RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 BEND3Q5T5X7 828 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 COPS6Q7L5N1 327 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 SIRT2Q8IXJ6 389 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 LINS1Q8NG48 757 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 XAGE3Q8WTP9 111 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 USP44Q9H0E7 712 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 USP16Q9Y5T5 823 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 PARP3Q9Y6F1 533 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 ERBB4Q15303 1308 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 C4AP0C0L4 1744 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 KCPQ6ZWJ8 1503 aa11.47□□□□□ -0.57
SS18-220ENST00000582092 A0A087WZG4 1122 aa11.47□□□□□ -0.57
SS18-220ENST00000582092 CYP19A1P11511 503 aaPredicted RBP11.47□□□□□ -0.57
SS18-220ENST00000582092 PROSER3Q2NL68 480 aa11.47□□□□□ -0.57
SS18-220ENST00000582092 CASC1Q6TDU7 716 aa11.47□□□□□ -0.57
SS18-220ENST00000582092 IPO9Q96P70 1041 aaKnown RBP11.47□□□□□ -0.57
SS18-220ENST00000582092 GRIN3BO60391 1043 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 RAB11FIP3O75154 756 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 MMP10P09238 476 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 YY1P25490 414 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 SMIM5Q71RC9 77 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 AMIGO3Q86WK7 504 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 MYD88Q99836 296 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 LRRCC1Q9C099 1032 aa11.46□□□□□ -0.57
SS18-220ENST00000582092 ATP10DQ9P241 1426 aa11.45□□□□□ -0.58
SS18-220ENST00000582092 SURF6O75683 361 aaKnown RBP11.45□□□□□ -0.58
SS18-220ENST00000582092 GYS1P13807 737 aa11.45□□□□□ -0.58
SS18-220ENST00000582092 INTS5Q6P9B9 1019 aaKnown RBP11.45□□□□□ -0.58
SS18-220ENST00000582092 METTL22Q9BUU2 404 aaPredicted RBP11.45□□□□□ -0.58
SS18-220ENST00000582092 ADCY9O60503 1353 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 COL15A1P39059 1388 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 USP42Q9H9J4 1324 aaKnown RBP11.44□□□□□ -0.58
SS18-220ENST00000582092 GRM8O00222 908 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 SRGAP3O43295 1099 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 PDIA6Q15084 440 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 BMP2KLQ5H9B9 411 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 KIF6Q6ZMV9 814 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 PPP1R42Q7Z4L9 355 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 PLBD2Q8NHP8 589 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 NARFQ9UHQ1 456 aa11.44□□□□□ -0.58
SS18-220ENST00000582092 ZNF330Q9Y3S2 320 aaPredicted RBP11.44□□□□□ -0.58
SS18-220ENST00000582092 NLGN2Q8NFZ4 835 aa11.43□□□□□ -0.58
SS18-220ENST00000582092 EXOC6BQ9Y2D4 811 aa11.43□□□□□ -0.58
SS18-220ENST00000582092 ZBTB1Q9Y2K1 713 aa11.43□□□□□ -0.58
SS18-220ENST00000582092 KIF13BQ9NQT8 1826 aa11.43□□□□□ -0.58
SS18-220ENST00000582092 NBPF7P0C2Y1 421 aaPredicted RBP11.42□□□□□ -0.58
SS18-220ENST00000582092 IL6STP40189 918 aaPredicted RBP11.42□□□□□ -0.58
SS18-220ENST00000582092 TGFB2P61812 414 aa11.42□□□□□ -0.58
SS18-220ENST00000582092 G3BP1Q13283 466 aaKnown RBP eCLIP11.42□□□□□ -0.58
SS18-220ENST00000582092 BECN1Q14457 450 aa11.42□□□□□ -0.58
SS18-220ENST00000582092 CWF19L2Q2TBE0 894 aaKnown RBP11.42□□□□□ -0.58
SS18-220ENST00000582092 ERC1Q8IUD2 1116 aa11.42□□□□□ -0.58
SS18-220ENST00000582092 SSH3Q8TE77 659 aa11.42□□□□□ -0.58
SS18-220ENST00000582092 PNMA6EA0A0J9YXQ4 647 aa11.41□□□□□ -0.58
SS18-220ENST00000582092 SMARCA5O60264 1052 aaPredicted RBP11.41□□□□□ -0.58
SS18-220ENST00000582092 CDC45O75419 566 aa11.41□□□□□ -0.58
SS18-220ENST00000582092 A1BGP04217 495 aa11.41□□□□□ -0.58
SS18-220ENST00000582092 PIP4K2AP48426 406 aaPredicted RBP11.41□□□□□ -0.58
SS18-220ENST00000582092 EIF5P55010 431 aaKnown RBP11.41□□□□□ -0.58
SS18-220ENST00000582092 MFAP1P55081 439 aaKnown RBP11.41□□□□□ -0.58
SS18-220ENST00000582092 USPL1Q5W0Q7 1092 aa11.41□□□□□ -0.58
SS18-220ENST00000582092 PLEKHM2Q8IWE5 1019 aa11.41□□□□□ -0.58
SS18-220ENST00000582092 KIF1BPQ96EK5 621 aa11.41□□□□□ -0.58
SS18-220ENST00000582092 SRP68Q9UHB9 627 aaKnown RBP11.41□□□□□ -0.58
SS18-220ENST00000582092 NOP58Q9Y2X3 529 aaKnown RBP11.41□□□□□ -0.58
SS18-220ENST00000582092 NEURL1BA8MQ27 555 aa11.4□□□□□ -0.58
SS18-220ENST00000582092 GCKRQ14397 625 aa11.4□□□□□ -0.58
SS18-220ENST00000582092 TTC22Q5TAA0 569 aa11.4□□□□□ -0.58
SS18-220ENST00000582092 GPATCH3Q96I76 525 aa11.4□□□□□ -0.58
SS18-220ENST00000582092 LAMB4A4D0S4 1761 aa11.4□□□□□ -0.58
SS18-220ENST00000582092 N4BP2Q86UW6 1770 aaPredicted RBP11.39□□□□□ -0.59
SS18-220ENST00000582092 ATP5J2-PTCD1G3V325 749 aa11.39□□□□□ -0.59
SS18-220ENST00000582092 NPHP1O15259 732 aa11.39□□□□□ -0.59
SS18-220ENST00000582092 POLA2Q14181 598 aa11.39□□□□□ -0.59
SS18-220ENST00000582092 C16orf71Q8IYS4 520 aaPredicted RBP11.39□□□□□ -0.59
SS18-220ENST00000582092 CWC25Q9NXE8 425 aaPredicted RBP11.39□□□□□ -0.59
SS18-220ENST00000582092 ZNF652Q9Y2D9 606 aa11.39□□□□□ -0.59
SS18-220ENST00000582092 AFDNP55196 1824 aaKnown RBP11.39□□□□□ -0.59
SS18-220ENST00000582092 TRIM6-TRIM34B2RNG4 842 aa11.38□□□□□ -0.59
SS18-220ENST00000582092 TM4SF1P30408 202 aa11.38□□□□□ -0.59
SS18-220ENST00000582092 HSP90AB3PQ58FF7 597 aa11.38□□□□□ -0.59
SS18-220ENST00000582092 CLASRPQ8N2M8 674 aaKnown RBP11.38□□□□□ -0.59
SS18-220ENST00000582092 C22orf23Q9BZE7 217 aa11.38□□□□□ -0.59
SS18-220ENST00000582092 ZBTB3Q9H5J0 574 aa11.38□□□□□ -0.59
SS18-220ENST00000582092 CHMP3Q9Y3E7 222 aa11.38□□□□□ -0.59
SS18-220ENST00000582092 IBTKQ9P2D0 1353 aaPredicted RBP11.38□□□□□ -0.59
SS18-220ENST00000582092 UTYO14607 1347 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 C10orf71Q711Q0 1435 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 NBPF26B4DH59 902 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 IGKV5-2P06315 115 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 IFIT2P09913 472 aaKnown RBP11.37□□□□□ -0.59
SS18-220ENST00000582092 MX1P20591 662 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 MTX1Q13505 466 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 NBPF10Q6P3W6 841 aaKnown RBP11.37□□□□□ -0.59
SS18-220ENST00000582092 UBE3BQ7Z3V4 1068 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 DZIP3Q86Y13 1208 aaKnown RBP11.37□□□□□ -0.59
SS18-220ENST00000582092 NBPF15Q8N660 670 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 CCDC191Q8NCU4 936 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 RHPN1Q8TCX5 695 aa11.37□□□□□ -0.59
SS18-220ENST00000582092 SUCLG2Q96I99 432 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms