RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 LMOD1P29536 600 aaPredicted RBP23.15■■□□□ 1.3
RETREG3-210ENST00000590541 DCTN1Q14203 1278 aa23.15■■□□□ 1.3
RETREG3-210ENST00000590541 CC2D2BQ6DHV5 1058 aa23.15■■□□□ 1.3
RETREG3-210ENST00000590541 CYP4F22Q6NT55 531 aa23.15■■□□□ 1.3
RETREG3-210ENST00000590541 RTF1Q92541 710 aaKnown RBP23.15■■□□□ 1.3
RETREG3-210ENST00000590541 CST9Q5W186 159 aa23.14■■□□□ 1.29
RETREG3-210ENST00000590541 SLC51AQ86UW1 340 aa23.14■■□□□ 1.29
RETREG3-210ENST00000590541 ECE1P42892 770 aa23.13■■□□□ 1.29
RETREG3-210ENST00000590541 PAXIP1Q6ZW49 1069 aaPredicted RBP23.13■■□□□ 1.29
RETREG3-210ENST00000590541 GPR101Q96P66 508 aaPredicted RBP23.13■■□□□ 1.29
RETREG3-210ENST00000590541 NYXQ9GZU5 481 aa23.13■■□□□ 1.29
RETREG3-210ENST00000590541 TRAF5O00463 557 aa23.12■■□□□ 1.29
RETREG3-210ENST00000590541 HOXA10P31260 410 aaPredicted RBP23.12■■□□□ 1.29
RETREG3-210ENST00000590541 GRM1Q13255 1194 aa23.12■■□□□ 1.29
RETREG3-210ENST00000590541 USP50Q70EL3 339 aaPredicted RBP23.12■■□□□ 1.29
RETREG3-210ENST00000590541 LARGE2Q8N3Y3 721 aa23.12■■□□□ 1.29
RETREG3-210ENST00000590541 TLL2Q9Y6L7 1015 aa23.12■■□□□ 1.29
RETREG3-210ENST00000590541 CCDC85CA6NKD9 419 aa23.11■■□□□ 1.29
RETREG3-210ENST00000590541 RGS19P49795 217 aa23.11■■□□□ 1.29
RETREG3-210ENST00000590541 BEGAINQ9BUH8 593 aa23.11■■□□□ 1.29
RETREG3-210ENST00000590541 LAMB4A4D0S4 1761 aa23.11■■□□□ 1.29
RETREG3-210ENST00000590541 RIC1Q4ADV7 1423 aa23.1■■□□□ 1.29
RETREG3-210ENST00000590541 ERVV-1B6SEH8 477 aa23.1■■□□□ 1.29
RETREG3-210ENST00000590541 NGEFQ8N5V2 710 aa23.1■■□□□ 1.29
RETREG3-210ENST00000590541 RPGRQ92834 1020 aaKnown RBP23.1■■□□□ 1.29
RETREG3-210ENST00000590541 CFAP53Q96M91 514 aa23.1■■□□□ 1.29
RETREG3-210ENST00000590541 TRPM7Q96QT4 1865 aa23.1■■□□□ 1.29
RETREG3-210ENST00000590541 NUP98P52948 1817 aa23.1■■□□□ 1.29
RETREG3-210ENST00000590541 HTATSF1O43719 755 aaKnown RBP23.09■■□□□ 1.29
RETREG3-210ENST00000590541 U2AF1L5P0DN76 240 aaPredicted RBP23.09■■□□□ 1.29
RETREG3-210ENST00000590541 U2AF1Q01081 240 aaKnown RBP eCLIP23.09■■□□□ 1.29
RETREG3-210ENST00000590541 MLLT1Q03111 559 aaPredicted RBP23.09■■□□□ 1.29
RETREG3-210ENST00000590541 TAF7Q15545 349 aaPredicted RBP23.09■■□□□ 1.29
RETREG3-210ENST00000590541 GRIPAP1Q4V328 841 aa23.09■■□□□ 1.29
RETREG3-210ENST00000590541 MIS18AQ9NYP9 233 aa23.09■■□□□ 1.29
RETREG3-210ENST00000590541 TSKSQ9UJT2 592 aa23.09■■□□□ 1.29
RETREG3-210ENST00000590541 NUDCQ9Y266 331 aa23.09■■□□□ 1.29
RETREG3-210ENST00000590541 MAP3K15Q6ZN16 1313 aa23.08■■□□□ 1.29
RETREG3-210ENST00000590541 UBN2Q6ZU65 1347 aa23.08■■□□□ 1.29
RETREG3-210ENST00000590541 AOC2O75106 756 aa23.08■■□□□ 1.29
RETREG3-210ENST00000590541 IBTKQ9P2D0 1353 aaPredicted RBP23.07■■□□□ 1.28
RETREG3-210ENST00000590541 PPEF1O14829 653 aaPredicted RBP23.07■■□□□ 1.28
RETREG3-210ENST00000590541 SUSD4Q5VX71 490 aa23.07■■□□□ 1.28
RETREG3-210ENST00000590541 TTLL7Q6ZT98 887 aa23.07■■□□□ 1.28
RETREG3-210ENST00000590541 NIM1KQ8IY84 436 aa23.07■■□□□ 1.28
RETREG3-210ENST00000590541 CRAMP1Q96RY5 1269 aa23.07■■□□□ 1.28
RETREG3-210ENST00000590541 TCERG1O14776 1098 aaKnown RBP23.06■■□□□ 1.28
RETREG3-210ENST00000590541 GPTP24298 496 aa23.06■■□□□ 1.28
RETREG3-210ENST00000590541 MAP2K2P36507 400 aa23.06■■□□□ 1.28
RETREG3-210ENST00000590541 RBM17Q96I25 401 aaKnown RBP23.06■■□□□ 1.28
RETREG3-210ENST00000590541 C3orf67Q6ZVT6 689 aa23.05■■□□□ 1.28
RETREG3-210ENST00000590541 ADARB2Q9NS39 739 aaKnown RBP23.05■■□□□ 1.28
RETREG3-210ENST00000590541 GPRC5DQ9NZD1 345 aa23.05■■□□□ 1.28
RETREG3-210ENST00000590541 PPIP5K2O43314 1243 aa23.04■■□□□ 1.28
RETREG3-210ENST00000590541 AOC3Q16853 763 aa23.04■■□□□ 1.28
RETREG3-210ENST00000590541 SAPCD2Q86UD0 394 aa23.04■■□□□ 1.28
RETREG3-210ENST00000590541 RRP7AQ9Y3A4 280 aaKnown RBP23.04■■□□□ 1.28
RETREG3-210ENST00000590541 NTSR2O95665 410 aa23.03■■□□□ 1.28
RETREG3-210ENST00000590541 KIF6Q6ZMV9 814 aa23.03■■□□□ 1.28
RETREG3-210ENST00000590541 ZNF34Q8IZ26 560 aa23.03■■□□□ 1.28
RETREG3-210ENST00000590541 ZBTB3Q9H5J0 574 aa23.03■■□□□ 1.28
RETREG3-210ENST00000590541 KDM3BQ7LBC6 1761 aa23.02■■□□□ 1.28
RETREG3-210ENST00000590541 CELF2O95319 508 aaKnown RBP23.02■■□□□ 1.28
RETREG3-210ENST00000590541 CXCL9Q07325 125 aa23.02■■□□□ 1.28
RETREG3-210ENST00000590541 MYL6BP14649 208 aa23.01■■□□□ 1.27
RETREG3-210ENST00000590541 GLIS2Q9BZE0 524 aaPredicted RBP23.01■■□□□ 1.27
RETREG3-210ENST00000590541 MCOLN1Q9GZU1 580 aa23.01■■□□□ 1.27
RETREG3-210ENST00000590541 VPS33BQ9H267 617 aa23.01■■□□□ 1.27
RETREG3-210ENST00000590541 PPP2R1AP30153 589 aa23■■□□□ 1.27
RETREG3-210ENST00000590541 EIF4A1P60842 406 aaKnown RBP23■■□□□ 1.27
RETREG3-210ENST00000590541 HHIPL1Q96JK4 782 aa23■■□□□ 1.27
RETREG3-210ENST00000590541 PGAP2Q9UHJ9 254 aa23■■□□□ 1.27
RETREG3-210ENST00000590541 ZNRF3Q9ULT6 936 aa23■■□□□ 1.27
RETREG3-210ENST00000590541 ATP6V0A2Q9Y487 856 aa23■■□□□ 1.27
RETREG3-210ENST00000590541 CA12O43570 354 aa22.99■■□□□ 1.27
RETREG3-210ENST00000590541 GMPSP49915 693 aaPredicted RBP22.99■■□□□ 1.27
RETREG3-210ENST00000590541 GIGYF2Q6Y7W6 1299 aaKnown RBP22.99■■□□□ 1.27
RETREG3-210ENST00000590541 PNISRQ8TF01 805 aaKnown RBP22.99■■□□□ 1.27
RETREG3-210ENST00000590541 RTFDC1Q9BY42 306 aaPredicted RBP22.99■■□□□ 1.27
RETREG3-210ENST00000590541 BRPF1P55201 1214 aaPredicted RBP22.98■■□□□ 1.27
RETREG3-210ENST00000590541 HIRAP54198 1017 aaPredicted RBP22.97■■□□□ 1.27
RETREG3-210ENST00000590541 NLRP3Q96P20 1036 aa22.97■■□□□ 1.27
RETREG3-210ENST00000590541 ABCC4O15439 1325 aa22.97■■□□□ 1.27
RETREG3-210ENST00000590541 PPP1R42Q7Z4L9 355 aa22.96■■□□□ 1.27
RETREG3-210ENST00000590541 SLC10A5Q5PT55 438 aa22.95■■□□□ 1.26
RETREG3-210ENST00000590541 CIAPIN1Q6FI81 312 aa22.95■■□□□ 1.26
RETREG3-210ENST00000590541 SUPT20HQ8NEM7 779 aa22.95■■□□□ 1.26
RETREG3-210ENST00000590541 DLG5Q8TDM6 1919 aa22.95■■□□□ 1.26
RETREG3-210ENST00000590541 CFAP44Q96MT7 982 aa22.95■■□□□ 1.26
RETREG3-210ENST00000590541 TMX4Q9H1E5 349 aaPredicted RBP22.95■■□□□ 1.26
RETREG3-210ENST00000590541 CASP8AP2Q9UKL3 1982 aa22.95■■□□□ 1.26
RETREG3-210ENST00000590541 CDHR2Q9BYE9 1310 aa22.94■■□□□ 1.26
RETREG3-210ENST00000590541 PARP10Q53GL7 1025 aa22.94■■□□□ 1.26
RETREG3-210ENST00000590541 TRPM4Q8TD43 1214 aa22.94■■□□□ 1.26
RETREG3-210ENST00000590541 ZC3H15Q8WU90 426 aaKnown RBP22.94■■□□□ 1.26
RETREG3-210ENST00000590541 ZNF408Q9H9D4 720 aa22.94■■□□□ 1.26
RETREG3-210ENST00000590541 KIAA2012Q0VF49 1180 aa22.93■■□□□ 1.26
RETREG3-210ENST00000590541 LRP10Q7Z4F1 713 aa22.93■■□□□ 1.26
RETREG3-210ENST00000590541 ZIC5Q96T25 663 aa22.93■■□□□ 1.26
RETREG3-210ENST00000590541 THUMPD2Q9BTF0 503 aaKnown RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms