RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 NUTM1Q86Y26 1132 aa13.22□□□□□ -0.29
RFFL-208ENST00000581039 ABHD8Q96I13 439 aa13.22□□□□□ -0.29
RFFL-208ENST00000581039 BEGAINQ9BUH8 593 aa13.22□□□□□ -0.29
RFFL-208ENST00000581039 BCORQ6W2J9 1755 aa13.22□□□□□ -0.29
RFFL-208ENST00000581039 ERVV-1B6SEH8 477 aa13.21□□□□□ -0.29
RFFL-208ENST00000581039 ECE1P42892 770 aa13.21□□□□□ -0.29
RFFL-208ENST00000581039 LARGE2Q8N3Y3 721 aa13.21□□□□□ -0.29
RFFL-208ENST00000581039 MIS18AQ9NYP9 233 aa13.21□□□□□ -0.29
RFFL-208ENST00000581039 HOXA10P31260 410 aaPredicted RBP13.2□□□□□ -0.3
RFFL-208ENST00000581039 EPS15P42566 896 aa13.2□□□□□ -0.3
RFFL-208ENST00000581039 GRM1Q13255 1194 aa13.2□□□□□ -0.3
RFFL-208ENST00000581039 KIF6Q6ZMV9 814 aa13.2□□□□□ -0.3
RFFL-208ENST00000581039 RBM17Q96I25 401 aaKnown RBP13.2□□□□□ -0.3
RFFL-208ENST00000581039 CAPNS2Q96L46 248 aa13.2□□□□□ -0.3
RFFL-208ENST00000581039 TMX4Q9H1E5 349 aaPredicted RBP13.2□□□□□ -0.3
RFFL-208ENST00000581039 RRP7AQ9Y3A4 280 aaKnown RBP13.2□□□□□ -0.3
RFFL-208ENST00000581039 TCERG1O14776 1098 aaKnown RBP13.19□□□□□ -0.3
RFFL-208ENST00000581039 USP50Q70EL3 339 aaPredicted RBP13.19□□□□□ -0.3
RFFL-208ENST00000581039 PNISRQ8TF01 805 aaKnown RBP13.19□□□□□ -0.3
RFFL-208ENST00000581039 GPR101Q96P66 508 aaPredicted RBP13.19□□□□□ -0.3
RFFL-208ENST00000581039 MAP3K15Q6ZN16 1313 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 ADAMTSL1Q8N6G6 1762 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 PPEF1O14829 653 aaPredicted RBP13.18□□□□□ -0.3
RFFL-208ENST00000581039 NEFMP07197 916 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 GPTP24298 496 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 PPP2R1AP30153 589 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 SCNN1DP51172 638 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 FMR1Q06787 632 aaKnown RBP eCLIP13.18□□□□□ -0.3
RFFL-208ENST00000581039 NIM1KQ8IY84 436 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 CRAMP1Q96RY5 1269 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 ABCC12Q96J65 1359 aa13.18□□□□□ -0.3
RFFL-208ENST00000581039 CCDC85CA6NKD9 419 aa13.17□□□□□ -0.3
RFFL-208ENST00000581039 MYL6BP14649 208 aa13.17□□□□□ -0.3
RFFL-208ENST00000581039 SUSD4Q5VX71 490 aa13.17□□□□□ -0.3
RFFL-208ENST00000581039 CST9Q5W186 159 aa13.17□□□□□ -0.3
RFFL-208ENST00000581039 CYP4F22Q6NT55 531 aa13.17□□□□□ -0.3
RFFL-208ENST00000581039 TTLL7Q6ZT98 887 aa13.17□□□□□ -0.3
RFFL-208ENST00000581039 ZBTB3Q9H5J0 574 aa13.17□□□□□ -0.3
RFFL-208ENST00000581039 SNED1Q8TER0 1413 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 TRAF5O00463 557 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 PPIP5K2O43314 1243 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 MAP2K2P36507 400 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 FAM161AQ3B820 660 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 PPP1R42Q7Z4L9 355 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 VPS33BQ9H267 617 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 TLL2Q9Y6L7 1015 aa13.16□□□□□ -0.3
RFFL-208ENST00000581039 EIF4A1P60842 406 aaKnown RBP13.15□□□□□ -0.3
RFFL-208ENST00000581039 ZNF34Q8IZ26 560 aa13.15□□□□□ -0.3
RFFL-208ENST00000581039 NLRP3Q96P20 1036 aa13.15□□□□□ -0.3
RFFL-208ENST00000581039 ADARB2Q9NS39 739 aaKnown RBP13.15□□□□□ -0.3
RFFL-208ENST00000581039 GPRC5DQ9NZD1 345 aa13.15□□□□□ -0.3
RFFL-208ENST00000581039 UBN2Q6ZU65 1347 aa13.14□□□□□ -0.31
RFFL-208ENST00000581039 MLLT1Q03111 559 aaPredicted RBP13.14□□□□□ -0.31
RFFL-208ENST00000581039 AOC3Q16853 763 aa13.14□□□□□ -0.31
RFFL-208ENST00000581039 SUPT20HQ8NEM7 779 aa13.14□□□□□ -0.31
RFFL-208ENST00000581039 ZNRF3Q9ULT6 936 aa13.14□□□□□ -0.31
RFFL-208ENST00000581039 ATP6V0A2Q9Y487 856 aa13.14□□□□□ -0.31
RFFL-208ENST00000581039 IBTKQ9P2D0 1353 aaPredicted RBP13.14□□□□□ -0.31
RFFL-208ENST00000581039 COL4A5P29400 1685 aa13.14□□□□□ -0.31
RFFL-208ENST00000581039 AOC2O75106 756 aa13.13□□□□□ -0.31
RFFL-208ENST00000581039 CELF2O95319 508 aaKnown RBP13.13□□□□□ -0.31
RFFL-208ENST00000581039 NTSR2O95665 410 aa13.13□□□□□ -0.31
RFFL-208ENST00000581039 CXCL9Q07325 125 aa13.13□□□□□ -0.31
RFFL-208ENST00000581039 PARP10Q53GL7 1025 aa13.13□□□□□ -0.31
RFFL-208ENST00000581039 GIGYF2Q6Y7W6 1299 aaKnown RBP13.13□□□□□ -0.31
RFFL-208ENST00000581039 C3orf67Q6ZVT6 689 aa13.13□□□□□ -0.31
RFFL-208ENST00000581039 TSKSQ9UJT2 592 aa13.13□□□□□ -0.31
RFFL-208ENST00000581039 RIC1Q4ADV7 1423 aa13.13□□□□□ -0.31
RFFL-208ENST00000581039 CA12O43570 354 aa13.12□□□□□ -0.31
RFFL-208ENST00000581039 BBOX1O75936 387 aa13.12□□□□□ -0.31
RFFL-208ENST00000581039 SLC34A2O95436 690 aa13.12□□□□□ -0.31
RFFL-208ENST00000581039 GMPSP49915 693 aaPredicted RBP13.12□□□□□ -0.31
RFFL-208ENST00000581039 SLC10A5Q5PT55 438 aa13.12□□□□□ -0.31
RFFL-208ENST00000581039 SAPCD2Q86UD0 394 aa13.12□□□□□ -0.31
RFFL-208ENST00000581039 SLC51AQ86UW1 340 aa13.12□□□□□ -0.31
RFFL-208ENST00000581039 UTP14AQ9BVJ6 771 aaKnown RBP13.12□□□□□ -0.31
RFFL-208ENST00000581039 BCL2L13Q9BXK5 485 aa13.12□□□□□ -0.31
RFFL-208ENST00000581039 LTBP1Q14766 1721 aa13.11□□□□□ -0.31
RFFL-208ENST00000581039 RGS19P49795 217 aa13.11□□□□□ -0.31
RFFL-208ENST00000581039 TNIP1Q15025 636 aa13.11□□□□□ -0.31
RFFL-208ENST00000581039 DPP8Q6V1X1 898 aaPredicted RBP13.11□□□□□ -0.31
RFFL-208ENST00000581039 SP8Q8IXZ3 490 aa13.11□□□□□ -0.31
RFFL-208ENST00000581039 HHIPL1Q96JK4 782 aa13.11□□□□□ -0.31
RFFL-208ENST00000581039 RTFDC1Q9BY42 306 aaPredicted RBP13.11□□□□□ -0.31
RFFL-208ENST00000581039 GLIS2Q9BZE0 524 aaPredicted RBP13.11□□□□□ -0.31
RFFL-208ENST00000581039 ERBB4Q15303 1308 aa13.11□□□□□ -0.31
RFFL-208ENST00000581039 CIAPIN1Q6FI81 312 aa13.1□□□□□ -0.31
RFFL-208ENST00000581039 CDC37L1Q7L3B6 337 aa13.1□□□□□ -0.31
RFFL-208ENST00000581039 MPNDQ8N594 471 aa13.1□□□□□ -0.31
RFFL-208ENST00000581039 ZC3H15Q8WU90 426 aaKnown RBP13.1□□□□□ -0.31
RFFL-208ENST00000581039 CFAP44Q96MT7 982 aa13.1□□□□□ -0.31
RFFL-208ENST00000581039 THUMPD2Q9BTF0 503 aaKnown RBP13.1□□□□□ -0.31
RFFL-208ENST00000581039 PNNQ9H307 717 aaKnown RBP13.1□□□□□ -0.31
RFFL-208ENST00000581039 ZNF408Q9H9D4 720 aa13.1□□□□□ -0.31
RFFL-208ENST00000581039 PGAP2Q9UHJ9 254 aa13.1□□□□□ -0.31
RFFL-208ENST00000581039 ABCC4O15439 1325 aa13.1□□□□□ -0.31
RFFL-208ENST00000581039 NUP98P52948 1817 aa13.09□□□□□ -0.31
RFFL-208ENST00000581039 EIF2S2P20042 333 aaKnown RBP13.09□□□□□ -0.31
RFFL-208ENST00000581039 BRPF1P55201 1214 aaPredicted RBP13.09□□□□□ -0.31
RFFL-208ENST00000581039 NFE2L2Q16236 605 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 320.6 ms