RNA–Protein interactions for RNA: ENST00000584074.5

PPP4R1-228, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 625 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-228ENST00000584074 C8orf58Q8NAV2 365 aa27.82■■■□□ 2.04
PPP4R1-228ENST00000584074 LTBP3Q9NS15 1303 aa27.82■■■□□ 2.04
PPP4R1-228ENST00000584074 CCDC27Q2M243 656 aa27.81■■■□□ 2.04
PPP4R1-228ENST00000584074 CCDC93Q567U6 631 aa27.81■■■□□ 2.04
PPP4R1-228ENST00000584074 NLRP10Q86W26 655 aa27.81■■■□□ 2.04
PPP4R1-228ENST00000584074 WWC1Q8IX03 1113 aa27.81■■■□□ 2.04
PPP4R1-228ENST00000584074 RPGRQ92834 1020 aaKnown RBP27.81■■■□□ 2.04
PPP4R1-228ENST00000584074 HYPKQ9NX55 129 aa27.81■■■□□ 2.04
PPP4R1-228ENST00000584074 FER1L6Q2WGJ9 1857 aa27.81■■■□□ 2.04
PPP4R1-228ENST00000584074 ANKRD13DQ6ZTN6 518 aa27.8■■■□□ 2.04
PPP4R1-228ENST00000584074 PLBD2Q8NHP8 589 aa27.8■■■□□ 2.04
PPP4R1-228ENST00000584074 RRAGCQ9HB90 399 aa27.8■■■□□ 2.04
PPP4R1-228ENST00000584074 HOXA10P31260 410 aaPredicted RBP27.79■■■□□ 2.04
PPP4R1-228ENST00000584074 TSR2Q969E8 191 aaKnown RBP27.79■■■□□ 2.04
PPP4R1-228ENST00000584074 TOMM70O94826 608 aa27.78■■■□□ 2.04
PPP4R1-228ENST00000584074 SLC10A5Q5PT55 438 aa27.78■■■□□ 2.04
PPP4R1-228ENST00000584074 ZNF428Q96B54 188 aa27.78■■■□□ 2.04
PPP4R1-228ENST00000584074 CEP350Q5VT06 3117 aa27.77■■■□□ 2.04
PPP4R1-228ENST00000584074 GLTPD2A6NH11 291 aa27.77■■■□□ 2.04
PPP4R1-228ENST00000584074 SYNE4Q8N205 404 aa27.77■■■□□ 2.04
PPP4R1-228ENST00000584074 TIAM2Q8IVF5 1701 aa27.76■■■□□ 2.03
PPP4R1-228ENST00000584074 TSPYL6Q8N831 410 aa27.76■■■□□ 2.03
PPP4R1-228ENST00000584074 NLRP3Q96P20 1036 aa27.76■■■□□ 2.03
PPP4R1-228ENST00000584074 TRMT112Q9UI30 125 aaKnown RBP27.76■■■□□ 2.03
PPP4R1-228ENST00000584074 RNF123Q5XPI4 1314 aa27.75■■■□□ 2.03
PPP4R1-228ENST00000584074 RBM17Q96I25 401 aaKnown RBP27.75■■■□□ 2.03
PPP4R1-228ENST00000584074 PHAXQ9H814 394 aaKnown RBP27.75■■■□□ 2.03
PPP4R1-228ENST00000584074 CCDC88AQ3V6T2 1871 aa27.74■■■□□ 2.03
PPP4R1-228ENST00000584074 ANKRD36CQ5JPF3 1778 aa27.74■■■□□ 2.03
PPP4R1-228ENST00000584074 HCLS1P14317 486 aaPredicted RBP27.74■■■□□ 2.03
PPP4R1-228ENST00000584074 FKBP4Q02790 459 aaKnown RBP eCLIP27.74■■■□□ 2.03
PPP4R1-228ENST00000584074 RTKN2Q8IZC4 609 aa27.74■■■□□ 2.03
PPP4R1-228ENST00000584074 CRAMP1Q96RY5 1269 aa27.74■■■□□ 2.03
PPP4R1-228ENST00000584074 SALL2Q9Y467 1007 aaPredicted RBP27.74■■■□□ 2.03
PPP4R1-228ENST00000584074 ATP5J2-PTCD1G3V325 749 aa27.73■■■□□ 2.03
PPP4R1-228ENST00000584074 NCBP3Q53F19 620 aaKnown RBP27.73■■■□□ 2.03
PPP4R1-228ENST00000584074 C16orf71Q8IYS4 520 aaPredicted RBP27.73■■■□□ 2.03
PPP4R1-228ENST00000584074 ISCA1Q9BUE6 129 aa27.73■■■□□ 2.03
PPP4R1-228ENST00000584074 ZNF277Q9NRM2 450 aaPredicted RBP27.73■■■□□ 2.03
PPP4R1-228ENST00000584074 SLC51AQ86UW1 340 aa27.72■■■□□ 2.03
PPP4R1-228ENST00000584074 SH3TC1Q8TE82 1336 aa27.71■■■□□ 2.03
PPP4R1-228ENST00000584074 HSPA6P17066 643 aa27.71■■■□□ 2.03
PPP4R1-228ENST00000584074 DPY19L2Q6NUT2 758 aa27.71■■■□□ 2.03
PPP4R1-228ENST00000584074 FAM9BQ8IZU0 186 aa27.71■■■□□ 2.03
PPP4R1-228ENST00000584074 IL16Q14005 1332 aa27.7■■■□□ 2.03
PPP4R1-228ENST00000584074 TCERG1O14776 1098 aaKnown RBP27.7■■■□□ 2.02
PPP4R1-228ENST00000584074 CCDC30Q5VVM6 783 aa27.7■■■□□ 2.02
PPP4R1-228ENST00000584074 RIC3Q7Z5B4 369 aa27.7■■■□□ 2.02
PPP4R1-228ENST00000584074 SNED1Q8TER0 1413 aa27.69■■■□□ 2.02
PPP4R1-228ENST00000584074 PPEF1O14829 653 aaPredicted RBP27.69■■■□□ 2.02
PPP4R1-228ENST00000584074 VEGFAP15692 232 aaPredicted RBP27.69■■■□□ 2.02
PPP4R1-228ENST00000584074 GOLGA2Q08379 1002 aa27.69■■■□□ 2.02
PPP4R1-228ENST00000584074 RBM46Q8TBY0 533 aaKnown RBP27.69■■■□□ 2.02
PPP4R1-228ENST00000584074 CC2D2BQ6DHV5 1058 aa27.68■■■□□ 2.02
PPP4R1-228ENST00000584074 FAM89AQ96GI7 184 aa27.67■■■□□ 2.02
PPP4R1-228ENST00000584074 CHMP4AQ9BY43 222 aa27.67■■■□□ 2.02
PPP4R1-228ENST00000584074 DICER1Q9UPY3 1922 aaKnown RBP27.67■■■□□ 2.02
PPP4R1-228ENST00000584074 ABCC4O15439 1325 aa27.67■■■□□ 2.02
PPP4R1-228ENST00000584074 POTECB2RU33 542 aa27.66■■■□□ 2.02
PPP4R1-228ENST00000584074 TRIM28Q13263 835 aaKnown RBP27.66■■■□□ 2.02
PPP4R1-228ENST00000584074 PSMD1Q99460 953 aa27.66■■■□□ 2.02
PPP4R1-228ENST00000584074 DDNO94850 711 aaPredicted RBP27.65■■■□□ 2.02
PPP4R1-228ENST00000584074 TWISTNBQ3B726 338 aaPredicted RBP27.65■■■□□ 2.02
PPP4R1-228ENST00000584074 WDR63Q8IWG1 891 aa27.65■■■□□ 2.02
PPP4R1-228ENST00000584074 IARSP41252 1262 aaKnown RBP27.64■■■□□ 2.02
PPP4R1-228ENST00000584074 RTL5Q5HYW3 569 aaPredicted RBP27.64■■■□□ 2.02
PPP4R1-228ENST00000584074 FANCIQ9NVI1 1328 aa27.64■■■□□ 2.01
PPP4R1-228ENST00000584074 MYD88Q99836 296 aa27.63■■■□□ 2.01
PPP4R1-228ENST00000584074 ATP6V0A2Q9Y487 856 aa27.63■■■□□ 2.01
PPP4R1-228ENST00000584074 GRIPAP1Q4V328 841 aa27.62■■■□□ 2.01
PPP4R1-228ENST00000584074 DDX46Q7L014 1031 aaKnown RBP27.62■■■□□ 2.01
PPP4R1-228ENST00000584074 STK31Q9BXU1 1019 aa27.62■■■□□ 2.01
PPP4R1-228ENST00000584074 LAMB2P55268 1798 aa27.61■■■□□ 2.01
PPP4R1-228ENST00000584074 DDX58O95786 925 aaKnown RBP27.61■■■□□ 2.01
PPP4R1-228ENST00000584074 FSTL1Q12841 308 aa27.61■■■□□ 2.01
PPP4R1-228ENST00000584074 ZNF541Q9H0D2 1346 aa27.61■■■□□ 2.01
PPP4R1-228ENST00000584074 WDR90Q96KV7 1748 aa27.61■■■□□ 2.01
PPP4R1-228ENST00000584074 BBOX1O75936 387 aa27.6■■■□□ 2.01
PPP4R1-228ENST00000584074 IRS4O14654 1257 aaPredicted RBP27.59■■■□□ 2.01
PPP4R1-228ENST00000584074 METTL22Q9BUU2 404 aaPredicted RBP27.59■■■□□ 2.01
PPP4R1-228ENST00000584074 TMX4Q9H1E5 349 aaPredicted RBP27.59■■■□□ 2.01
PPP4R1-228ENST00000584074 SPINK5Q9NQ38 1064 aaPredicted RBP27.59■■■□□ 2.01
PPP4R1-228ENST00000584074 MAP3K2Q9Y2U5 619 aa27.59■■■□□ 2.01
PPP4R1-228ENST00000584074 FZD9O00144 591 aa27.58■■■□□ 2.01
PPP4R1-228ENST00000584074 GRAPQ13588 217 aa27.58■■■□□ 2.01
PPP4R1-228ENST00000584074 G2E3Q7L622 706 aa27.58■■■□□ 2.01
PPP4R1-228ENST00000584074 ZBTB38Q8NAP3 1195 aaPredicted RBP27.58■■■□□ 2.01
PPP4R1-228ENST00000584074 SMC1BQ8NDV3 1235 aa27.58■■■□□ 2.01
PPP4R1-228ENST00000584074 GRAPLQ8TC17 118 aaPredicted RBP27.58■■■□□ 2.01
PPP4R1-228ENST00000584074 DDX60Q8IY21 1712 aaKnown RBP27.58■■■□□ 2.01
PPP4R1-228ENST00000584074 PI4KAP2A4QPH2 592 aa27.57■■■□□ 2
PPP4R1-228ENST00000584074 SLC4A2P04920 1241 aa27.57■■■□□ 2
PPP4R1-228ENST00000584074 SF3B3Q15393 1217 aaKnown RBP27.57■■■□□ 2
PPP4R1-228ENST00000584074 SP8Q8IXZ3 490 aa27.57■■■□□ 2
PPP4R1-228ENST00000584074 PI4KAP1Q8N8J0 262 aa27.57■■■□□ 2
PPP4R1-228ENST00000584074 CCDC191Q8NCU4 936 aa27.57■■■□□ 2
PPP4R1-228ENST00000584074 JDP2Q8WYK2 163 aa27.57■■■□□ 2
PPP4R1-228ENST00000584074 COL4A5P29400 1685 aa27.56■■■□□ 2
PPP4R1-228ENST00000584074 APLP1P51693 650 aa27.56■■■□□ 2
PPP4R1-228ENST00000584074 EXOSC9Q06265 439 aaKnown RBP27.56■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms