RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 PARP10Q53GL7 1025 aa18■□□□□ 0.47
CLIP3-205ENST00000592017 SOGA3Q5TF21 947 aa18■□□□□ 0.47
CLIP3-205ENST00000592017 IL16Q14005 1332 aa17.99■□□□□ 0.47
CLIP3-205ENST00000592017 ALDH1B1P30837 517 aa17.99■□□□□ 0.47
CLIP3-205ENST00000592017 HOXA10P31260 410 aaPredicted RBP17.99■□□□□ 0.47
CLIP3-205ENST00000592017 UTP14AQ9BVJ6 771 aaKnown RBP17.99■□□□□ 0.47
CLIP3-205ENST00000592017 DBF4Q9UBU7 674 aaPredicted RBP17.99■□□□□ 0.47
CLIP3-205ENST00000592017 SLX4Q8IY92 1834 aa17.99■□□□□ 0.47
CLIP3-205ENST00000592017 TCIRG1Q13488 830 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 CCDC93Q567U6 631 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 SLC10A5Q5PT55 438 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 PPP1R42Q7Z4L9 355 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 NLRP10Q86W26 655 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 WDR63Q8IWG1 891 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 TSPYL6Q8N831 410 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 FANCIQ9NVI1 1328 aa17.98■□□□□ 0.47
CLIP3-205ENST00000592017 HSP90AB3PQ58FF7 597 aa17.97■□□□□ 0.47
CLIP3-205ENST00000592017 SYNE4Q8N205 404 aa17.97■□□□□ 0.47
CLIP3-205ENST00000592017 RBM46Q8TBY0 533 aaKnown RBP17.97■□□□□ 0.47
CLIP3-205ENST00000592017 SBF1O95248 1867 aa17.97■□□□□ 0.47
CLIP3-205ENST00000592017 SLC51AQ86UW1 340 aa17.96■□□□□ 0.47
CLIP3-205ENST00000592017 ZNF277Q9NRM2 450 aaPredicted RBP17.96■□□□□ 0.47
CLIP3-205ENST00000592017 RIC1Q4ADV7 1423 aa17.96■□□□□ 0.47
CLIP3-205ENST00000592017 POTECB2RU33 542 aa17.95■□□□□ 0.46
CLIP3-205ENST00000592017 FKBP4Q02790 459 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLIP3-205ENST00000592017 TWISTNBQ3B726 338 aaPredicted RBP17.95■□□□□ 0.46
CLIP3-205ENST00000592017 ANKRD13DQ6ZTN6 518 aa17.95■□□□□ 0.46
CLIP3-205ENST00000592017 C16orf71Q8IYS4 520 aaPredicted RBP17.95■□□□□ 0.46
CLIP3-205ENST00000592017 RTKN2Q8IZC4 609 aa17.95■□□□□ 0.46
CLIP3-205ENST00000592017 PLBD2Q8NHP8 589 aa17.95■□□□□ 0.46
CLIP3-205ENST00000592017 RPGRQ92834 1020 aaKnown RBP17.95■□□□□ 0.46
CLIP3-205ENST00000592017 HYPKQ9NX55 129 aa17.95■□□□□ 0.46
CLIP3-205ENST00000592017 TNRC6CQ9HCJ0 1690 aaKnown RBP17.94■□□□□ 0.46
CLIP3-205ENST00000592017 TCERG1O14776 1098 aaKnown RBP17.94■□□□□ 0.46
CLIP3-205ENST00000592017 VEGFAP15692 232 aaPredicted RBP17.94■□□□□ 0.46
CLIP3-205ENST00000592017 CCDC30Q5VVM6 783 aa17.94■□□□□ 0.46
CLIP3-205ENST00000592017 MIER1Q8N108 512 aa17.94■□□□□ 0.46
CLIP3-205ENST00000592017 ZNF428Q96B54 188 aa17.94■□□□□ 0.46
CLIP3-205ENST00000592017 NLRP3Q96P20 1036 aa17.94■□□□□ 0.46
CLIP3-205ENST00000592017 CRAMP1Q96RY5 1269 aa17.94■□□□□ 0.46
CLIP3-205ENST00000592017 NUP98P52948 1817 aa17.93■□□□□ 0.46
CLIP3-205ENST00000592017 HCLS1P14317 486 aaPredicted RBP17.93■□□□□ 0.46
CLIP3-205ENST00000592017 GOLGA2Q08379 1002 aa17.93■□□□□ 0.46
CLIP3-205ENST00000592017 DPY19L2Q6NUT2 758 aa17.93■□□□□ 0.46
CLIP3-205ENST00000592017 RBM17Q96I25 401 aaKnown RBP17.93■□□□□ 0.46
CLIP3-205ENST00000592017 ISCA1Q9BUE6 129 aa17.93■□□□□ 0.46
CLIP3-205ENST00000592017 SPINK5Q9NQ38 1064 aaPredicted RBP17.93■□□□□ 0.46
CLIP3-205ENST00000592017 TRMT112Q9UI30 125 aaKnown RBP17.93■□□□□ 0.46
CLIP3-205ENST00000592017 SNED1Q8TER0 1413 aa17.92■□□□□ 0.46
CLIP3-205ENST00000592017 ATP5J2-PTCD1G3V325 749 aa17.92■□□□□ 0.46
CLIP3-205ENST00000592017 DDNO94850 711 aaPredicted RBP17.92■□□□□ 0.46
CLIP3-205ENST00000592017 CHMP4AQ9BY43 222 aa17.92■□□□□ 0.46
CLIP3-205ENST00000592017 MYH16Q9H6N6 1097 aa17.92■□□□□ 0.46
CLIP3-205ENST00000592017 PHAXQ9H814 394 aaKnown RBP17.92■□□□□ 0.46
CLIP3-205ENST00000592017 FER1L6Q2WGJ9 1857 aa17.91■□□□□ 0.46
CLIP3-205ENST00000592017 EXOSC9Q06265 439 aaKnown RBP17.91■□□□□ 0.46
CLIP3-205ENST00000592017 FSTL1Q12841 308 aa17.91■□□□□ 0.46
CLIP3-205ENST00000592017 CC2D2BQ6DHV5 1058 aa17.91■□□□□ 0.46
CLIP3-205ENST00000592017 STK31Q9BXU1 1019 aa17.91■□□□□ 0.46
CLIP3-205ENST00000592017 RNF123Q5XPI4 1314 aa17.91■□□□□ 0.46
CLIP3-205ENST00000592017 PSMD1Q99460 953 aa17.9■□□□□ 0.46
CLIP3-205ENST00000592017 SH3TC1Q8TE82 1336 aa17.9■□□□□ 0.46
CLIP3-205ENST00000592017 ZNF521Q96K83 1311 aa17.9■□□□□ 0.46
CLIP3-205ENST00000592017 PPEF1O14829 653 aaPredicted RBP17.89■□□□□ 0.45
CLIP3-205ENST00000592017 IARSP41252 1262 aaKnown RBP17.89■□□□□ 0.45
CLIP3-205ENST00000592017 APLP1P51693 650 aa17.89■□□□□ 0.45
CLIP3-205ENST00000592017 TRIM28Q13263 835 aaKnown RBP17.89■□□□□ 0.45
CLIP3-205ENST00000592017 RIC3Q7Z5B4 369 aa17.89■□□□□ 0.45
CLIP3-205ENST00000592017 ABCC4O15439 1325 aa17.89■□□□□ 0.45
CLIP3-205ENST00000592017 SMC1BQ8NDV3 1235 aa17.88■□□□□ 0.45
CLIP3-205ENST00000592017 FAM89AQ96GI7 184 aa17.88■□□□□ 0.45
CLIP3-205ENST00000592017 ZNF541Q9H0D2 1346 aa17.88■□□□□ 0.45
CLIP3-205ENST00000592017 ARFGEF2Q9Y6D5 1785 aa17.87■□□□□ 0.45
CLIP3-205ENST00000592017 DDX58O95786 925 aaKnown RBP17.87■□□□□ 0.45
CLIP3-205ENST00000592017 ATP6V0A2Q9Y487 856 aa17.87■□□□□ 0.45
CLIP3-205ENST00000592017 FZD9O00144 591 aa17.86■□□□□ 0.45
CLIP3-205ENST00000592017 BBOX1O75936 387 aa17.86■□□□□ 0.45
CLIP3-205ENST00000592017 HTRA3P83110 453 aa17.86■□□□□ 0.45
CLIP3-205ENST00000592017 DNAJC5GQ8N7S2 189 aa17.86■□□□□ 0.45
CLIP3-205ENST00000592017 VAMP4O75379 141 aa17.85■□□□□ 0.45
CLIP3-205ENST00000592017 SLC4A2P04920 1241 aa17.85■□□□□ 0.45
CLIP3-205ENST00000592017 GRIPAP1Q4V328 841 aa17.85■□□□□ 0.45
CLIP3-205ENST00000592017 RTL5Q5HYW3 569 aaPredicted RBP17.85■□□□□ 0.45
CLIP3-205ENST00000592017 ANKRD36CQ5JPF3 1778 aa17.85■□□□□ 0.45
CLIP3-205ENST00000592017 TIAM2Q8IVF5 1701 aa17.85■□□□□ 0.45
CLIP3-205ENST00000592017 L3MBTL3Q96JM7 780 aaPredicted RBP17.85■□□□□ 0.45
CLIP3-205ENST00000592017 MYD88Q99836 296 aa17.85■□□□□ 0.45
CLIP3-205ENST00000592017 DDX46Q7L014 1031 aaKnown RBP17.84■□□□□ 0.45
CLIP3-205ENST00000592017 G2E3Q7L622 706 aa17.84■□□□□ 0.45
CLIP3-205ENST00000592017 CACNA1SQ13698 1873 aa17.84■□□□□ 0.45
CLIP3-205ENST00000592017 E9PSI1 815 aa17.83■□□□□ 0.44
CLIP3-205ENST00000592017 POTEIP0CG38 1075 aa17.83■□□□□ 0.44
CLIP3-205ENST00000592017 POTEJP0CG39 1038 aa17.83■□□□□ 0.44
CLIP3-205ENST00000592017 GRAPQ13588 217 aa17.83■□□□□ 0.44
CLIP3-205ENST00000592017 SF3B3Q15393 1217 aaKnown RBP17.83■□□□□ 0.44
CLIP3-205ENST00000592017 SP8Q8IXZ3 490 aa17.83■□□□□ 0.44
CLIP3-205ENST00000592017 GRAPLQ8TC17 118 aaPredicted RBP17.83■□□□□ 0.44
CLIP3-205ENST00000592017 MAP3K2Q9Y2U5 619 aa17.83■□□□□ 0.44
CLIP3-205ENST00000592017 CCDC88AQ3V6T2 1871 aa17.83■□□□□ 0.44
CLIP3-205ENST00000592017 WDR90Q96KV7 1748 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms