RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TTLL6Q8N841 843 aa18.69■□□□□ 0.58
VRK3-206ENST00000594090 CDCA7LQ96GN5 454 aa18.69■□□□□ 0.58
VRK3-206ENST00000594090 ISCA1Q9BUE6 129 aa18.69■□□□□ 0.58
VRK3-206ENST00000594090 UTP14AQ9BVJ6 771 aaKnown RBP18.69■□□□□ 0.58
VRK3-206ENST00000594090 CACNA1SQ13698 1873 aa18.69■□□□□ 0.58
VRK3-206ENST00000594090 RNF123Q5XPI4 1314 aa18.68■□□□□ 0.58
VRK3-206ENST00000594090 G2E3Q7L622 706 aa18.68■□□□□ 0.58
VRK3-206ENST00000594090 ZNF622Q969S3 477 aaKnown RBP eCLIP18.68■□□□□ 0.58
VRK3-206ENST00000594090 ADCY9O60503 1353 aa18.68■□□□□ 0.58
VRK3-206ENST00000594090 ATP5J2-PTCD1G3V325 749 aa18.67■□□□□ 0.58
VRK3-206ENST00000594090 YY1P25490 414 aa18.67■□□□□ 0.58
VRK3-206ENST00000594090 STYK1Q6J9G0 422 aa18.67■□□□□ 0.58
VRK3-206ENST00000594090 FLIIQ13045 1269 aa18.66■□□□□ 0.58
VRK3-206ENST00000594090 MASTLQ96GX5 879 aa18.66■□□□□ 0.58
VRK3-206ENST00000594090 MAP3K2Q9Y2U5 619 aa18.66■□□□□ 0.58
VRK3-206ENST00000594090 TRIM28Q13263 835 aaKnown RBP18.66■□□□□ 0.58
VRK3-206ENST00000594090 KSR2Q6VAB6 950 aa18.66■□□□□ 0.58
VRK3-206ENST00000594090 TRMT2AQ8IZ69 625 aaKnown RBP18.66■□□□□ 0.58
VRK3-206ENST00000594090 MYD88Q99836 296 aa18.66■□□□□ 0.58
VRK3-206ENST00000594090 METTL22Q9BUU2 404 aaPredicted RBP18.66■□□□□ 0.58
VRK3-206ENST00000594090 TRMT112Q9UI30 125 aaKnown RBP18.66■□□□□ 0.58
VRK3-206ENST00000594090 LAMB2P55268 1798 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 DDX60Q8IY21 1712 aaKnown RBP18.65■□□□□ 0.58
VRK3-206ENST00000594090 SLX4Q8IY92 1834 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 PI4KAP2A4QPH2 592 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 NPR1P16066 1061 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 HNRNPUQ00839 825 aaKnown RBP eCLIP18.65■□□□□ 0.58
VRK3-206ENST00000594090 CRY2Q49AN0 593 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 PI4KAP1Q8N8J0 262 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 CNKSR1Q969H4 720 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 ZNF428Q96B54 188 aa18.65■□□□□ 0.58
VRK3-206ENST00000594090 SH3TC1Q8TE82 1336 aa18.64■□□□□ 0.57
VRK3-206ENST00000594090 SLC10A5Q5PT55 438 aa18.64■□□□□ 0.57
VRK3-206ENST00000594090 ARHGAP27Q6ZUM4 889 aa18.64■□□□□ 0.57
VRK3-206ENST00000594090 SYNE4Q8N205 404 aa18.64■□□□□ 0.57
VRK3-206ENST00000594090 FKBP5Q13451 457 aaPredicted RBP18.63■□□□□ 0.57
VRK3-206ENST00000594090 PRPF40BQ6NWY9 871 aaKnown RBP18.63■□□□□ 0.57
VRK3-206ENST00000594090 C3orf67Q6ZVT6 689 aa18.62■□□□□ 0.57
VRK3-206ENST00000594090 CCDC191Q8NCU4 936 aa18.62■□□□□ 0.57
VRK3-206ENST00000594090 HCLS1P14317 486 aaPredicted RBP18.61■□□□□ 0.57
VRK3-206ENST00000594090 RPGRQ92834 1020 aaKnown RBP18.61■□□□□ 0.57
VRK3-206ENST00000594090 NLRP3Q96P20 1036 aa18.61■□□□□ 0.57
VRK3-206ENST00000594090 C21orf2O43822 256 aa18.6■□□□□ 0.57
VRK3-206ENST00000594090 IGKV5-2P06315 115 aa18.6■□□□□ 0.57
VRK3-206ENST00000594090 NEXNQ0ZGT2 675 aa18.6■□□□□ 0.57
VRK3-206ENST00000594090 ZBTB38Q8NAP3 1195 aaPredicted RBP18.6■□□□□ 0.57
VRK3-206ENST00000594090 FAM89AQ96GI7 184 aa18.6■□□□□ 0.57
VRK3-206ENST00000594090 CWC25Q9NXE8 425 aaPredicted RBP18.6■□□□□ 0.57
VRK3-206ENST00000594090 FER1L6Q2WGJ9 1857 aa18.59■□□□□ 0.57
VRK3-206ENST00000594090 ALDH1B1P30837 517 aa18.59■□□□□ 0.57
VRK3-206ENST00000594090 HOXA10P31260 410 aaPredicted RBP18.58■□□□□ 0.57
VRK3-206ENST00000594090 RTL5Q5HYW3 569 aaPredicted RBP18.58■□□□□ 0.57
VRK3-206ENST00000594090 DNAAF4Q8WXU2 420 aa18.58■□□□□ 0.57
VRK3-206ENST00000594090 ZNF219Q9P2Y4 722 aaPredicted RBP18.58■□□□□ 0.57
VRK3-206ENST00000594090 SBF1O95248 1867 aa18.58■□□□□ 0.56
VRK3-206ENST00000594090 NEURL1BA8MQ27 555 aa18.57■□□□□ 0.56
VRK3-206ENST00000594090 CT47B1P0C2W7 299 aaPredicted RBP18.57■□□□□ 0.56
VRK3-206ENST00000594090 RASSF7Q02833 373 aa18.57■□□□□ 0.56
VRK3-206ENST00000594090 CWF19L2Q2TBE0 894 aaKnown RBP18.57■□□□□ 0.56
VRK3-206ENST00000594090 RBM17Q96I25 401 aaKnown RBP18.57■□□□□ 0.56
VRK3-206ENST00000594090 F6X3S4 739 aa18.57■□□□□ 0.56
VRK3-206ENST00000594090 IRS4O14654 1257 aaPredicted RBP18.57■□□□□ 0.56
VRK3-206ENST00000594090 PCCAP05165 728 aaPredicted RBP18.57■□□□□ 0.56
VRK3-206ENST00000594090 SOGA3Q5TF21 947 aa18.57■□□□□ 0.56
VRK3-206ENST00000594090 MRPL50Q8N5N7 158 aaKnown RBP18.57■□□□□ 0.56
VRK3-206ENST00000594090 SSH1Q8WYL5 1049 aa18.57■□□□□ 0.56
VRK3-206ENST00000594090 CRAMP1Q96RY5 1269 aa18.57■□□□□ 0.56
VRK3-206ENST00000594090 ZBED9Q6R2W3 1325 aa18.56■□□□□ 0.56
VRK3-206ENST00000594090 NFKBIEO00221 500 aa18.56■□□□□ 0.56
VRK3-206ENST00000594090 ALDH1L2Q3SY69 923 aa18.56■□□□□ 0.56
VRK3-206ENST00000594090 C7orf43Q8WVR3 580 aa18.56■□□□□ 0.56
VRK3-206ENST00000594090 BCL2L13Q9BXK5 485 aa18.55■□□□□ 0.56
VRK3-206ENST00000594090 ABCC4O15439 1325 aa18.55■□□□□ 0.56
VRK3-206ENST00000594090 HSP90B1P14625 803 aaKnown RBP18.54■□□□□ 0.56
VRK3-206ENST00000594090 SF3B3Q15393 1217 aaKnown RBP18.54■□□□□ 0.56
VRK3-206ENST00000594090 CCDC93Q567U6 631 aa18.54■□□□□ 0.56
VRK3-206ENST00000594090 C9orf131Q5VYM1 1079 aa18.54■□□□□ 0.56
VRK3-206ENST00000594090 LINS1Q8NG48 757 aa18.54■□□□□ 0.56
VRK3-206ENST00000594090 JARID2Q92833 1246 aaPredicted RBP18.54■□□□□ 0.56
VRK3-206ENST00000594090 CDHR2Q9BYE9 1310 aa18.54■□□□□ 0.56
VRK3-206ENST00000594090 SNED1Q8TER0 1413 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 PPEF1O14829 653 aaPredicted RBP18.53■□□□□ 0.56
VRK3-206ENST00000594090 GCKRQ14397 625 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 OLFM4Q6UX06 510 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 ZNF784Q8NCA9 323 aaPredicted RBP18.53■□□□□ 0.56
VRK3-206ENST00000594090 SMC4Q9NTJ3 1288 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 RNF181Q9P0P0 153 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 PTPRCP08575 1304 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 LTBP3Q9NS15 1303 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 CCDC88AQ3V6T2 1871 aa18.53■□□□□ 0.56
VRK3-206ENST00000594090 TIAM2Q8IVF5 1701 aa18.52■□□□□ 0.56
VRK3-206ENST00000594090 LMNB1P20700 586 aa18.52■□□□□ 0.56
VRK3-206ENST00000594090 PRELPP51888 382 aa18.52■□□□□ 0.56
VRK3-206ENST00000594090 BEND3Q5T5X7 828 aa18.52■□□□□ 0.56
VRK3-206ENST00000594090 DDX46Q7L014 1031 aaKnown RBP18.52■□□□□ 0.56
VRK3-206ENST00000594090 TAOK3Q9H2K8 898 aa18.52■□□□□ 0.56
VRK3-206ENST00000594090 TAF1P21675 1872 aa18.52■□□□□ 0.56
VRK3-206ENST00000594090 MYH3P11055 1940 aa18.52■□□□□ 0.56
VRK3-206ENST00000594090 PDE8AO60658 829 aa18.51■□□□□ 0.55
VRK3-206ENST00000594090 UBE3BQ7Z3V4 1068 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms