RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 KDM2BQ8NHM5 1336 aa22.9■■□□□ 1.26
SHKBP1-204ENST00000594862 HSPA6P17066 643 aa22.9■■□□□ 1.26
SHKBP1-204ENST00000594862 CCDC30Q5VVM6 783 aa22.9■■□□□ 1.26
SHKBP1-204ENST00000594862 ANKRD13DQ6ZTN6 518 aa22.9■■□□□ 1.26
SHKBP1-204ENST00000594862 RPGRQ92834 1020 aaKnown RBP22.9■■□□□ 1.26
SHKBP1-204ENST00000594862 TIAM2Q8IVF5 1701 aa22.89■■□□□ 1.26
SHKBP1-204ENST00000594862 RASSF7Q02833 373 aa22.89■■□□□ 1.25
SHKBP1-204ENST00000594862 GOLGA2Q08379 1002 aa22.89■■□□□ 1.25
SHKBP1-204ENST00000594862 CCDC93Q567U6 631 aa22.89■■□□□ 1.25
SHKBP1-204ENST00000594862 WDR63Q8IWG1 891 aa22.89■■□□□ 1.25
SHKBP1-204ENST00000594862 TAOK3Q9H2K8 898 aa22.89■■□□□ 1.25
SHKBP1-204ENST00000594862 NFKBIEO00221 500 aa22.88■■□□□ 1.25
SHKBP1-204ENST00000594862 KIF3CO14782 793 aa22.88■■□□□ 1.25
SHKBP1-204ENST00000594862 IFFO2Q5TF58 517 aa22.88■■□□□ 1.25
SHKBP1-204ENST00000594862 NLRP10Q86W26 655 aa22.88■■□□□ 1.25
SHKBP1-204ENST00000594862 FAM9BQ8IZU0 186 aa22.88■■□□□ 1.25
SHKBP1-204ENST00000594862 C8orf58Q8NAV2 365 aa22.88■■□□□ 1.25
SHKBP1-204ENST00000594862 HOXA10P31260 410 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-204ENST00000594862 SLC10A5Q5PT55 438 aa22.87■■□□□ 1.25
SHKBP1-204ENST00000594862 NLRP3Q96P20 1036 aa22.87■■□□□ 1.25
SHKBP1-204ENST00000594862 ELL2O00472 640 aaPredicted RBP22.86■■□□□ 1.25
SHKBP1-204ENST00000594862 DDX58O95786 925 aaKnown RBP22.86■■□□□ 1.25
SHKBP1-204ENST00000594862 GRIPAP1Q4V328 841 aa22.86■■□□□ 1.25
SHKBP1-204ENST00000594862 CC2D2BQ6DHV5 1058 aa22.86■■□□□ 1.25
SHKBP1-204ENST00000594862 TSR2Q969E8 191 aaKnown RBP22.86■■□□□ 1.25
SHKBP1-204ENST00000594862 STK31Q9BXU1 1019 aa22.86■■□□□ 1.25
SHKBP1-204ENST00000594862 ZNF219Q9P2Y4 722 aaPredicted RBP22.86■■□□□ 1.25
SHKBP1-204ENST00000594862 SH3TC1Q8TE82 1336 aa22.85■■□□□ 1.25
SHKBP1-204ENST00000594862 DICER1Q9UPY3 1922 aaKnown RBP22.85■■□□□ 1.25
SHKBP1-204ENST00000594862 RTKN2Q8IZC4 609 aa22.85■■□□□ 1.25
SHKBP1-204ENST00000594862 RBM17Q96I25 401 aaKnown RBP22.85■■□□□ 1.25
SHKBP1-204ENST00000594862 CCDC88AQ3V6T2 1871 aa22.84■■□□□ 1.25
SHKBP1-204ENST00000594862 C7orf43Q8WVR3 580 aa22.84■■□□□ 1.25
SHKBP1-204ENST00000594862 CRAMP1Q96RY5 1269 aa22.84■■□□□ 1.25
SHKBP1-204ENST00000594862 TRMT112Q9UI30 125 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-204ENST00000594862 TRIM28Q13263 835 aaKnown RBP22.83■■□□□ 1.25
SHKBP1-204ENST00000594862 TWISTNBQ3B726 338 aaPredicted RBP22.83■■□□□ 1.25
SHKBP1-204ENST00000594862 RIC3Q7Z5B4 369 aa22.83■■□□□ 1.25
SHKBP1-204ENST00000594862 ISCA1Q9BUE6 129 aa22.83■■□□□ 1.25
SHKBP1-204ENST00000594862 FANCIQ9NVI1 1328 aa22.82■■□□□ 1.24
SHKBP1-204ENST00000594862 HSP90B1P14625 803 aaKnown RBP22.82■■□□□ 1.24
SHKBP1-204ENST00000594862 MYH16Q9H6N6 1097 aa22.82■■□□□ 1.24
SHKBP1-204ENST00000594862 FKBP4Q02790 459 aaKnown RBP eCLIP22.81■■□□□ 1.24
SHKBP1-204ENST00000594862 TMX4Q9H1E5 349 aaPredicted RBP22.81■■□□□ 1.24
SHKBP1-204ENST00000594862 TSPYL6Q8N831 410 aa22.8■■□□□ 1.24
SHKBP1-204ENST00000594862 LAMB2P55268 1798 aa22.79■■□□□ 1.24
SHKBP1-204ENST00000594862 DPY19L2Q6NUT2 758 aa22.79■■□□□ 1.24
SHKBP1-204ENST00000594862 PHAXQ9H814 394 aaKnown RBP22.79■■□□□ 1.24
SHKBP1-204ENST00000594862 SALL2Q9Y467 1007 aaPredicted RBP22.79■■□□□ 1.24
SHKBP1-204ENST00000594862 CACNA1FO60840 1977 aa22.79■■□□□ 1.24
SHKBP1-204ENST00000594862 GLTPD2A6NH11 291 aa22.78■■□□□ 1.24
SHKBP1-204ENST00000594862 PPEF1O14829 653 aaPredicted RBP22.78■■□□□ 1.24
SHKBP1-204ENST00000594862 PRELPP51888 382 aa22.78■■□□□ 1.24
SHKBP1-204ENST00000594862 PSMD1Q99460 953 aa22.78■■□□□ 1.24
SHKBP1-204ENST00000594862 TOMM70O94826 608 aa22.77■■□□□ 1.24
SHKBP1-204ENST00000594862 C16orf71Q8IYS4 520 aaPredicted RBP22.77■■□□□ 1.24
SHKBP1-204ENST00000594862 NMRK2Q9NPI5 230 aa22.77■■□□□ 1.24
SHKBP1-204ENST00000594862 DDX60Q8IY21 1712 aaKnown RBP22.77■■□□□ 1.23
SHKBP1-204ENST00000594862 ATP5J2-PTCD1G3V325 749 aa22.76■■□□□ 1.23
SHKBP1-204ENST00000594862 CCER2I3L3R5 266 aa22.76■■□□□ 1.23
SHKBP1-204ENST00000594862 CCDC191Q8NCU4 936 aa22.76■■□□□ 1.23
SHKBP1-204ENST00000594862 SNED1Q8TER0 1413 aa22.75■■□□□ 1.23
SHKBP1-204ENST00000594862 C3orf67Q6ZVT6 689 aa22.75■■□□□ 1.23
SHKBP1-204ENST00000594862 DDX46Q7L014 1031 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-204ENST00000594862 TMC4Q7Z404 712 aa22.75■■□□□ 1.23
SHKBP1-204ENST00000594862 METTL22Q9BUU2 404 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-204ENST00000594862 BBOX1O75936 387 aa22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 HCLS1P14317 486 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 NEXNQ0ZGT2 675 aa22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 KSR2Q6VAB6 950 aa22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 ZBTB38Q8NAP3 1195 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 MYD88Q99836 296 aa22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 ABCC4O15439 1325 aa22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 WDR90Q96KV7 1748 aa22.74■■□□□ 1.23
SHKBP1-204ENST00000594862 CWC25Q9NXE8 425 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-204ENST00000594862 ATP6V0A2Q9Y487 856 aa22.73■■□□□ 1.23
SHKBP1-204ENST00000594862 SLC4A2P04920 1241 aa22.72■■□□□ 1.23
SHKBP1-204ENST00000594862 IARSP41252 1262 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-204ENST00000594862 SF3B3Q15393 1217 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-204ENST00000594862 RBM46Q8TBY0 533 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-204ENST00000594862 FAM89AQ96GI7 184 aa22.72■■□□□ 1.23
SHKBP1-204ENST00000594862 MAP3K2Q9Y2U5 619 aa22.72■■□□□ 1.23
SHKBP1-204ENST00000594862 IRS4O14654 1257 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 VEGFAP15692 232 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 APLP1P51693 650 aa22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 EXOSC9Q06265 439 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 GRAPQ13588 217 aa22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 SYNE4Q8N205 404 aa22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 DNAJC5GQ8N7S2 189 aa22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 GRAPLQ8TC17 118 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 ZNF521Q96K83 1311 aa22.71■■□□□ 1.23
SHKBP1-204ENST00000594862 PI4KAP2A4QPH2 592 aa22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 VAMP4O75379 141 aa22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 PCCAP05165 728 aaPredicted RBP22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 OLFM4Q6UX06 510 aa22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 PI4KAP1Q8N8J0 262 aa22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 SUPT20HQ8NEM7 779 aa22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 JDP2Q8WYK2 163 aa22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 VPS33BQ9H267 617 aa22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 RRAGCQ9HB90 399 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms