RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 ZNF790Q6PG37 636 aa12.84□□□□□ -0.35
CRLF3-202ENST00000577725 TTLL6Q8N841 843 aa12.84□□□□□ -0.35
CRLF3-202ENST00000577725 TMOD3Q9NYL9 352 aa12.84□□□□□ -0.35
CRLF3-202ENST00000577725 RPS6KA4O75676 772 aa12.83□□□□□ -0.36
CRLF3-202ENST00000577725 HABP4Q5JVS0 413 aaKnown RBP12.83□□□□□ -0.36
CRLF3-202ENST00000577725 HDGFL1Q5TGJ6 251 aa12.83□□□□□ -0.36
CRLF3-202ENST00000577725 ZKSCAN2Q63HK3 967 aa12.83□□□□□ -0.36
CRLF3-202ENST00000577725 PAXIP1Q6ZW49 1069 aaPredicted RBP12.83□□□□□ -0.36
CRLF3-202ENST00000577725 G2E3Q7L622 706 aa12.83□□□□□ -0.36
CRLF3-202ENST00000577725 ZNF428Q96B54 188 aa12.83□□□□□ -0.36
CRLF3-202ENST00000577725 ZNF496Q96IT1 587 aaPredicted RBP12.83□□□□□ -0.36
CRLF3-202ENST00000577725 TRIM27P14373 513 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 GRM1Q13255 1194 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 EAPPQ56P03 285 aaPredicted RBP12.82□□□□□ -0.36
CRLF3-202ENST00000577725 TTC5Q8N0Z6 440 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 NBPF15Q8N660 670 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 L3MBTL3Q96JM7 780 aaPredicted RBP12.82□□□□□ -0.36
CRLF3-202ENST00000577725 CLEC11AQ9Y240 323 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 COG6Q9Y2V7 657 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 KIF16BQ96L93 1317 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 CNTNAP4Q9C0A0 1308 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 LTBP1Q14766 1721 aa12.82□□□□□ -0.36
CRLF3-202ENST00000577725 HEG1Q9ULI3 1381 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 UBR2Q8IWV8 1755 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 POLRMTO00411 1230 aaKnown RBP12.81□□□□□ -0.36
CRLF3-202ENST00000577725 ANXA1P04083 346 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 SLC4A2P04920 1241 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 MAP2K2P36507 400 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 PLCB2Q00722 1185 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 CCDC30Q5VVM6 783 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 CYP4F22Q6NT55 531 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 ATF7IPQ6VMQ6 1270 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 CNTROBQ8N137 903 aa12.81□□□□□ -0.36
CRLF3-202ENST00000577725 BRPF1P55201 1214 aaPredicted RBP12.8□□□□□ -0.36
CRLF3-202ENST00000577725 PDE3AQ14432 1141 aa12.8□□□□□ -0.36
CRLF3-202ENST00000577725 FTSJ3Q8IY81 847 aaKnown RBP12.8□□□□□ -0.36
CRLF3-202ENST00000577725 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
CRLF3-202ENST00000577725 STK31Q9BXU1 1019 aa12.8□□□□□ -0.36
CRLF3-202ENST00000577725 DLL1O00548 723 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 IPO8O15397 1037 aaKnown RBP12.79□□□□□ -0.36
CRLF3-202ENST00000577725 PTCD1O75127 700 aaKnown RBP12.79□□□□□ -0.36
CRLF3-202ENST00000577725 PROSER3Q2NL68 480 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 MAP1SQ66K74 1059 aaPredicted RBP12.79□□□□□ -0.36
CRLF3-202ENST00000577725 B4GALNT3Q6L9W6 998 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 TMEM57Q8N5G2 664 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 FMNL2Q96PY5 1086 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 ATG3Q9NT62 314 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 PPP4R2Q9NY27 417 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 CHPF2Q9P2E5 772 aa12.79□□□□□ -0.36
CRLF3-202ENST00000577725 SRP68Q9UHB9 627 aaKnown RBP12.79□□□□□ -0.36
CRLF3-202ENST00000577725 SOS1Q07889 1333 aaPredicted RBP12.79□□□□□ -0.36
CRLF3-202ENST00000577725 USP42Q9H9J4 1324 aaKnown RBP12.79□□□□□ -0.36
CRLF3-202ENST00000577725 CACNA1FO60840 1977 aa12.78□□□□□ -0.36
CRLF3-202ENST00000577725 HOXB7P09629 217 aa12.78□□□□□ -0.36
CRLF3-202ENST00000577725 TM4SF1P30408 202 aa12.78□□□□□ -0.36
CRLF3-202ENST00000577725 PIP4K2AP48426 406 aaPredicted RBP12.78□□□□□ -0.36
CRLF3-202ENST00000577725 ERICH6BQ5W0A0 696 aa12.78□□□□□ -0.36
CRLF3-202ENST00000577725 PNMA8AQ86V59 439 aaPredicted RBP12.78□□□□□ -0.36
CRLF3-202ENST00000577725 DDX21Q9NR30 783 aaKnown RBP eCLIP12.78□□□□□ -0.36
CRLF3-202ENST00000577725 LAMB4A4D0S4 1761 aa12.78□□□□□ -0.36
CRLF3-202ENST00000577725 ITPRIPQ8IWB1 547 aa12.77□□□□□ -0.37
CRLF3-202ENST00000577725 RBM42Q9BTD8 480 aaKnown RBP12.77□□□□□ -0.37
CRLF3-202ENST00000577725 PHAXQ9H814 394 aaKnown RBP12.77□□□□□ -0.37
CRLF3-202ENST00000577725 HACL1Q9UJ83 578 aa12.77□□□□□ -0.37
CRLF3-202ENST00000577725 USP16Q9Y5T5 823 aa12.77□□□□□ -0.37
CRLF3-202ENST00000577725 LTBP3Q9NS15 1303 aa12.77□□□□□ -0.37
CRLF3-202ENST00000577725 F6X3S4 739 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 H0YIN7 160 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 AOC2O75106 756 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 SNRPA1P09661 255 aaKnown RBP12.76□□□□□ -0.37
CRLF3-202ENST00000577725 EPHX2P34913 555 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 FLIIQ13045 1269 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 C2CD5Q86YS7 1000 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 SLC4A9Q96Q91 983 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 API5Q9BZZ5 524 aaKnown RBP12.76□□□□□ -0.37
CRLF3-202ENST00000577725 TAOK3Q9H2K8 898 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 ABCC4O15439 1325 aa12.76□□□□□ -0.37
CRLF3-202ENST00000577725 MS4A1P11836 297 aa12.75□□□□□ -0.37
CRLF3-202ENST00000577725 MVPQ14764 893 aaKnown RBP12.75□□□□□ -0.37
CRLF3-202ENST00000577725 ARHGAP45Q92619 1136 aa12.75□□□□□ -0.37
CRLF3-202ENST00000577725 SCN4AP35499 1836 aa12.74□□□□□ -0.37
CRLF3-202ENST00000577725 ADAMTSL1Q8N6G6 1762 aa12.74□□□□□ -0.37
CRLF3-202ENST00000577725 PTPRCP08575 1304 aa12.74□□□□□ -0.37
CRLF3-202ENST00000577725 C21orf2O43822 256 aa12.74□□□□□ -0.37
CRLF3-202ENST00000577725 MYL6BP14649 208 aa12.74□□□□□ -0.37
CRLF3-202ENST00000577725 FKBP5Q13451 457 aaPredicted RBP12.74□□□□□ -0.37
CRLF3-202ENST00000577725 PDIA6Q15084 440 aa12.74□□□□□ -0.37
CRLF3-202ENST00000577725 DNAJC10Q8IXB1 793 aa12.74□□□□□ -0.37
CRLF3-202ENST00000577725 FXR1P51114 621 aaKnown RBP eCLIP12.73□□□□□ -0.37
CRLF3-202ENST00000577725 SLC4A10Q6U841 1118 aa12.73□□□□□ -0.37
CRLF3-202ENST00000577725 CCDC136Q96JN2 1154 aa12.73□□□□□ -0.37
CRLF3-202ENST00000577725 TLL2Q9Y6L7 1015 aa12.73□□□□□ -0.37
CRLF3-202ENST00000577725 TJP1Q07157 1748 aa12.73□□□□□ -0.37
CRLF3-202ENST00000577725 ZNF831Q5JPB2 1677 aa12.73□□□□□ -0.37
CRLF3-202ENST00000577725 CCDC88AQ3V6T2 1871 aa12.72□□□□□ -0.37
CRLF3-202ENST00000577725 DLEC1Q9Y238 1755 aa12.72□□□□□ -0.37
CRLF3-202ENST00000577725 A1BGP04217 495 aa12.72□□□□□ -0.37
CRLF3-202ENST00000577725 AIMP1Q12904 312 aaKnown RBP12.72□□□□□ -0.37
CRLF3-202ENST00000577725 DBF4Q9UBU7 674 aaPredicted RBP12.72□□□□□ -0.37
CRLF3-202ENST00000577725 NBPF26B4DH59 902 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms