RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CC2D2BQ6DHV5 1058 aa17.08■□□□□ 0.32
SS18-219ENST00000581570 CYP4F22Q6NT55 531 aa17.08■□□□□ 0.32
SS18-219ENST00000581570 NBPF10Q6P3W6 841 aaKnown RBP17.08■□□□□ 0.32
SS18-219ENST00000581570 NBPF15Q8N660 670 aa17.08■□□□□ 0.32
SS18-219ENST00000581570 PRKAR2BP31323 418 aa17.07■□□□□ 0.32
SS18-219ENST00000581570 EPS15P42566 896 aa17.07■□□□□ 0.32
SS18-219ENST00000581570 RGS19P49795 217 aa17.07■□□□□ 0.32
SS18-219ENST00000581570 SIPA1L3O60292 1781 aaPredicted RBP17.07■□□□□ 0.32
SS18-219ENST00000581570 COL3A1P02461 1466 aaPredicted RBP17.06■□□□□ 0.32
SS18-219ENST00000581570 SCNN1DP51172 638 aa17.06■□□□□ 0.32
SS18-219ENST00000581570 CST9Q5W186 159 aa17.06■□□□□ 0.32
SS18-219ENST00000581570 USP50Q70EL3 339 aaPredicted RBP17.06■□□□□ 0.32
SS18-219ENST00000581570 RTF1Q92541 710 aaKnown RBP17.06■□□□□ 0.32
SS18-219ENST00000581570 CRY2Q49AN0 593 aa17.05■□□□□ 0.32
SS18-219ENST00000581570 MCM10Q7L590 875 aa17.05■□□□□ 0.32
SS18-219ENST00000581570 LARGE2Q8N3Y3 721 aa17.05■□□□□ 0.32
SS18-219ENST00000581570 NYXQ9GZU5 481 aa17.05■□□□□ 0.32
SS18-219ENST00000581570 RSPH6AQ9H0K4 717 aa17.05■□□□□ 0.32
SS18-219ENST00000581570 TLL2Q9Y6L7 1015 aa17.05■□□□□ 0.32
SS18-219ENST00000581570 SNED1Q8TER0 1413 aa17.04■□□□□ 0.32
SS18-219ENST00000581570 TRAF5O00463 557 aa17.04■□□□□ 0.32
SS18-219ENST00000581570 MAP2K2P36507 400 aa17.04■□□□□ 0.32
SS18-219ENST00000581570 GRIPAP1Q4V328 841 aa17.04■□□□□ 0.32
SS18-219ENST00000581570 NUTM1Q86Y26 1132 aa17.04■□□□□ 0.32
SS18-219ENST00000581570 RPGRQ92834 1020 aaKnown RBP17.04■□□□□ 0.32
SS18-219ENST00000581570 TSKSQ9UJT2 592 aa17.04■□□□□ 0.32
SS18-219ENST00000581570 AOC2O75106 756 aa17.03■□□□□ 0.32
SS18-219ENST00000581570 HOXA10P31260 410 aaPredicted RBP17.02■□□□□ 0.32
SS18-219ENST00000581570 NIM1KQ8IY84 436 aa17.02■□□□□ 0.32
SS18-219ENST00000581570 NGEFQ8N5V2 710 aa17.02■□□□□ 0.32
SS18-219ENST00000581570 ABCC12Q96J65 1359 aa17.02■□□□□ 0.31
SS18-219ENST00000581570 COL4A5P29400 1685 aa17.01■□□□□ 0.31
SS18-219ENST00000581570 ERVV-1B6SEH8 477 aa17.01■□□□□ 0.31
SS18-219ENST00000581570 TCERG1O14776 1098 aaKnown RBP17.01■□□□□ 0.31
SS18-219ENST00000581570 DCTN1Q14203 1278 aa17.01■□□□□ 0.31
SS18-219ENST00000581570 CFAP53Q96M91 514 aa17.01■□□□□ 0.31
SS18-219ENST00000581570 CFAP44Q96MT7 982 aa17.01■□□□□ 0.31
SS18-219ENST00000581570 NPC1L1Q9UHC9 1359 aa17.01■□□□□ 0.31
SS18-219ENST00000581570 LTBP1Q14766 1721 aa17■□□□□ 0.31
SS18-219ENST00000581570 RBM17Q96I25 401 aaKnown RBP17■□□□□ 0.31
SS18-219ENST00000581570 MCOLN1Q9GZU1 580 aa17■□□□□ 0.31
SS18-219ENST00000581570 ADARB2Q9NS39 739 aaKnown RBP17■□□□□ 0.31
SS18-219ENST00000581570 NUDCQ9Y266 331 aa17■□□□□ 0.31
SS18-219ENST00000581570 PPEF1O14829 653 aaPredicted RBP16.99■□□□□ 0.31
SS18-219ENST00000581570 PPIP5K2O43314 1243 aa16.99■□□□□ 0.31
SS18-219ENST00000581570 CA12O43570 354 aa16.99■□□□□ 0.31
SS18-219ENST00000581570 CELF2O95319 508 aaKnown RBP16.99■□□□□ 0.31
SS18-219ENST00000581570 TAF7Q15545 349 aaPredicted RBP16.99■□□□□ 0.31
SS18-219ENST00000581570 SAPCD2Q86UD0 394 aa16.99■□□□□ 0.31
SS18-219ENST00000581570 CRAMP1Q96RY5 1269 aa16.99■□□□□ 0.31
SS18-219ENST00000581570 GPRC5DQ9NZD1 345 aa16.99■□□□□ 0.31
SS18-219ENST00000581570 PCDH10Q9P2E7 1040 aa16.99■□□□□ 0.31
SS18-219ENST00000581570 THSD7BQ9C0I4 1608 aa16.99■□□□□ 0.31
SS18-219ENST00000581570 MAP3K15Q6ZN16 1313 aa16.98■□□□□ 0.31
SS18-219ENST00000581570 HTATSF1O43719 755 aaKnown RBP16.98■□□□□ 0.31
SS18-219ENST00000581570 U2AF1L5P0DN76 240 aaPredicted RBP16.98■□□□□ 0.31
SS18-219ENST00000581570 GPTP24298 496 aa16.98■□□□□ 0.31
SS18-219ENST00000581570 U2AF1Q01081 240 aaKnown RBP eCLIP16.98■□□□□ 0.312e-6■■■■□ 21.7
SS18-219ENST00000581570 SLC51AQ86UW1 340 aa16.98■□□□□ 0.31
SS18-219ENST00000581570 TMX4Q9H1E5 349 aaPredicted RBP16.98■□□□□ 0.31
SS18-219ENST00000581570 MIS18AQ9NYP9 233 aa16.98■□□□□ 0.31
SS18-219ENST00000581570 AOC3Q16853 763 aa16.97■□□□□ 0.31
SS18-219ENST00000581570 SUSD4Q5VX71 490 aa16.97■□□□□ 0.31
SS18-219ENST00000581570 KIF6Q6ZMV9 814 aa16.97■□□□□ 0.31
SS18-219ENST00000581570 TTLL7Q6ZT98 887 aa16.97■□□□□ 0.31
SS18-219ENST00000581570 VPS33BQ9H267 617 aa16.97■□□□□ 0.31
SS18-219ENST00000581570 RRP7AQ9Y3A4 280 aaKnown RBP16.97■□□□□ 0.31
SS18-219ENST00000581570 BRPF1P55201 1214 aaPredicted RBP16.96■□□□□ 0.31
SS18-219ENST00000581570 CXCL9Q07325 125 aa16.96■□□□□ 0.31
SS18-219ENST00000581570 HHIPL1Q96JK4 782 aa16.96■□□□□ 0.31
SS18-219ENST00000581570 GLIS2Q9BZE0 524 aaPredicted RBP16.96■□□□□ 0.31
SS18-219ENST00000581570 ZNRF3Q9ULT6 936 aa16.96■□□□□ 0.31
SS18-219ENST00000581570 UBN2Q6ZU65 1347 aa16.96■□□□□ 0.3
SS18-219ENST00000581570 DGKZQ13574 1117 aa16.95■□□□□ 0.3
SS18-219ENST00000581570 ZBTB3Q9H5J0 574 aa16.95■□□□□ 0.3
SS18-219ENST00000581570 RIC1Q4ADV7 1423 aa16.95■□□□□ 0.3
SS18-219ENST00000581570 IBTKQ9P2D0 1353 aaPredicted RBP16.94■□□□□ 0.3
SS18-219ENST00000581570 MYL6BP14649 208 aa16.94■□□□□ 0.3
SS18-219ENST00000581570 GMPSP49915 693 aaPredicted RBP16.94■□□□□ 0.3
SS18-219ENST00000581570 C3orf67Q6ZVT6 689 aa16.94■□□□□ 0.3
SS18-219ENST00000581570 SUPT20HQ8NEM7 779 aa16.94■□□□□ 0.3
SS18-219ENST00000581570 NLRP3Q96P20 1036 aa16.94■□□□□ 0.3
SS18-219ENST00000581570 ZNF408Q9H9D4 720 aa16.94■□□□□ 0.3
SS18-219ENST00000581570 PGAP2Q9UHJ9 254 aa16.94■□□□□ 0.3
SS18-219ENST00000581570 ATP6V0A2Q9Y487 856 aa16.94■□□□□ 0.3
SS18-219ENST00000581570 NTSR2O95665 410 aa16.93■□□□□ 0.3
SS18-219ENST00000581570 CIAPIN1Q6FI81 312 aa16.93■□□□□ 0.3
SS18-219ENST00000581570 PPP1R42Q7Z4L9 355 aa16.93■□□□□ 0.3
SS18-219ENST00000581570 ZNF34Q8IZ26 560 aa16.93■□□□□ 0.3
SS18-219ENST00000581570 PNISRQ8TF01 805 aaKnown RBP16.93■□□□□ 0.3
SS18-219ENST00000581570 CDC37L1Q7L3B6 337 aa16.92■□□□□ 0.3
SS18-219ENST00000581570 ZC3H15Q8WU90 426 aaKnown RBP16.92■□□□□ 0.3
SS18-219ENST00000581570 BCL2L13Q9BXK5 485 aa16.92■□□□□ 0.3
SS18-219ENST00000581570 TRPM7Q96QT4 1865 aa16.91■□□□□ 0.3
SS18-219ENST00000581570 HIRAP54198 1017 aaPredicted RBP16.91■□□□□ 0.3
SS18-219ENST00000581570 GIGYF2Q6Y7W6 1299 aaKnown RBP16.91■□□□□ 0.3
SS18-219ENST00000581570 CCER1Q8TC90 406 aaPredicted RBP16.91■□□□□ 0.3
SS18-219ENST00000581570 RTFDC1Q9BY42 306 aaPredicted RBP16.91■□□□□ 0.3
SS18-219ENST00000581570 RAD17O75943 681 aa16.9■□□□□ 0.3
SS18-219ENST00000581570 EIF4A1P60842 406 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms