIM28-209ENST00000597423 BICC1Q9H694 974 aaKnown RBP18.95■□□□□ 0.62
TRIM28-209ENST00000597423 NUP188Q5SRE5 1749 aa18.94■□□□□ 0.62
TRIM28-209ENST00000597423 IRS4O14654 1257 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-209ENST00000597423 SLC15A2Q16348 729 aa18.94■□□□□ 0.62
TRIM28-209ENST00000597423 SMIM5Q71RC9 77 aa18.94■□□□□ 0.62
TRIM28-209ENST00000597423 NLGN1Q8N2Q7 840 aa18.94■□□□□ 0.62
TRIM28-209ENST00000597423 JARID2Q92833 1246 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-209ENST00000597423 BCL2L12Q9HB09 334 aa18.94■□□□□ 0.62
TRIM28-209ENST00000597423 TAF1LQ8IZX4 1826 aa18.94■□□□□ 0.62
TRIM28-209ENST00000597423 RGPD3A6NKT7 1758 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-209ENST00000597423 RGPD4Q7Z3J3 1758 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 PDE8AO60658 829 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 POLA2Q14181 598 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 ZNF827Q17R98 1081 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 RABL6Q3YEC7 729 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-209ENST00000597423 RTL5Q5HYW3 569 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-209ENST00000597423 TBC1D9BQ66K14 1250 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 BICDL1Q6ZP65 573 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 KAZALD1Q96I82 304 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 TNS1Q9HBL0 1735 aaKnown RBP18.93■□□□□ 0.62
TRIM28-209ENST00000597423 UBN2Q6ZU65 1347 aa18.93■□□□□ 0.62
TRIM28-209ENST00000597423 PNMA6EA0A0J9YXQ4 647 aa18.92■□□□□ 0.62
TRIM28-209ENST00000597423 RAB11FIP3O75154 756 aa18.92■□□□□ 0.62
TRIM28-209ENST00000597423 LMBR1LQ6UX01 489 aa18.92■□□□□ 0.62
TRIM28-209ENST00000597423 DEFB132Q7Z7B7 95 aa18.92■□□□□ 0.62
TRIM28-209ENST00000597423 AMIGO3Q86WK7 504 aa18.92■□□□□ 0.62
TRIM28-209ENST00000597423 NBPF5PQ86XG9 351 aaPredicted RBP18.92■□□□□ 0.62
TRIM28-209ENST00000597423 FAM177BA6PVY3 158 aa18.91■□□□□ 0.62
TRIM28-209ENST00000597423 NPHP1O15259 732 aa18.91■□□□□ 0.62
TRIM28-209ENST00000597423 SURF6O75683 361 aaKnown RBP18.91■□□□□ 0.62
TRIM28-209ENST00000597423 FOXO4P98177 505 aa18.91■□□□□ 0.62
TRIM28-209ENST00000597423 ANKRD45Q5TZF3 282 aa18.91■□□□□ 0.62
TRIM28-209ENST00000597423 CHMP3Q9Y3E7 222 aa18.91■□□□□ 0.62
TRIM28-209ENST00000597423 GYS1P13807 737 aa18.9■□□□□ 0.62
TRIM28-209ENST00000597423 NUCB1Q02818 461 aa18.9■□□□□ 0.62
TRIM28-209ENST00000597423 COL23A1Q86Y22 540 aaPredicted RBP18.9■□□□□ 0.62
TRIM28-209ENST00000597423 ERC1Q8IUD2 1116 aa18.9■□□□□ 0.62
TRIM28-209ENST00000597423 NTSR2O95665 410 aa18.89■□□□□ 0.61
TRIM28-209ENST00000597423 CSF1RP07333 972 aa18.89■□□□□ 0.61
TRIM28-209ENST00000597423 G3BP1Q13283 466 aaKnown RBP eCLIP18.89■□□□□ 0.614e-10■■■□□ 14.9
TRIM28-209ENST00000597423 OS9Q13438 667 aaPredicted RBP18.89■□□□□ 0.61
TRIM28-209ENST00000597423 CCDC57Q2TAC2 916 aa18.89■□□□□ 0.61
TRIM28-209ENST00000597423 EPHA10Q5JZY3 1008 aa18.89■□□□□ 0.61
TRIM28-209ENST00000597423 SLC10A5Q5PT55 438 aa18.89■□□□□ 0.61
TRIM28-209ENST00000597423 PDZRN3Q9UPQ7 1066 aa18.89■□□□□ 0.61
TRIM28-209ENST00000597423 NOP58Q9Y2X3 529 aaKnown RBP18.89■□□□□ 0.61
TRIM28-209ENST00000597423 NFIXQ14938 502 aa18.88■□□□□ 0.61
TRIM28-209ENST00000597423 CHD1LQ86WJ1 897 aa18.88■□□□□ 0.61
TRIM28-209ENST00000597423 CARMIL3Q8ND23 1372 aa18.88■□□□□ 0.61
TRIM28-209ENST00000597423 NUP98P52948 1817 aa18.88■□□□□ 0.61
TRIM28-209ENST00000597423 AFDNP55196 1824 aaKnown RBP18.88■□□□□ 0.61
TRIM28-209ENST00000597423 EP400Q96L91 3159 aa18.87■□□□□ 0.61
TRIM28-209ENST00000597423 TM4SF1P30408 202 aa18.87■□□□□ 0.61
TRIM28-209ENST00000597423 CTSWP56202 376 aa18.87■□□□□ 0.61
TRIM28-209ENST00000597423 IFIT5Q13325 482 aaKnown RBP18.87■□□□□ 0.61
TRIM28-209ENST00000597423 TAF7LQ5H9L4 462 aa18.87■□□□□ 0.61
TRIM28-209ENST00000597423 COPRSQ9NQ92 184 aa18.87■□□□□ 0.61
TRIM28-209ENST00000597423 PNPLA7Q6ZV29 1317 aa18.86■□□□□ 0.61
TRIM28-209ENST00000597423 CCDC152Q4G0S7 254 aa18.86■□□□□ 0.61
TRIM28-209ENST00000597423 TTLL11Q8NHH1 800 aa18.86■□□□□ 0.61
TRIM28-209ENST00000597423 UPF1Q92900 1129 aaKnown RBP eCLIP18.86■□□□□ 0.61
TRIM28-209ENST00000597423 NLRP3Q96P20 1036 aa18.86■□□□□ 0.61
TRIM28-209ENST00000597423 LRRCC1Q9C099 1032 aa18.86■□□□□ 0.61
TRIM28-209ENST00000597423 ANKRD18BA2A2Z9 1011 aa18.85■□□□□ 0.61
TRIM28-209ENST00000597423 HCLS1P14317 486 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-209ENST00000597423 ERFEQ4G0M1 354 aa18.85■□□□□ 0.61
TRIM28-209ENST00000597423 NUTM1Q86Y26 1132 aa18.85■□□□□ 0.61
TRIM28-209ENST00000597423 SYNE4Q8N205 404 aa18.85■□□□□ 0.61
TRIM28-209ENST00000597423 KIF1BPQ96EK5 621 aa18.85■□□□□ 0.61
TRIM28-209ENST00000597423 FBXO3Q9UK99 471 aa18.85■□□□□ 0.61
TRIM28-209ENST00000597423 EXOC6BQ9Y2D4 811 aa18.85■□□□□ 0.61
TRIM28-209ENST00000597423 SERPINB2P05120 415 aa18.84■□□□□ 0.61
TRIM28-209ENST00000597423 ST5P78524 1137 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms