RNA–Protein interactions for RNA: ENST00000575507.1

EDC4-210, Transcript of enhancer of mRNA decapping 4, human

TSL 2

Gene EDC4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EDC4-210	ENST00000575507	ANKRD13D	Q6ZTN6	518 aa		18.39	■□□□□ 0.53
EDC4-210	ENST00000575507	PLBD2	Q8NHP8	589 aa		18.39	■□□□□ 0.53
EDC4-210	ENST00000575507	UTP14A	Q9BVJ6	771 aa	Known RBP	18.39	■□□□□ 0.53
EDC4-210	ENST00000575507	RRAGC	Q9HB90	399 aa		18.39	■□□□□ 0.53
EDC4-210	ENST00000575507	SALL2	Q9Y467	1007 aa	Predicted RBP	18.39	■□□□□ 0.53
EDC4-210	ENST00000575507	SBF1	O95248	1867 aa		18.39	■□□□□ 0.53
EDC4-210	ENST00000575507	HOXA10	P31260	410 aa	Predicted RBP	18.38	■□□□□ 0.53
EDC4-210	ENST00000575507	HYPK	Q9NX55	129 aa		18.38	■□□□□ 0.53
EDC4-210	ENST00000575507	LTBP3	Q9NS15	1303 aa		18.38	■□□□□ 0.53
EDC4-210	ENST00000575507	ALDH1B1	P30837	517 aa		18.37	■□□□□ 0.53
EDC4-210	ENST00000575507	GLTPD2	A6NH11	291 aa		18.36	■□□□□ 0.53
EDC4-210	ENST00000575507	ATP5J2-PTCD1	G3V325	749 aa		18.36	■□□□□ 0.53
EDC4-210	ENST00000575507	HCLS1	P14317	486 aa	Predicted RBP	18.36	■□□□□ 0.53
EDC4-210	ENST00000575507	RIC1	Q4ADV7	1423 aa		18.36	■□□□□ 0.53
EDC4-210	ENST00000575507	ISCA1	Q9BUE6	129 aa		18.36	■□□□□ 0.53
EDC4-210	ENST00000575507	TAOK3	Q9H2K8	898 aa		18.36	■□□□□ 0.53
EDC4-210	ENST00000575507	POTEC	B2RU33	542 aa		18.35	■□□□□ 0.53
EDC4-210	ENST00000575507	TCERG1	O14776	1098 aa	Known RBP	18.35	■□□□□ 0.53
EDC4-210	ENST00000575507	CCDC93	Q567U6	631 aa		18.35	■□□□□ 0.53
EDC4-210	ENST00000575507	HSP90AB3P	Q58FF7	597 aa		18.35	■□□□□ 0.53
EDC4-210	ENST00000575507	FAM9B	Q8IZU0	186 aa		18.35	■□□□□ 0.53
EDC4-210	ENST00000575507	TRMT112	Q9UI30	125 aa	Known RBP	18.35	■□□□□ 0.53
EDC4-210	ENST00000575507	SNED1	Q8TER0	1413 aa		18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	KDM2B	Q8NHM5	1336 aa		18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	TOMM70	O94826	608 aa		18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	NCBP3	Q53F19	620 aa	Known RBP	18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	SOGA3	Q5TF21	947 aa		18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	DIEXF	Q68CQ4	756 aa	Known RBP	18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	RPGR	Q92834	1020 aa	Known RBP	18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	NLRP3	Q96P20	1036 aa		18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	CRAMP1	Q96RY5	1269 aa		18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	SPINK5	Q9NQ38	1064 aa	Predicted RBP	18.34	■□□□□ 0.53
EDC4-210	ENST00000575507	FER1L6	Q2WGJ9	1857 aa		18.33	■□□□□ 0.53
EDC4-210	ENST00000575507	ZC3H4	Q9UPT8	1303 aa	Known RBP	18.33	■□□□□ 0.53
EDC4-210	ENST00000575507	FKBP4	Q02790	459 aa	Known RBP eCLIP	18.33	■□□□□ 0.52
EDC4-210	ENST00000575507	ZNF277	Q9NRM2	450 aa	Predicted RBP	18.33	■□□□□ 0.52
EDC4-210	ENST00000575507	IL16	Q14005	1332 aa		18.32	■□□□□ 0.52
EDC4-210	ENST00000575507	FAM89A	Q96GI7	184 aa		18.32	■□□□□ 0.52
EDC4-210	ENST00000575507	RBM17	Q96I25	401 aa	Known RBP	18.32	■□□□□ 0.52
EDC4-210	ENST00000575507	SH3TC1	Q8TE82	1336 aa		18.31	■□□□□ 0.52
EDC4-210	ENST00000575507	TRIM28	Q13263	835 aa	Known RBP	18.31	■□□□□ 0.52
EDC4-210	ENST00000575507	CCDC30	Q5VVM6	783 aa		18.31	■□□□□ 0.52
EDC4-210	ENST00000575507	RIC3	Q7Z5B4	369 aa		18.31	■□□□□ 0.52
EDC4-210	ENST00000575507	RTKN2	Q8IZC4	609 aa		18.31	■□□□□ 0.52
EDC4-210	ENST00000575507	ARFGEF2	Q9Y6D5	1785 aa		18.31	■□□□□ 0.52
EDC4-210	ENST00000575507	CACNA1S	Q13698	1873 aa		18.31	■□□□□ 0.52
EDC4-210	ENST00000575507	RNF123	Q5XPI4	1314 aa		18.3	■□□□□ 0.52
EDC4-210	ENST00000575507	DDN	O94850	711 aa	Predicted RBP	18.3	■□□□□ 0.52
EDC4-210	ENST00000575507	TWISTNB	Q3B726	338 aa	Predicted RBP	18.3	■□□□□ 0.52
EDC4-210	ENST00000575507	RTL5	Q5HYW3	569 aa	Predicted RBP	18.3	■□□□□ 0.52
EDC4-210	ENST00000575507	G2E3	Q7L622	706 aa		18.3	■□□□□ 0.52
EDC4-210	ENST00000575507	WDR63	Q8IWG1	891 aa		18.3	■□□□□ 0.52
EDC4-210	ENST00000575507	PPEF1	O14829	653 aa	Predicted RBP	18.29	■□□□□ 0.52
EDC4-210	ENST00000575507	HSPA6	P17066	643 aa		18.29	■□□□□ 0.52
EDC4-210	ENST00000575507	DPY19L2	Q6NUT2	758 aa		18.29	■□□□□ 0.52
EDC4-210	ENST00000575507	ABCC4	O15439	1325 aa		18.28	■□□□□ 0.52
EDC4-210	ENST00000575507	FANCI	Q9NVI1	1328 aa		18.28	■□□□□ 0.52
EDC4-210	ENST00000575507	VEGFA	P15692	232 aa	Predicted RBP	18.28	■□□□□ 0.52
EDC4-210	ENST00000575507	JARID2	Q92833	1246 aa	Predicted RBP	18.28	■□□□□ 0.52
EDC4-210	ENST00000575507	PSMD1	Q99460	953 aa		18.28	■□□□□ 0.52
EDC4-210	ENST00000575507	MYD88	Q99836	296 aa		18.28	■□□□□ 0.52
EDC4-210	ENST00000575507	VAMP4	O75379	141 aa		18.27	■□□□□ 0.52
EDC4-210	ENST00000575507	IARS	P41252	1262 aa	Known RBP	18.27	■□□□□ 0.52
EDC4-210	ENST00000575507	GOLGA2	Q08379	1002 aa		18.27	■□□□□ 0.52
EDC4-210	ENST00000575507	RBM46	Q8TBY0	533 aa	Known RBP	18.27	■□□□□ 0.52
EDC4-210	ENST00000575507	ANKRD36C	Q5JPF3	1778 aa		18.27	■□□□□ 0.51
EDC4-210	ENST00000575507	CCDC88A	Q3V6T2	1871 aa		18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	TIAM2	Q8IVF5	1701 aa		18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	SLC4A2	P04920	1241 aa		18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	EXOSC9	Q06265	439 aa	Known RBP	18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	CC2D2B	Q6DHV5	1058 aa		18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	METTL22	Q9BUU2	404 aa	Predicted RBP	18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	MAP3K2	Q9Y2U5	619 aa		18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	ATP6V0A2	Q9Y487	856 aa		18.26	■□□□□ 0.51
EDC4-210	ENST00000575507	ZNF541	Q9H0D2	1346 aa		18.25	■□□□□ 0.51
EDC4-210	ENST00000575507	COL4A5	P29400	1685 aa		18.25	■□□□□ 0.51
EDC4-210	ENST00000575507	PI4KAP2	A4QPH2	592 aa		18.25	■□□□□ 0.51
EDC4-210	ENST00000575507	FZD9	O00144	591 aa		18.25	■□□□□ 0.51
EDC4-210	ENST00000575507	SF3B3	Q15393	1217 aa	Known RBP	18.25	■□□□□ 0.51
EDC4-210	ENST00000575507	C16orf71	Q8IYS4	520 aa	Predicted RBP	18.25	■□□□□ 0.51
EDC4-210	ENST00000575507	PI4KAP1	Q8N8J0	262 aa		18.25	■□□□□ 0.51
EDC4-210	ENST00000575507	IRS4	O14654	1257 aa	Predicted RBP	18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	BBOX1	O75936	387 aa		18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	IGKV5-2	P06315	115 aa		18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	GRAP	Q13588	217 aa		18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	KSR2	Q6VAB6	950 aa		18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	SP8	Q8IXZ3	490 aa		18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	GRAPL	Q8TC17	118 aa	Predicted RBP	18.24	■□□□□ 0.51
EDC4-210	ENST00000575507	COL4A1	P02462	1669 aa		18.23	■□□□□ 0.51
EDC4-210	ENST00000575507	POTEI	P0CG38	1075 aa		18.23	■□□□□ 0.51
EDC4-210	ENST00000575507	POTEJ	P0CG39	1038 aa		18.23	■□□□□ 0.51
EDC4-210	ENST00000575507	DDX46	Q7L014	1031 aa	Known RBP	18.23	■□□□□ 0.51
EDC4-210	ENST00000575507	CCDC191	Q8NCU4	936 aa		18.23	■□□□□ 0.51
EDC4-210	ENST00000575507	CELF1	Q92879	486 aa	Known RBP	18.23	■□□□□ 0.51
EDC4-210	ENST00000575507	ZNF521	Q96K83	1311 aa		18.23	■□□□□ 0.51
EDC4-210	ENST00000575507	STK31	Q9BXU1	1019 aa		18.22	■□□□□ 0.51
EDC4-210	ENST00000575507	CHMP4A	Q9BY43	222 aa		18.22	■□□□□ 0.51
EDC4-210	ENST00000575507	DDX58	O95786	925 aa	Known RBP	18.21	■□□□□ 0.51
EDC4-210	ENST00000575507	PCCA	P05165	728 aa	Predicted RBP	18.21	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms