RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ADAMTSL1Q8N6G6 1762 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 SCN11AQ9UI33 1791 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 SERPINB2P05120 415 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 CRKLP46109 303 aaKnown RBP12.2□□□□□ -0.46
TRIM28-208ENST00000597172 SLC39A6Q13433 755 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 NFIXQ14938 502 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 TSPYL6Q8N831 410 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 C8orf58Q8NAV2 365 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 MRC1P22897 1456 aa12.2□□□□□ -0.46
TRIM28-208ENST00000597172 AFDNP55196 1824 aaKnown RBP12.19□□□□□ -0.46
TRIM28-208ENST00000597172 EIF4A1P60842 406 aaKnown RBP12.19□□□□□ -0.46
TRIM28-208ENST00000597172 KRT24Q2M2I5 525 aa12.19□□□□□ -0.46
TRIM28-208ENST00000597172 USPL1Q5W0Q7 1092 aa12.19□□□□□ -0.46
TRIM28-208ENST00000597172 SLC17A8Q8NDX2 589 aa12.19□□□□□ -0.46
TRIM28-208ENST00000597172 RNF123Q5XPI4 1314 aa12.18□□□□□ -0.46
TRIM28-208ENST00000597172 ZNF541Q9H0D2 1346 aa12.18□□□□□ -0.46
TRIM28-208ENST00000597172 COL5A3P25940 1745 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-208ENST00000597172 ZNF790Q6PG37 636 aa12.18□□□□□ -0.46
TRIM28-208ENST00000597172 SIPA1L3O60292 1781 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-208ENST00000597172 TRPM7Q96QT4 1865 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 ZNF831Q5JPB2 1677 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 TRAF5O00463 557 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 ELL2O00472 640 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-208ENST00000597172 VAMP4O75379 141 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 SAPCD2Q86UD0 394 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 PDZRN3Q9UPQ7 1066 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 HEG1Q9ULI3 1381 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 SZT2Q5T011 3432 aa12.17□□□□□ -0.46
TRIM28-208ENST00000597172 TWISTNBQ3B726 338 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-208ENST00000597172 SOGA3Q5TF21 947 aa12.15□□□□□ -0.46
TRIM28-208ENST00000597172 CTU1Q7Z7A3 348 aaKnown RBP12.15□□□□□ -0.46
TRIM28-208ENST00000597172 ZNF496Q96IT1 587 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-208ENST00000597172 HHIPL1Q96JK4 782 aa12.15□□□□□ -0.46
TRIM28-208ENST00000597172 HPS5Q9UPZ3 1129 aa12.15□□□□□ -0.46
TRIM28-208ENST00000597172 CARMIL3Q8ND23 1372 aa12.15□□□□□ -0.46
TRIM28-208ENST00000597172 KIAA0100Q14667 2235 aaKnown RBP12.14□□□□□ -0.47
TRIM28-208ENST00000597172 PRAMEF22A3QJZ6 481 aa12.14□□□□□ -0.47
TRIM28-208ENST00000597172 PTCD1O75127 700 aaKnown RBP12.14□□□□□ -0.47
TRIM28-208ENST00000597172 CT47B1P0C2W7 299 aaPredicted RBP12.14□□□□□ -0.47
TRIM28-208ENST00000597172 PDE6BP35913 854 aa12.14□□□□□ -0.47
TRIM28-208ENST00000597172 NOGQ13253 232 aa12.14□□□□□ -0.47
TRIM28-208ENST00000597172 INTS5Q6P9B9 1019 aaKnown RBP12.14□□□□□ -0.47
TRIM28-208ENST00000597172 BICDL1Q6ZP65 573 aa12.14□□□□□ -0.47
TRIM28-208ENST00000597172 RCAN3Q9UKA8 241 aa12.14□□□□□ -0.47
TRIM28-208ENST00000597172 KDM3BQ7LBC6 1761 aa12.14□□□□□ -0.47
TRIM28-208ENST00000597172 NRXN2Q9P2S2 1712 aa12.14□□□□□ -0.47
TRIM28-208ENST00000597172 RARSP54136 660 aaKnown RBP12.13□□□□□ -0.47
TRIM28-208ENST00000597172 CNKSR1Q969H4 720 aa12.13□□□□□ -0.47
TRIM28-208ENST00000597172 ZIC5Q96T25 663 aa12.13□□□□□ -0.47
TRIM28-208ENST00000597172 BRIP1Q9BX63 1249 aa12.13□□□□□ -0.47
TRIM28-208ENST00000597172 NARFQ9UHQ1 456 aa12.13□□□□□ -0.47
TRIM28-208ENST00000597172 BCAR3O75815 825 aa12.12□□□□□ -0.47
TRIM28-208ENST00000597172 CELF2O95319 508 aaKnown RBP12.12□□□□□ -0.47
TRIM28-208ENST00000597172 TTC5Q8N0Z6 440 aa12.12□□□□□ -0.47
TRIM28-208ENST00000597172 GPC2Q8N158 579 aa12.12□□□□□ -0.47
TRIM28-208ENST00000597172 FMNL2Q96PY5 1086 aa12.12□□□□□ -0.47
TRIM28-208ENST00000597172 ZNF277Q9NRM2 450 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-208ENST00000597172 SAGE1Q9NXZ1 904 aa12.12□□□□□ -0.47
TRIM28-208ENST00000597172 LMOD1P29536 600 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-208ENST00000597172 PRPF40BQ6NWY9 871 aaKnown RBP12.11□□□□□ -0.47
TRIM28-208ENST00000597172 SSH1Q8WYL5 1049 aa12.11□□□□□ -0.47
TRIM28-208ENST00000597172 BCL2L12Q9HB09 334 aa12.11□□□□□ -0.47
TRIM28-208ENST00000597172 SUPT16HQ9Y5B9 1047 aaKnown RBP12.11□□□□□ -0.47
TRIM28-208ENST00000597172 USP16Q9Y5T5 823 aa12.11□□□□□ -0.47
TRIM28-208ENST00000597172 SLX4Q8IY92 1834 aa12.11□□□□□ -0.47
TRIM28-208ENST00000597172 SOS1Q07889 1333 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-208ENST00000597172 FZD9O00144 591 aa12.1□□□□□ -0.47
TRIM28-208ENST00000597172 TCERG1O14776 1098 aaKnown RBP12.1□□□□□ -0.47
TRIM28-208ENST00000597172 HOXB7P09629 217 aa12.1□□□□□ -0.47
TRIM28-208ENST00000597172 SNRPA1P09661 255 aaKnown RBP12.1□□□□□ -0.47
TRIM28-208ENST00000597172 ZNF428Q96B54 188 aa12.1□□□□□ -0.47
TRIM28-208ENST00000597172 MKI67P46013 3256 aaKnown RBP12.1□□□□□ -0.47
TRIM28-208ENST00000597172 TRPA1O75762 1119 aa12.09□□□□□ -0.47
TRIM28-208ENST00000597172 EIF2S2P20042 333 aaKnown RBP12.09□□□□□ -0.47
TRIM28-208ENST00000597172 PKN2Q16513 984 aaKnown RBP12.09□□□□□ -0.47
TRIM28-208ENST00000597172 ALDH1L2Q3SY69 923 aa12.09□□□□□ -0.47
TRIM28-208ENST00000597172 CCDC93Q567U6 631 aa12.09□□□□□ -0.47
TRIM28-208ENST00000597172 STYK1Q6J9G0 422 aa12.09□□□□□ -0.47
TRIM28-208ENST00000597172 VSIG10Q8N0Z9 540 aa12.09□□□□□ -0.47
TRIM28-208ENST00000597172 MRPL50Q8N5N7 158 aaKnown RBP12.09□□□□□ -0.47
TRIM28-208ENST00000597172 NECTIN2Q92692 538 aa12.09□□□□□ -0.47
TRIM28-208ENST00000597172 EPS15P42566 896 aa12.08□□□□□ -0.48
TRIM28-208ENST00000597172 FKBP4Q02790 459 aaKnown RBP eCLIP12.08□□□□□ -0.48
TRIM28-208ENST00000597172 USP50Q70EL3 339 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-208ENST00000597172 CCDC24Q8N4L8 307 aa12.08□□□□□ -0.48
TRIM28-208ENST00000597172 C7orf43Q8WVR3 580 aa12.08□□□□□ -0.48
TRIM28-208ENST00000597172 BCL2L13Q9BXK5 485 aa12.08□□□□□ -0.48
TRIM28-208ENST00000597172 RNF186Q9NXI6 227 aa12.08□□□□□ -0.48
TRIM28-208ENST00000597172 GJA3Q9Y6H8 435 aa12.08□□□□□ -0.48
TRIM28-208ENST00000597172 PITPNM2Q9BZ72 1349 aa12.08□□□□□ -0.48
TRIM28-208ENST00000597172 UBR2Q8IWV8 1755 aa12.07□□□□□ -0.48
TRIM28-208ENST00000597172 HDGFL1Q5TGJ6 251 aa12.07□□□□□ -0.48
TRIM28-208ENST00000597172 CCDC30Q5VVM6 783 aa12.07□□□□□ -0.48
TRIM28-208ENST00000597172 DNAJC10Q8IXB1 793 aa12.07□□□□□ -0.48
TRIM28-208ENST00000597172 ANKRD31Q8N7Z5 1873 aa12.07□□□□□ -0.48
TRIM28-208ENST00000597172 COLQQ9Y215 455 aaPredicted RBP12.07□□□□□ -0.48
TRIM28-208ENST00000597172 PLIN1O60240 522 aa12.06□□□□□ -0.48
TRIM28-208ENST00000597172 SLC4A2P04920 1241 aa12.06□□□□□ -0.48
TRIM28-208ENST00000597172 SRGNP10124 158 aa12.06□□□□□ -0.48
TRIM28-208ENST00000597172 PDIA6Q15084 440 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms