RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 FAM160A2Q8N612 972 aaPredicted RBP7□□□□□ -1.29
LIG3-210ENST00000588109 NGLY1Q96IV0 654 aa7□□□□□ -1.29
LIG3-210ENST00000588109 C8orf37Q96NL8 207 aa7□□□□□ -1.29
LIG3-210ENST00000588109 NLRP2Q9NX02 1062 aa7□□□□□ -1.29
LIG3-210ENST00000588109 PCDHB15Q9Y5E8 787 aa7□□□□□ -1.29
LIG3-210ENST00000588109 PLCH1Q4KWH8 1693 aa7□□□□□ -1.29
LIG3-210ENST00000588109 LMO7Q8WWI1 1683 aa7□□□□□ -1.29
LIG3-210ENST00000588109 FAM208AQ9UK61 1670 aaKnown RBP7□□□□□ -1.29
LIG3-210ENST00000588109 CAMTA1Q9Y6Y1 1673 aa7□□□□□ -1.29
LIG3-210ENST00000588109 COL5A2P05997 1499 aaPredicted RBP6.99□□□□□ -1.29
LIG3-210ENST00000588109 RGPD1P0DJD0 1748 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 SENP3-EIF4A1A0A087X0R7 540 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 PRKAR2BP31323 418 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 TUSC1Q2TAM9 212 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 MSS51Q4VC12 460 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 AEBP1Q8IUX7 1158 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 USHBP1Q8N6Y0 703 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 PRR7Q8TB68 274 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 TSC1Q92574 1164 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 RUNDC1Q96C34 613 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 LIMD1Q9UGP4 676 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 WDR17Q8IZU2 1322 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 IGSF1Q8N6C5 1336 aa6.99□□□□□ -1.29
LIG3-210ENST00000588109 LRP6O75581 1613 aa6.98□□□□□ -1.29
LIG3-210ENST00000588109 RGPD2P0DJD1 1756 aa6.98□□□□□ -1.29
LIG3-210ENST00000588109 RNF223E7ERA6 249 aa6.98□□□□□ -1.29
LIG3-210ENST00000588109 NBPF6Q5VWK0 638 aa6.98□□□□□ -1.29
LIG3-210ENST00000588109 ANKLE1Q8NAG6 615 aa6.98□□□□□ -1.29
LIG3-210ENST00000588109 NBPF4Q96M43 638 aa6.98□□□□□ -1.29
LIG3-210ENST00000588109 GOPCQ9HD26 462 aa6.98□□□□□ -1.29
LIG3-210ENST00000588109 CCDC9Q9Y3X0 531 aaKnown RBP6.98□□□□□ -1.29
LIG3-210ENST00000588109 APAF1O14727 1248 aa6.97□□□□□ -1.29
LIG3-210ENST00000588109 PPEF1O14829 653 aaPredicted RBP6.97□□□□□ -1.29
LIG3-210ENST00000588109 ZBTB24O43167 697 aaPredicted RBP6.97□□□□□ -1.29
LIG3-210ENST00000588109 RGS20O76081 388 aa6.97□□□□□ -1.29
LIG3-210ENST00000588109 CRB1P82279 1406 aa6.97□□□□□ -1.29
LIG3-210ENST00000588109 LARP1Q6PKG0 1096 aaKnown RBP6.97□□□□□ -1.29
LIG3-210ENST00000588109 CCDC24Q8N4L8 307 aa6.97□□□□□ -1.29
LIG3-210ENST00000588109 PROCA1Q8NCQ7 364 aaPredicted RBP6.97□□□□□ -1.29
LIG3-210ENST00000588109 RAPGEF4Q8WZA2 1011 aa6.97□□□□□ -1.29
LIG3-210ENST00000588109 USP35Q9P2H5 1018 aa6.97□□□□□ -1.29
LIG3-210ENST00000588109 NWD2Q9ULI1 1742 aa6.97□□□□□ -1.29
LIG3-210ENST00000588109 SLIT2O94813 1529 aa6.96□□□□□ -1.29
LIG3-210ENST00000588109 KDRP35968 1356 aa6.96□□□□□ -1.29
LIG3-210ENST00000588109 NRAPQ86VF7 1730 aa6.96□□□□□ -1.29
LIG3-210ENST00000588109 JUNDP17535 347 aa6.96□□□□□ -1.3
LIG3-210ENST00000588109 TATP17735 454 aaPredicted RBP6.96□□□□□ -1.3
LIG3-210ENST00000588109 UNC5CLQ8IV45 518 aa6.96□□□□□ -1.3
LIG3-210ENST00000588109 TCP11L2Q8N4U5 519 aa6.96□□□□□ -1.3
LIG3-210ENST00000588109 PLEKHF1Q96S99 279 aa6.96□□□□□ -1.3
LIG3-210ENST00000588109 CARD10Q9BWT7 1032 aa6.96□□□□□ -1.3
LIG3-210ENST00000588109 USP21Q9UK80 565 aa6.96□□□□□ -1.3
LIG3-210ENST00000588109 RRP7AQ9Y3A4 280 aaKnown RBP6.96□□□□□ -1.3
LIG3-210ENST00000588109 LILRB3O75022 631 aa6.95□□□□□ -1.3
LIG3-210ENST00000588109 MMP16P51512 607 aa6.95□□□□□ -1.3
LIG3-210ENST00000588109 QPCTQ16769 361 aa6.95□□□□□ -1.3
LIG3-210ENST00000588109 PLEKHO1Q53GL0 409 aaPredicted RBP6.95□□□□□ -1.3
LIG3-210ENST00000588109 FNBP4Q8N3X1 1017 aaPredicted RBP6.95□□□□□ -1.3
LIG3-210ENST00000588109 HELBQ8NG08 1087 aaPredicted RBP6.95□□□□□ -1.3
LIG3-210ENST00000588109 GAS2L2Q8NHY3 880 aa6.95□□□□□ -1.3
LIG3-210ENST00000588109 PHACTR3Q96KR7 559 aa6.95□□□□□ -1.3
LIG3-210ENST00000588109 PRDM9Q9NQV7 894 aa6.95□□□□□ -1.3
LIG3-210ENST00000588109 FCF1Q9Y324 198 aaKnown RBP6.95□□□□□ -1.3
LIG3-210ENST00000588109 AFF2P51816 1311 aa6.95□□□□□ -1.3
LIG3-210ENST00000588109 NCAPD2Q15021 1401 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 PARP4Q9UKK3 1724 aaKnown RBP6.94□□□□□ -1.3
LIG3-210ENST00000588109 DXOO77932 396 aaKnown RBP6.94□□□□□ -1.3
LIG3-210ENST00000588109 IL2RBP14784 551 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 TMPOP42166 694 aaKnown RBP6.94□□□□□ -1.3
LIG3-210ENST00000588109 RIPK4P57078 832 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 LMOD3Q0VAK6 560 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 NFE2L2Q16236 605 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 AMOTQ4VCS5 1084 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 DESI1Q6ICB0 168 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 HOMEZQ8IX15 550 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 NGEFQ8N5V2 710 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 PRKD2Q9BZL6 878 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 SPG7Q9UQ90 795 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 MEGF6O75095 1541 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 SPATA31A1Q5TZJ5 1347 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 ZBED9Q6R2W3 1325 aa6.94□□□□□ -1.3
LIG3-210ENST00000588109 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.93□□□□□ -1.3
LIG3-210ENST00000588109 BCL9LQ86UU0 1499 aa6.93□□□□□ -1.3
LIG3-210ENST00000588109 CD2BP2O95400 341 aaKnown RBP6.93□□□□□ -1.3
LIG3-210ENST00000588109 SLC19A1P41440 591 aa6.93□□□□□ -1.3
LIG3-210ENST00000588109 MYT1Q01538 1121 aa6.93□□□□□ -1.3
LIG3-210ENST00000588109 VPS72Q15906 364 aa6.93□□□□□ -1.3
LIG3-210ENST00000588109 MTHFSDQ2M296 383 aaKnown RBP6.93□□□□□ -1.3
LIG3-210ENST00000588109 RTL5Q5HYW3 569 aaPredicted RBP6.93□□□□□ -1.3
LIG3-210ENST00000588109 C1orf141Q5JVX7 400 aa6.93□□□□□ -1.3
LIG3-210ENST00000588109 ZNF530Q6P9A1 599 aaPredicted RBP6.93□□□□□ -1.3
LIG3-210ENST00000588109 RTF1Q92541 710 aaKnown RBP6.93□□□□□ -1.3
LIG3-210ENST00000588109 SPATA31A5Q5VU36 1347 aa6.93□□□□□ -1.3
LIG3-210ENST00000588109 SPATA31A7Q8IWB4 1347 aa6.93□□□□□ -1.3
LIG3-210ENST00000588109 GNAT3A8MTJ3 354 aa6.92□□□□□ -1.3
LIG3-210ENST00000588109 ZNF772Q68DY9 489 aaPredicted RBP6.92□□□□□ -1.3
LIG3-210ENST00000588109 ZCRB1Q8TBF4 217 aaKnown RBP6.92□□□□□ -1.3
LIG3-210ENST00000588109 NUDT12Q9BQG2 462 aa6.92□□□□□ -1.3
LIG3-210ENST00000588109 CDCA7Q9BWT1 371 aaPredicted RBP6.92□□□□□ -1.3
LIG3-210ENST00000588109 TRPC5Q9UL62 973 aaPredicted RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms