RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 GRM1Q13255 1194 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 NEUROD2Q15784 382 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 PAXIP1Q6ZW49 1069 aaPredicted RBP13.11□□□□□ -0.31
SS18-210ENST00000578700 RTKN2Q8IZC4 609 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 RTF1Q92541 710 aaKnown RBP13.11□□□□□ -0.31
SS18-210ENST00000578700 PHACTR3Q96KR7 559 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 WBP1LQ9NX94 342 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 RCAN3Q9UKA8 241 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 GJA3Q9Y6H8 435 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 ZNF521Q96K83 1311 aa13.11□□□□□ -0.31
SS18-210ENST00000578700 PRKAR2BP31323 418 aa13.1□□□□□ -0.31
SS18-210ENST00000578700 IARSP41252 1262 aaKnown RBP13.1□□□□□ -0.31
SS18-210ENST00000578700 WDR63Q8IWG1 891 aa13.1□□□□□ -0.31
SS18-210ENST00000578700 CDCA7LQ96GN5 454 aa13.1□□□□□ -0.31
SS18-210ENST00000578700 SNRPA1P09661 255 aaKnown RBP13.09□□□□□ -0.31
SS18-210ENST00000578700 ALDH1B1P30837 517 aa13.09□□□□□ -0.31
SS18-210ENST00000578700 MCM10Q7L590 875 aa13.09□□□□□ -0.31
SS18-210ENST00000578700 PNMA8AQ86V59 439 aaPredicted RBP13.09□□□□□ -0.31
SS18-210ENST00000578700 WWC1Q8IX03 1113 aa13.09□□□□□ -0.31
SS18-210ENST00000578700 MYH16Q9H6N6 1097 aa13.09□□□□□ -0.31
SS18-210ENST00000578700 WDR33Q9C0J8 1336 aaKnown RBP13.09□□□□□ -0.31
SS18-210ENST00000578700 TCERG1O14776 1098 aaKnown RBP13.08□□□□□ -0.32
SS18-210ENST00000578700 HSPA8P11142 646 aaKnown RBP13.08□□□□□ -0.32
SS18-210ENST00000578700 CALD1Q05682 793 aaKnown RBP13.08□□□□□ -0.32
SS18-210ENST00000578700 SLFN5Q08AF3 891 aa13.08□□□□□ -0.32
SS18-210ENST00000578700 DCTN1Q14203 1278 aa13.08□□□□□ -0.32
SS18-210ENST00000578700 HLFQ16534 295 aa13.08□□□□□ -0.32
SS18-210ENST00000578700 JDP2Q8WYK2 163 aa13.08□□□□□ -0.32
SS18-210ENST00000578700 RRP7AQ9Y3A4 280 aaKnown RBP13.08□□□□□ -0.32
SS18-210ENST00000578700 ADAMTSL1Q8N6G6 1762 aa13.07□□□□□ -0.32
SS18-210ENST00000578700 FZD9O00144 591 aa13.07□□□□□ -0.32
SS18-210ENST00000578700 EIF6P56537 245 aaKnown RBP13.07□□□□□ -0.32
SS18-210ENST00000578700 MAP2K1Q02750 393 aaPredicted RBP13.07□□□□□ -0.32
SS18-210ENST00000578700 FMR1Q06787 632 aaKnown RBP eCLIP13.07□□□□□ -0.32
SS18-210ENST00000578700 LMOD3Q0VAK6 560 aa13.07□□□□□ -0.32
SS18-210ENST00000578700 NUTM1Q86Y26 1132 aa13.07□□□□□ -0.32
SS18-210ENST00000578700 ABHD8Q96I13 439 aa13.07□□□□□ -0.32
SS18-210ENST00000578700 PLEKHF1Q96S99 279 aa13.07□□□□□ -0.32
SS18-210ENST00000578700 KLRG2A4D1S0 409 aaPredicted RBP13.06□□□□□ -0.32
SS18-210ENST00000578700 RASSF10A6NK89 507 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 CCDC85CA6NKD9 419 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 NBPF26B4DH59 902 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 LMOD1P29536 600 aaPredicted RBP13.06□□□□□ -0.32
SS18-210ENST00000578700 TMPOP42166 694 aaKnown RBP13.06□□□□□ -0.32
SS18-210ENST00000578700 RIPK4P57078 832 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 FAM161AQ3B820 660 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 NBPF10Q6P3W6 841 aaKnown RBP13.06□□□□□ -0.32
SS18-210ENST00000578700 GPC2Q8N158 579 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 NBPF15Q8N660 670 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.06□□□□□ -0.32
SS18-210ENST00000578700 RSPH6AQ9H0K4 717 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 DDX21Q9NR30 783 aaKnown RBP eCLIP13.06□□□□□ -0.32
SS18-210ENST00000578700 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 CEMIPQ8WUJ3 1361 aa13.06□□□□□ -0.32
SS18-210ENST00000578700 DUSP27Q5VZP5 1158 aa13.05□□□□□ -0.32
SS18-210ENST00000578700 BEGAINQ9BUH8 593 aa13.05□□□□□ -0.32
SS18-210ENST00000578700 EPS15P42566 896 aa13.04□□□□□ -0.32
SS18-210ENST00000578700 CYP4F22Q6NT55 531 aa13.04□□□□□ -0.32
SS18-210ENST00000578700 LARGE2Q8N3Y3 721 aa13.04□□□□□ -0.32
SS18-210ENST00000578700 RPGRQ92834 1020 aaKnown RBP13.04□□□□□ -0.32
SS18-210ENST00000578700 GPTP24298 496 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 RRP1P56182 461 aaKnown RBP13.03□□□□□ -0.32
SS18-210ENST00000578700 NFE2L2Q16236 605 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 TRMT2AQ8IZ69 625 aaKnown RBP13.03□□□□□ -0.32
SS18-210ENST00000578700 CAPNS2Q96L46 248 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 CFAP44Q96MT7 982 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 GPR101Q96P66 508 aaPredicted RBP13.03□□□□□ -0.32
SS18-210ENST00000578700 NYXQ9GZU5 481 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 TSKSQ9UJT2 592 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 IL16Q14005 1332 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 TRPM7Q96QT4 1865 aa13.03□□□□□ -0.32
SS18-210ENST00000578700 TRAF5O00463 557 aa13.02□□□□□ -0.33
SS18-210ENST00000578700 MYL6BP14649 208 aa13.02□□□□□ -0.33
SS18-210ENST00000578700 ECE1P42892 770 aa13.02□□□□□ -0.33
SS18-210ENST00000578700 IRX6P78412 446 aaPredicted RBP13.02□□□□□ -0.33
SS18-210ENST00000578700 TAF7Q15545 349 aaPredicted RBP13.02□□□□□ -0.33
SS18-210ENST00000578700 SLC51AQ86UW1 340 aa13.02□□□□□ -0.33
SS18-210ENST00000578700 PSMD1Q99460 953 aa13.02□□□□□ -0.33
SS18-210ENST00000578700 RGL2O15211 777 aa13.01□□□□□ -0.33
SS18-210ENST00000578700 NIM1KQ8IY84 436 aa13.01□□□□□ -0.33
SS18-210ENST00000578700 RBM17Q96I25 401 aaKnown RBP13.01□□□□□ -0.33
SS18-210ENST00000578700 ZBTB3Q9H5J0 574 aa13.01□□□□□ -0.33
SS18-210ENST00000578700 PPP4R2Q9NY27 417 aa13.01□□□□□ -0.33
SS18-210ENST00000578700 NUP98P52948 1817 aa13.01□□□□□ -0.33
SS18-210ENST00000578700 ABCC12Q96J65 1359 aa13□□□□□ -0.33
SS18-210ENST00000578700 AOC2O75106 756 aa13□□□□□ -0.33
SS18-210ENST00000578700 SCNN1DP51172 638 aa13□□□□□ -0.33
SS18-210ENST00000578700 SUSD4Q5VX71 490 aa13□□□□□ -0.33
SS18-210ENST00000578700 CST9Q5W186 159 aa13□□□□□ -0.33
SS18-210ENST00000578700 CC2D2BQ6DHV5 1058 aa13□□□□□ -0.33
SS18-210ENST00000578700 KIF6Q6ZMV9 814 aa13□□□□□ -0.33
SS18-210ENST00000578700 TTLL7Q6ZT98 887 aa13□□□□□ -0.33
SS18-210ENST00000578700 TMX4Q9H1E5 349 aaPredicted RBP13□□□□□ -0.33
SS18-210ENST00000578700 LAMB4A4D0S4 1761 aa12.99□□□□□ -0.33
SS18-210ENST00000578700 PPEF1O14829 653 aaPredicted RBP12.99□□□□□ -0.33
SS18-210ENST00000578700 PPIP5K2O43314 1243 aa12.99□□□□□ -0.33
SS18-210ENST00000578700 CT47B1P0C2W7 299 aaPredicted RBP12.99□□□□□ -0.33
SS18-210ENST00000578700 AOC3Q16853 763 aa12.99□□□□□ -0.33
SS18-210ENST00000578700 CRY2Q49AN0 593 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms