RNA–Protein interactions for RNA: ENST00000580569.1

RFFL-207, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5

Gene RFFL, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-207ENST00000580569 TNRC6CQ9HCJ0 1690 aaKnown RBP9.97□□□□□ -0.81
RFFL-207ENST00000580569 RBM46Q8TBY0 533 aaKnown RBP9.97□□□□□ -0.81
RFFL-207ENST00000580569 BABAM1Q9NWV8 329 aa9.97□□□□□ -0.81
RFFL-207ENST00000580569 PALLDQ8WX93 1383 aa9.97□□□□□ -0.81
RFFL-207ENST00000580569 ZNF831Q5JPB2 1677 aa9.96□□□□□ -0.81
RFFL-207ENST00000580569 GNAT3A8MTJ3 354 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 ELL2O00472 640 aaPredicted RBP9.96□□□□□ -0.82
RFFL-207ENST00000580569 GPR37O15354 613 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 SSFA2P28290 1259 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 PRELPP51888 382 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 SMC5Q8IY18 1101 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 RWDD1Q9H446 243 aaPredicted RBP9.96□□□□□ -0.82
RFFL-207ENST00000580569 PDZRN3Q9UPQ7 1066 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 C10orf71Q711Q0 1435 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 PXDNLA1KZ92 1463 aa9.96□□□□□ -0.82
RFFL-207ENST00000580569 FSTL1Q12841 308 aa9.95□□□□□ -0.82
RFFL-207ENST00000580569 FAM161AQ3B820 660 aa9.95□□□□□ -0.82
RFFL-207ENST00000580569 INTS3Q68E01 1043 aaKnown RBP9.95□□□□□ -0.82
RFFL-207ENST00000580569 AMIGO3Q86WK7 504 aa9.95□□□□□ -0.82
RFFL-207ENST00000580569 ITPRIPQ8IWB1 547 aa9.95□□□□□ -0.82
RFFL-207ENST00000580569 RTF1Q92541 710 aaKnown RBP9.95□□□□□ -0.82
RFFL-207ENST00000580569 SMARCC1Q92922 1105 aaPredicted RBP9.95□□□□□ -0.82
RFFL-207ENST00000580569 LTV1Q96GA3 475 aaPredicted RBP9.95□□□□□ -0.82
RFFL-207ENST00000580569 EMILIN3Q9NT22 766 aa9.95□□□□□ -0.82
RFFL-207ENST00000580569 PLEKHG2Q9H7P9 1386 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 SOS1Q07889 1333 aaPredicted RBP9.94□□□□□ -0.82
RFFL-207ENST00000580569 PCDH11XQ9BZA7 1347 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 PCDH11YQ9BZA8 1340 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.94□□□□□ -0.82
RFFL-207ENST00000580569 TGFB2P61812 414 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 PDIA6Q15084 440 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 USHBP1Q8N6Y0 703 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 API5Q9BZZ5 524 aaKnown RBP9.94□□□□□ -0.82
RFFL-207ENST00000580569 NMRK2Q9NPI5 230 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 MIS18AQ9NYP9 233 aa9.94□□□□□ -0.82
RFFL-207ENST00000580569 CCDC88AQ3V6T2 1871 aa9.93□□□□□ -0.82
RFFL-207ENST00000580569 PTPRCP08575 1304 aa9.93□□□□□ -0.82
RFFL-207ENST00000580569 RGS3P49796 1198 aa9.93□□□□□ -0.82
RFFL-207ENST00000580569 RAPGEF4Q8WZA2 1011 aa9.93□□□□□ -0.82
RFFL-207ENST00000580569 GPHNQ9NQX3 736 aaPredicted RBP9.93□□□□□ -0.82
RFFL-207ENST00000580569 TSPYL4Q9UJ04 414 aa9.93□□□□□ -0.82
RFFL-207ENST00000580569 C4AP0C0L4 1744 aa9.93□□□□□ -0.82
RFFL-207ENST00000580569 COL5A3P25940 1745 aaPredicted RBP9.93□□□□□ -0.82
RFFL-207ENST00000580569 MYH14Q7Z406 1995 aaKnown RBP9.92□□□□□ -0.82
RFFL-207ENST00000580569 SPDYE16A6NNV3 312 aaPredicted RBP9.92□□□□□ -0.82
RFFL-207ENST00000580569 TATP17735 454 aaPredicted RBP9.92□□□□□ -0.82
RFFL-207ENST00000580569 TAF7Q15545 349 aaPredicted RBP9.92□□□□□ -0.82
RFFL-207ENST00000580569 MPRIPQ6WCQ1 1025 aa9.92□□□□□ -0.82
RFFL-207ENST00000580569 SIRT2Q8IXJ6 389 aa9.92□□□□□ -0.82
RFFL-207ENST00000580569 TNS4Q8IZW8 715 aa9.92□□□□□ -0.82
RFFL-207ENST00000580569 WWC3Q9ULE0 1092 aa9.92□□□□□ -0.82
RFFL-207ENST00000580569 CYP27B1O15528 508 aa9.91□□□□□ -0.82
RFFL-207ENST00000580569 TMEM106CQ9BVX2 250 aa9.91□□□□□ -0.82
RFFL-207ENST00000580569 CHMP4BQ9H444 224 aaKnown RBP9.91□□□□□ -0.82
RFFL-207ENST00000580569 HEG1Q9ULI3 1381 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 APBB1O00213 710 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 PHF14O94880 888 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 AMOTQ4VCS5 1084 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 AKAP4Q5JQC9 854 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 G2E3Q7L622 706 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 C16orf71Q8IYS4 520 aaPredicted RBP9.9□□□□□ -0.82
RFFL-207ENST00000580569 CCDC102AQ96A19 550 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 IPO9Q96P70 1041 aaKnown RBP9.9□□□□□ -0.82
RFFL-207ENST00000580569 LGR6Q9HBX8 967 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 BCS1LQ9Y276 419 aa9.9□□□□□ -0.82
RFFL-207ENST00000580569 LOC102724428A0A0B4J2F2 783 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 MMP10P09238 476 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 SIK1P57059 783 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 HTRA3P83110 453 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 NUCB1Q02818 461 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 PLEKHO1Q53GL0 409 aaPredicted RBP9.89□□□□□ -0.83
RFFL-207ENST00000580569 SMIM5Q71RC9 77 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 LINC00116Q8NCU8 138 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 PIGBQ92521 554 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 DDRGK1Q96HY6 314 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 MRC1P22897 1456 aa9.89□□□□□ -0.83
RFFL-207ENST00000580569 LAMB4A4D0S4 1761 aa9.88□□□□□ -0.83
RFFL-207ENST00000580569 UBR2Q8IWV8 1755 aa9.88□□□□□ -0.83
RFFL-207ENST00000580569 KCPQ6ZWJ8 1503 aa9.88□□□□□ -0.83
RFFL-207ENST00000580569 DICER1Q9UPY3 1922 aaKnown RBP9.88□□□□□ -0.83
RFFL-207ENST00000580569 A0A0G2JLW4 131 aa9.88□□□□□ -0.83
RFFL-207ENST00000580569 RNMTO43148 476 aaKnown RBP9.88□□□□□ -0.83
RFFL-207ENST00000580569 ANP32AP39687 249 aaKnown RBP9.88□□□□□ -0.83
RFFL-207ENST00000580569 EIF4A1P60842 406 aaKnown RBP9.88□□□□□ -0.83
RFFL-207ENST00000580569 ARHGAP27Q6ZUM4 889 aa9.88□□□□□ -0.83
RFFL-207ENST00000580569 NLGN1Q8N2Q7 840 aa9.88□□□□□ -0.83
RFFL-207ENST00000580569 PHF12Q96QT6 1004 aa9.88□□□□□ -0.83
RFFL-207ENST00000580569 HOXB7P09629 217 aa9.87□□□□□ -0.83
RFFL-207ENST00000580569 KCNA3P22001 575 aa9.87□□□□□ -0.83
RFFL-207ENST00000580569 FXR2P51116 673 aaKnown RBP eCLIP9.87□□□□□ -0.83
RFFL-207ENST00000580569 DSG2Q14126 1118 aa9.87□□□□□ -0.83
RFFL-207ENST00000580569 C9orf131Q5VYM1 1079 aa9.87□□□□□ -0.83
RFFL-207ENST00000580569 ZNF530Q6P9A1 599 aaPredicted RBP9.87□□□□□ -0.83
RFFL-207ENST00000580569 PARP9Q8IXQ6 854 aa9.87□□□□□ -0.83
RFFL-207ENST00000580569 GCC1Q96CN9 775 aa9.87□□□□□ -0.83
RFFL-207ENST00000580569 DLEC1Q9Y238 1755 aa9.87□□□□□ -0.83
RFFL-207ENST00000580569 KDM6AO15550 1401 aaPredicted RBP9.87□□□□□ -0.83
RFFL-207ENST00000580569 ZC3H4Q9UPT8 1303 aaKnown RBP9.86□□□□□ -0.83
RFFL-207ENST00000580569 GNPATO15228 680 aa9.86□□□□□ -0.83
RFFL-207ENST00000580569 KCNQ3O43525 872 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms