RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 DDX21Q9NR30 783 aaKnown RBP eCLIP13.73□□□□□ -0.21
LIG1-213ENST00000596672 ZNF277Q9NRM2 450 aaPredicted RBP13.73□□□□□ -0.21
LIG1-213ENST00000596672 RIC1Q4ADV7 1423 aa13.73□□□□□ -0.21
LIG1-213ENST00000596672 IBTKQ9P2D0 1353 aaPredicted RBP13.72□□□□□ -0.21
LIG1-213ENST00000596672 KDM2BQ8NHM5 1336 aa13.72□□□□□ -0.21
LIG1-213ENST00000596672 ZC3H4Q9UPT8 1303 aaKnown RBP13.72□□□□□ -0.21
LIG1-213ENST00000596672 DDNO94850 711 aaPredicted RBP13.72□□□□□ -0.21
LIG1-213ENST00000596672 POTEIP0CG38 1075 aa13.72□□□□□ -0.21
LIG1-213ENST00000596672 POTEJP0CG39 1038 aa13.72□□□□□ -0.21
LIG1-213ENST00000596672 HOXA10P31260 410 aaPredicted RBP13.72□□□□□ -0.21
LIG1-213ENST00000596672 NLRP10Q86W26 655 aa13.72□□□□□ -0.21
LIG1-213ENST00000596672 C8orf58Q8NAV2 365 aa13.72□□□□□ -0.21
LIG1-213ENST00000596672 SLC10A5Q5PT55 438 aa13.71□□□□□ -0.21
LIG1-213ENST00000596672 DUSP27Q5VZP5 1158 aa13.71□□□□□ -0.21
LIG1-213ENST00000596672 DDX60Q8IY21 1712 aaKnown RBP13.7□□□□□ -0.22
LIG1-213ENST00000596672 ZNF541Q9H0D2 1346 aa13.7□□□□□ -0.22
LIG1-213ENST00000596672 ELL2O00472 640 aaPredicted RBP13.7□□□□□ -0.22
LIG1-213ENST00000596672 HCLS1P14317 486 aaPredicted RBP13.7□□□□□ -0.22
LIG1-213ENST00000596672 TCIRG1Q13488 830 aa13.7□□□□□ -0.22
LIG1-213ENST00000596672 CCDC93Q567U6 631 aa13.7□□□□□ -0.22
LIG1-213ENST00000596672 TSPYL6Q8N831 410 aa13.7□□□□□ -0.22
LIG1-213ENST00000596672 GTF2E1P29083 439 aaPredicted RBP13.69□□□□□ -0.22
LIG1-213ENST00000596672 FKBP4Q02790 459 aaKnown RBP eCLIP13.69□□□□□ -0.22
LIG1-213ENST00000596672 HDGFL1Q5TGJ6 251 aa13.69□□□□□ -0.22
LIG1-213ENST00000596672 NYXQ9GZU5 481 aa13.69□□□□□ -0.22
LIG1-213ENST00000596672 PHAXQ9H814 394 aaKnown RBP13.69□□□□□ -0.22
LIG1-213ENST00000596672 ZNF316A6NFI3 1004 aaPredicted RBP13.68□□□□□ -0.22
LIG1-213ENST00000596672 TCERG1O14776 1098 aaKnown RBP13.68□□□□□ -0.22
LIG1-213ENST00000596672 VEGFAP15692 232 aaPredicted RBP13.68□□□□□ -0.22
LIG1-213ENST00000596672 PARP10Q53GL7 1025 aa13.68□□□□□ -0.22
LIG1-213ENST00000596672 ISCA1Q9BUE6 129 aa13.68□□□□□ -0.22
LIG1-213ENST00000596672 UTP14AQ9BVJ6 771 aaKnown RBP13.68□□□□□ -0.22
LIG1-213ENST00000596672 IFT57Q9NWB7 429 aa13.68□□□□□ -0.22
LIG1-213ENST00000596672 ATP5J2-PTCD1G3V325 749 aa13.67□□□□□ -0.22
LIG1-213ENST00000596672 HOXB7P09629 217 aa13.67□□□□□ -0.22
LIG1-213ENST00000596672 TSR2Q969E8 191 aaKnown RBP13.67□□□□□ -0.22
LIG1-213ENST00000596672 CRAMP1Q96RY5 1269 aa13.67□□□□□ -0.22
LIG1-213ENST00000596672 LTBP1Q14766 1721 aa13.67□□□□□ -0.22
LIG1-213ENST00000596672 ABCC4O15439 1325 aa13.66□□□□□ -0.22
LIG1-213ENST00000596672 ALDH1B1P30837 517 aa13.66□□□□□ -0.22
LIG1-213ENST00000596672 FSTL1Q12841 308 aa13.66□□□□□ -0.22
LIG1-213ENST00000596672 PLBD2Q8NHP8 589 aa13.66□□□□□ -0.22
LIG1-213ENST00000596672 FZD9O00144 591 aa13.65□□□□□ -0.22
LIG1-213ENST00000596672 IARSP41252 1262 aaKnown RBP13.65□□□□□ -0.22
LIG1-213ENST00000596672 APLP1P51693 650 aa13.65□□□□□ -0.22
LIG1-213ENST00000596672 SOGA3Q5TF21 947 aa13.65□□□□□ -0.22
LIG1-213ENST00000596672 ANKRD13DQ6ZTN6 518 aa13.65□□□□□ -0.22
LIG1-213ENST00000596672 PPP1R42Q7Z4L9 355 aa13.65□□□□□ -0.22
LIG1-213ENST00000596672 PSMD1Q99460 953 aa13.65□□□□□ -0.22
LIG1-213ENST00000596672 DBF4Q9UBU7 674 aaPredicted RBP13.65□□□□□ -0.22
LIG1-213ENST00000596672 ADAMTSL1Q8N6G6 1762 aa13.64□□□□□ -0.23
LIG1-213ENST00000596672 DUOX1Q9NRD9 1551 aa13.64□□□□□ -0.23
LIG1-213ENST00000596672 GNAI1P63096 354 aa13.64□□□□□ -0.23
LIG1-213ENST00000596672 WWC1Q8IX03 1113 aa13.64□□□□□ -0.23
LIG1-213ENST00000596672 RTKN2Q8IZC4 609 aa13.64□□□□□ -0.23
LIG1-213ENST00000596672 JARID2Q92833 1246 aaPredicted RBP13.64□□□□□ -0.23
LIG1-213ENST00000596672 RPGRQ92834 1020 aaKnown RBP13.64□□□□□ -0.23
LIG1-213ENST00000596672 FAM89AQ96GI7 184 aa13.64□□□□□ -0.23
LIG1-213ENST00000596672 L3MBTL3Q96JM7 780 aaPredicted RBP13.64□□□□□ -0.23
LIG1-213ENST00000596672 TRMT112Q9UI30 125 aaKnown RBP13.64□□□□□ -0.23
LIG1-213ENST00000596672 SCN4AP35499 1836 aa13.63□□□□□ -0.23
LIG1-213ENST00000596672 PPEF1O14829 653 aaPredicted RBP13.63□□□□□ -0.23
LIG1-213ENST00000596672 RTL5Q5HYW3 569 aaPredicted RBP13.63□□□□□ -0.23
LIG1-213ENST00000596672 DPY19L2Q6NUT2 758 aa13.63□□□□□ -0.23
LIG1-213ENST00000596672 G2E3Q7L622 706 aa13.63□□□□□ -0.23
LIG1-213ENST00000596672 C16orf71Q8IYS4 520 aaPredicted RBP13.63□□□□□ -0.23
LIG1-213ENST00000596672 SMC1BQ8NDV3 1235 aa13.63□□□□□ -0.23
LIG1-213ENST00000596672 RBM17Q96I25 401 aaKnown RBP13.63□□□□□ -0.23
LIG1-213ENST00000596672 NLRP3Q96P20 1036 aa13.63□□□□□ -0.23
LIG1-213ENST00000596672 SPINK5Q9NQ38 1064 aaPredicted RBP13.63□□□□□ -0.23
LIG1-213ENST00000596672 TRIM28Q13263 835 aaKnown RBP13.62□□□□□ -0.23
LIG1-213ENST00000596672 HSP90AB3PQ58FF7 597 aa13.62□□□□□ -0.23
LIG1-213ENST00000596672 TAF1DQ9H5J8 278 aaPredicted RBP13.62□□□□□ -0.23
LIG1-213ENST00000596672 HYPKQ9NX55 129 aa13.62□□□□□ -0.23
LIG1-213ENST00000596672 ATP6V0A2Q9Y487 856 aa13.62□□□□□ -0.23
LIG1-213ENST00000596672 SH3TC1Q8TE82 1336 aa13.62□□□□□ -0.23
LIG1-213ENST00000596672 LRRC37AA6NMS7 1700 aa13.61□□□□□ -0.23
LIG1-213ENST00000596672 CCDC27Q2M243 656 aa13.61□□□□□ -0.23
LIG1-213ENST00000596672 CELF1Q92879 486 aaKnown RBP13.61□□□□□ -0.23
LIG1-213ENST00000596672 MRS2Q9HD23 443 aa13.61□□□□□ -0.23
LIG1-213ENST00000596672 RTFDC1Q9BY42 306 aaPredicted RBP13.6□□□□□ -0.23
LIG1-213ENST00000596672 RNF123Q5XPI4 1314 aa13.6□□□□□ -0.23
LIG1-213ENST00000596672 ITGBL1O95965 494 aaPredicted RBP13.59□□□□□ -0.23
LIG1-213ENST00000596672 IGKV5-2P06315 115 aa13.59□□□□□ -0.23
LIG1-213ENST00000596672 GRAPQ13588 217 aa13.59□□□□□ -0.23
LIG1-213ENST00000596672 SF3B3Q15393 1217 aaKnown RBP13.59□□□□□ -0.23
LIG1-213ENST00000596672 AOC3Q16853 763 aa13.59□□□□□ -0.23
LIG1-213ENST00000596672 CC2D2BQ6DHV5 1058 aa13.59□□□□□ -0.23
LIG1-213ENST00000596672 SP8Q8IXZ3 490 aa13.59□□□□□ -0.23
LIG1-213ENST00000596672 GRAPLQ8TC17 118 aaPredicted RBP13.59□□□□□ -0.23
LIG1-213ENST00000596672 MYD88Q99836 296 aa13.59□□□□□ -0.23
LIG1-213ENST00000596672 SEC31BQ9NQW1 1179 aa13.59□□□□□ -0.23
LIG1-213ENST00000596672 SALL2Q9Y467 1007 aaPredicted RBP13.59□□□□□ -0.23
LIG1-213ENST00000596672 SCNN1DP51172 638 aa13.58□□□□□ -0.24
LIG1-213ENST00000596672 FMR1Q06787 632 aaKnown RBP eCLIP13.58□□□□□ -0.24
LIG1-213ENST00000596672 CHADLQ6NUI6 762 aa13.58□□□□□ -0.24
LIG1-213ENST00000596672 KLRG1Q96E93 195 aa13.58□□□□□ -0.24
LIG1-213ENST00000596672 PASKQ96RG2 1323 aa13.58□□□□□ -0.24
LIG1-213ENST00000596672 SHTN1A0MZ66 631 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 WTIPA6NIX2 430 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms