RNA–Protein interactions for RNA: ENST00000588483.1

TPM4-209, Transcript of tropomyosin 4, humanhuman

TSL 5

Gene TPM4, Length 801 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-209ENST00000588483 SNED1Q8TER0 1413 aa13.56□□□□□ -0.24
TPM4-209ENST00000588483 FAM177BA6PVY3 158 aa13.56□□□□□ -0.24
TPM4-209ENST00000588483 CCER2I3L3R5 266 aa13.56□□□□□ -0.24
TPM4-209ENST00000588483 GTF2E1P29083 439 aaPredicted RBP13.56□□□□□ -0.24
TPM4-209ENST00000588483 HOXA10P31260 410 aaPredicted RBP13.56□□□□□ -0.24
TPM4-209ENST00000588483 TRIM28Q13263 835 aaKnown RBP13.56□□□□□ -0.24
TPM4-209ENST00000588483 CCDC30Q5VVM6 783 aa13.56□□□□□ -0.24
TPM4-209ENST00000588483 C9orf131Q5VYM1 1079 aa13.56□□□□□ -0.24
TPM4-209ENST00000588483 ISCA1Q9BUE6 129 aa13.56□□□□□ -0.24
TPM4-209ENST00000588483 UTP14AQ9BVJ6 771 aaKnown RBP13.56□□□□□ -0.24
TPM4-209ENST00000588483 FANCIQ9NVI1 1328 aa13.56□□□□□ -0.24
TPM4-209ENST00000588483 ELL2O00472 640 aaPredicted RBP13.55□□□□□ -0.24
TPM4-209ENST00000588483 ALDH1B1P30837 517 aa13.55□□□□□ -0.24
TPM4-209ENST00000588483 LAMB2P55268 1798 aa13.55□□□□□ -0.24
TPM4-209ENST00000588483 CCDC88AQ3V6T2 1871 aa13.55□□□□□ -0.24
TPM4-209ENST00000588483 TIAM2Q8IVF5 1701 aa13.54□□□□□ -0.24
TPM4-209ENST00000588483 C21orf2O43822 256 aa13.54□□□□□ -0.24
TPM4-209ENST00000588483 LMNB1P20700 586 aa13.54□□□□□ -0.24
TPM4-209ENST00000588483 PRELPP51888 382 aa13.54□□□□□ -0.24
TPM4-209ENST00000588483 RASSF7Q02833 373 aa13.54□□□□□ -0.24
TPM4-209ENST00000588483 TWISTNBQ3B726 338 aaPredicted RBP13.54□□□□□ -0.24
TPM4-209ENST00000588483 GPBP1L1Q9HC44 474 aaPredicted RBP13.54□□□□□ -0.24
TPM4-209ENST00000588483 DDX60Q8IY21 1712 aaKnown RBP13.53□□□□□ -0.24
TPM4-209ENST00000588483 GOLGA2Q08379 1002 aa13.53□□□□□ -0.24
TPM4-209ENST00000588483 CRAMP1Q96RY5 1269 aa13.53□□□□□ -0.24
TPM4-209ENST00000588483 PHAXQ9H814 394 aaKnown RBP13.53□□□□□ -0.24
TPM4-209ENST00000588483 SPINK5Q9NQ38 1064 aaPredicted RBP13.53□□□□□ -0.24
TPM4-209ENST00000588483 RNF181Q9P0P0 153 aa13.53□□□□□ -0.24
TPM4-209ENST00000588483 SH3TC1Q8TE82 1336 aa13.53□□□□□ -0.24
TPM4-209ENST00000588483 SENP3-EIF4A1A0A087X0R7 540 aa13.52□□□□□ -0.25
TPM4-209ENST00000588483 CCDC93Q567U6 631 aa13.52□□□□□ -0.25
TPM4-209ENST00000588483 C3orf67Q6ZVT6 689 aa13.52□□□□□ -0.25
TPM4-209ENST00000588483 NLRP3Q96P20 1036 aa13.52□□□□□ -0.25
TPM4-209ENST00000588483 TAOK3Q9H2K8 898 aa13.52□□□□□ -0.25
TPM4-209ENST00000588483 VAMP4O75379 141 aa13.51□□□□□ -0.25
TPM4-209ENST00000588483 DDX58O95786 925 aaKnown RBP13.51□□□□□ -0.25
TPM4-209ENST00000588483 CC2D2BQ6DHV5 1058 aa13.51□□□□□ -0.25
TPM4-209ENST00000588483 RPGRQ92834 1020 aaKnown RBP13.51□□□□□ -0.25
TPM4-209ENST00000588483 STK31Q9BXU1 1019 aa13.51□□□□□ -0.25
TPM4-209ENST00000588483 MYH16Q9H6N6 1097 aa13.51□□□□□ -0.25
TPM4-209ENST00000588483 TRMT112Q9UI30 125 aaKnown RBP13.51□□□□□ -0.25
TPM4-209ENST00000588483 KIF3CO14782 793 aa13.5□□□□□ -0.25
TPM4-209ENST00000588483 C1QTNF8P60827 252 aa13.5□□□□□ -0.25
TPM4-209ENST00000588483 GRIPAP1Q4V328 841 aa13.5□□□□□ -0.25
TPM4-209ENST00000588483 RIC3Q7Z5B4 369 aa13.5□□□□□ -0.25
TPM4-209ENST00000588483 RTKN2Q8IZC4 609 aa13.5□□□□□ -0.25
TPM4-209ENST00000588483 RBM17Q96I25 401 aaKnown RBP13.5□□□□□ -0.25
TPM4-209ENST00000588483 FKBP4Q02790 459 aaKnown RBP eCLIP13.49□□□□□ -0.25
TPM4-209ENST00000588483 KSR2Q6VAB6 950 aa13.49□□□□□ -0.25
TPM4-209ENST00000588483 CCDC191Q8NCU4 936 aa13.49□□□□□ -0.25
TPM4-209ENST00000588483 PSMD1Q99460 953 aa13.49□□□□□ -0.25
TPM4-209ENST00000588483 METTL22Q9BUU2 404 aaPredicted RBP13.49□□□□□ -0.25
TPM4-209ENST00000588483 ZNF219Q9P2Y4 722 aaPredicted RBP13.49□□□□□ -0.25
TPM4-209ENST00000588483 SALL2Q9Y467 1007 aaPredicted RBP13.49□□□□□ -0.25
TPM4-209ENST00000588483 ABCC4O15439 1325 aa13.48□□□□□ -0.25
TPM4-209ENST00000588483 KDM2BQ8NHM5 1336 aa13.48□□□□□ -0.25
TPM4-209ENST00000588483 ATP5J2-PTCD1G3V325 749 aa13.48□□□□□ -0.25
TPM4-209ENST00000588483 HCLS1P14317 486 aaPredicted RBP13.48□□□□□ -0.25
TPM4-209ENST00000588483 EXOSC9Q06265 439 aaKnown RBP13.48□□□□□ -0.25
TPM4-209ENST00000588483 SF3B3Q15393 1217 aaKnown RBP13.48□□□□□ -0.25
TPM4-209ENST00000588483 SYNE4Q8N205 404 aa13.48□□□□□ -0.25
TPM4-209ENST00000588483 ZBTB38Q8NAP3 1195 aaPredicted RBP13.48□□□□□ -0.25
TPM4-209ENST00000588483 LRRC37AA6NMS7 1700 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 WDR90Q96KV7 1748 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 PI4KAP2A4QPH2 592 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 GLTPD2A6NH11 291 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 SLC4A2P04920 1241 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 PI4KAP1Q8N8J0 262 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 ZNF526Q8TF50 670 aaPredicted RBP13.47□□□□□ -0.25
TPM4-209ENST00000588483 MYD88Q99836 296 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 MAP3K2Q9Y2U5 619 aa13.47□□□□□ -0.25
TPM4-209ENST00000588483 PPEF1O14829 653 aaPredicted RBP13.46□□□□□ -0.25
TPM4-209ENST00000588483 BBOX1O75936 387 aa13.46□□□□□ -0.25
TPM4-209ENST00000588483 PCCAP05165 728 aaPredicted RBP13.46□□□□□ -0.25
TPM4-209ENST00000588483 HSP90B1P14625 803 aaKnown RBP13.46□□□□□ -0.25
TPM4-209ENST00000588483 FLIIQ13045 1269 aa13.46□□□□□ -0.25
TPM4-209ENST00000588483 OLFM4Q6UX06 510 aa13.46□□□□□ -0.25
TPM4-209ENST00000588483 G2E3Q7L622 706 aa13.46□□□□□ -0.25
TPM4-209ENST00000588483 FAM89AQ96GI7 184 aa13.46□□□□□ -0.25
TPM4-209ENST00000588483 CWC25Q9NXE8 425 aaPredicted RBP13.46□□□□□ -0.25
TPM4-209ENST00000588483 ATP6V0A2Q9Y487 856 aa13.46□□□□□ -0.25
TPM4-209ENST00000588483 CEP350Q5VT06 3117 aa13.46□□□□□ -0.26
TPM4-209ENST00000588483 CDHR2Q9BYE9 1310 aa13.45□□□□□ -0.26
TPM4-209ENST00000588483 E9PSI1 815 aa13.45□□□□□ -0.26
TPM4-209ENST00000588483 IRS4O14654 1257 aaPredicted RBP13.45□□□□□ -0.26
TPM4-209ENST00000588483 IGKV5-2P06315 115 aa13.45□□□□□ -0.26
TPM4-209ENST00000588483 GRAPQ13588 217 aa13.45□□□□□ -0.26
TPM4-209ENST00000588483 TMC4Q7Z404 712 aa13.45□□□□□ -0.26
TPM4-209ENST00000588483 GRAPLQ8TC17 118 aaPredicted RBP13.45□□□□□ -0.26
TPM4-209ENST00000588483 NMRK2Q9NPI5 230 aa13.45□□□□□ -0.26
TPM4-209ENST00000588483 DDX46Q7L014 1031 aaKnown RBP13.44□□□□□ -0.26
TPM4-209ENST00000588483 RTFDC1Q9BY42 306 aaPredicted RBP13.44□□□□□ -0.26
TPM4-209ENST00000588483 VPS33BQ9H267 617 aa13.44□□□□□ -0.26
TPM4-209ENST00000588483 MYH3P11055 1940 aa13.44□□□□□ -0.26
TPM4-209ENST00000588483 TAF1P21675 1872 aa13.44□□□□□ -0.26
TPM4-209ENST00000588483 NEURL1BA8MQ27 555 aa13.43□□□□□ -0.26
TPM4-209ENST00000588483 TCERG1O14776 1098 aaKnown RBP13.43□□□□□ -0.26
TPM4-209ENST00000588483 TOMM70O94826 608 aa13.43□□□□□ -0.26
TPM4-209ENST00000588483 IARSP41252 1262 aaKnown RBP13.43□□□□□ -0.26
TPM4-209ENST00000588483 SLFN5Q08AF3 891 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms