RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 SRGAP3O43295 1099 aa16.42■□□□□ 0.22
VRK3-205ENST00000593919 MTX1Q13505 466 aa16.42■□□□□ 0.22
VRK3-205ENST00000593919 CHD1LQ86WJ1 897 aa16.42■□□□□ 0.22
VRK3-205ENST00000593919 LNPKQ9C0E8 428 aa16.42■□□□□ 0.22
VRK3-205ENST00000593919 CASP7P55210 303 aa16.42■□□□□ 0.22
VRK3-205ENST00000593919 TRIM28Q13263 835 aaKnown RBP16.42■□□□□ 0.22
VRK3-205ENST00000593919 POLA2Q14181 598 aa16.42■□□□□ 0.22
VRK3-205ENST00000593919 HSP90AB3PQ58FF7 597 aa16.41■□□□□ 0.22
VRK3-205ENST00000593919 RC3H1Q5TC82 1133 aaKnown RBP16.41■□□□□ 0.22
VRK3-205ENST00000593919 LRRC4BQ9NT99 713 aa16.41■□□□□ 0.22
VRK3-205ENST00000593919 H7C1W4 665 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 ZBTB22O15209 634 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 RTL5Q5HYW3 569 aaPredicted RBP16.4■□□□□ 0.22
VRK3-205ENST00000593919 EPHA10Q5JZY3 1008 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 EXOC6BQ9Y2D4 811 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 SCN7AQ01118 1682 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 CAMTA2O94983 1202 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 GPTP24298 496 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 C4AP0C0L4 1744 aa16.4■□□□□ 0.22
VRK3-205ENST00000593919 TNS1Q9HBL0 1735 aaKnown RBP16.4■□□□□ 0.22
VRK3-205ENST00000593919 UBR3Q6ZT12 1888 aa16.39■□□□□ 0.21
VRK3-205ENST00000593919 APBB1O00213 710 aa16.39■□□□□ 0.21
VRK3-205ENST00000593919 GNPATO15228 680 aa16.39■□□□□ 0.21
VRK3-205ENST00000593919 MYH3P11055 1940 aa16.39■□□□□ 0.21
VRK3-205ENST00000593919 SMIM5Q71RC9 77 aa16.38■□□□□ 0.21
VRK3-205ENST00000593919 NLRP10Q86W26 655 aa16.38■□□□□ 0.21
VRK3-205ENST00000593919 RPS6KA4O75676 772 aa16.38■□□□□ 0.21
VRK3-205ENST00000593919 UBN2Q6ZU65 1347 aa16.38■□□□□ 0.21
VRK3-205ENST00000593919 SLC27A3Q5K4L6 730 aa16.37■□□□□ 0.21
VRK3-205ENST00000593919 AMIGO3Q86WK7 504 aa16.37■□□□□ 0.21
VRK3-205ENST00000593919 RABL6Q3YEC7 729 aaPredicted RBP16.37■□□□□ 0.21
VRK3-205ENST00000593919 ZNF34Q8IZ26 560 aa16.37■□□□□ 0.21
VRK3-205ENST00000593919 RTCBQ9Y3I0 505 aaKnown RBP16.37■□□□□ 0.21
VRK3-205ENST00000593919 SMARCA5O60264 1052 aaPredicted RBP16.36■□□□□ 0.21
VRK3-205ENST00000593919 SURF6O75683 361 aaKnown RBP16.36■□□□□ 0.21
VRK3-205ENST00000593919 PCCAP05165 728 aaPredicted RBP16.36■□□□□ 0.21
VRK3-205ENST00000593919 ZBTB38Q8NAP3 1195 aaPredicted RBP16.36■□□□□ 0.21
VRK3-205ENST00000593919 FAM89AQ96GI7 184 aa16.36■□□□□ 0.21
VRK3-205ENST00000593919 AK7Q96M32 723 aa16.35■□□□□ 0.21
VRK3-205ENST00000593919 FOXO4P98177 505 aa16.35■□□□□ 0.21
VRK3-205ENST00000593919 PROM2Q8N271 834 aa16.35■□□□□ 0.21
VRK3-205ENST00000593919 DDRGK1Q96HY6 314 aa16.35■□□□□ 0.21
VRK3-205ENST00000593919 LRRCC1Q9C099 1032 aa16.35■□□□□ 0.21
VRK3-205ENST00000593919 PA2G4Q9UQ80 394 aaKnown RBP16.35■□□□□ 0.21
VRK3-205ENST00000593919 ZNF652Q9Y2D9 606 aa16.35■□□□□ 0.21
VRK3-205ENST00000593919 APBA3O96018 575 aa16.34■□□□□ 0.21
VRK3-205ENST00000593919 TXNRD1Q16881 649 aa16.34■□□□□ 0.21
VRK3-205ENST00000593919 CLEC4GQ6UXB4 293 aa16.34■□□□□ 0.21
VRK3-205ENST00000593919 RGPD3A6NKT7 1758 aaPredicted RBP16.34■□□□□ 0.21
VRK3-205ENST00000593919 RGPD4Q7Z3J3 1758 aa16.34■□□□□ 0.21
VRK3-205ENST00000593919 PLSCR1O15162 318 aa16.33■□□□□ 0.21
VRK3-205ENST00000593919 LMBR1LQ6UX01 489 aa16.33■□□□□ 0.21
VRK3-205ENST00000593919 SYNE4Q8N205 404 aa16.33■□□□□ 0.21
VRK3-205ENST00000593919 NARFQ9UHQ1 456 aa16.33■□□□□ 0.21
VRK3-205ENST00000593919 TRMT112Q9UI30 125 aaKnown RBP16.33■□□□□ 0.21
VRK3-205ENST00000593919 NIP7Q9Y221 180 aaKnown RBP eCLIP16.33■□□□□ 0.21
VRK3-205ENST00000593919 CDHR2Q9BYE9 1310 aa16.33■□□□□ 0.2
VRK3-205ENST00000593919 C16orf71Q8IYS4 520 aaPredicted RBP16.33■□□□□ 0.2
VRK3-205ENST00000593919 RAB11FIP3O75154 756 aa16.32■□□□□ 0.2
VRK3-205ENST00000593919 PHF14O94880 888 aa16.32■□□□□ 0.2
VRK3-205ENST00000593919 HSP90AB4PQ58FF6 505 aa16.32■□□□□ 0.2
VRK3-205ENST00000593919 USPL1Q5W0Q7 1092 aa16.32■□□□□ 0.2
VRK3-205ENST00000593919 KLHDC4Q8TBB5 520 aa16.32■□□□□ 0.2
VRK3-205ENST00000593919 ARHGEF1Q92888 912 aaKnown RBP16.32■□□□□ 0.2
VRK3-205ENST00000593919 SRP68Q9UHB9 627 aaKnown RBP16.32■□□□□ 0.2
VRK3-205ENST00000593919 DDX60Q8IY21 1712 aaKnown RBP16.31■□□□□ 0.2
VRK3-205ENST00000593919 LAMB2P55268 1798 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 RFX5P48382 616 aaPredicted RBP16.31■□□□□ 0.2
VRK3-205ENST00000593919 NBR1Q14596 966 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 PARP10Q53GL7 1025 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 SUSD4Q5VX71 490 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 OTUD7AQ8TE49 926 aaPredicted RBP16.31■□□□□ 0.2
VRK3-205ENST00000593919 PLA2G12BQ9BX93 195 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 BCL2L12Q9HB09 334 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 CHMP3Q9Y3E7 222 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 RGL2O15211 777 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 ZPR1O75312 459 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 OS9Q13438 667 aaPredicted RBP16.31■□□□□ 0.2
VRK3-205ENST00000593919 PLEKHM2Q8IWE5 1019 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 RHPN1Q8TCX5 695 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 KIF1BPQ96EK5 621 aa16.31■□□□□ 0.2
VRK3-205ENST00000593919 COL24A1Q17RW2 1714 aa16.3■□□□□ 0.2
VRK3-205ENST00000593919 TUBGCP6Q96RT7 1819 aa16.3■□□□□ 0.2
VRK3-205ENST00000593919 PTPN12Q05209 780 aaKnown RBP16.3■□□□□ 0.2
VRK3-205ENST00000593919 TRAPPC3LQ5T215 181 aa16.3■□□□□ 0.2
VRK3-205ENST00000593919 SIL1Q9H173 461 aa16.3■□□□□ 0.2
VRK3-205ENST00000593919 IL1RAPL2Q9NP60 686 aa16.3■□□□□ 0.2
VRK3-205ENST00000593919 CASZ1Q86V15 1759 aa16.3■□□□□ 0.2
VRK3-205ENST00000593919 USP42Q9H9J4 1324 aaKnown RBP16.29■□□□□ 0.2
VRK3-205ENST00000593919 FAM177BA6PVY3 158 aa16.29■□□□□ 0.2
VRK3-205ENST00000593919 IRS4O14654 1257 aaPredicted RBP16.29■□□□□ 0.2
VRK3-205ENST00000593919 UTP14AQ9BVJ6 771 aaKnown RBP16.29■□□□□ 0.2
VRK3-205ENST00000593919 COPRSQ9NQ92 184 aa16.29■□□□□ 0.2
VRK3-205ENST00000593919 SH3TC1Q8TE82 1336 aa16.29■□□□□ 0.2
VRK3-205ENST00000593919 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.29■□□□□ 0.2
VRK3-205ENST00000593919 NTSR2O95665 410 aa16.29■□□□□ 0.2
VRK3-205ENST00000593919 RFC4P35249 363 aa16.29■□□□□ 0.2
VRK3-205ENST00000593919 TBC1D9BQ66K14 1250 aa16.29■□□□□ 0.2
VRK3-205ENST00000593919 G3BP1Q13283 466 aaKnown RBP eCLIP16.28■□□□□ 0.2
VRK3-205ENST00000593919 ERC1Q8IUD2 1116 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms