RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NBPF5PQ86XG9 351 aaPredicted RBP21.64■■□□□ 1.05
NUP88-210ENST00000574867 SERPINB2P05120 415 aa21.63■■□□□ 1.05
NUP88-210ENST00000574867 PTGER2P43116 358 aa21.63■■□□□ 1.05
NUP88-210ENST00000574867 CWF19L2Q2TBE0 894 aaKnown RBP21.63■■□□□ 1.05
NUP88-210ENST00000574867 DZIP1LQ8IYY4 767 aaKnown RBP21.63■■□□□ 1.05
NUP88-210ENST00000574867 LRP5O75197 1615 aa21.62■■□□□ 1.05
NUP88-210ENST00000574867 RRP1P56182 461 aaKnown RBP21.62■■□□□ 1.05
NUP88-210ENST00000574867 SUSD4Q5VX71 490 aa21.62■■□□□ 1.05
NUP88-210ENST00000574867 TPTE2Q6XPS3 522 aa21.62■■□□□ 1.05
NUP88-210ENST00000574867 CNBD1Q8NA66 436 aa21.62■■□□□ 1.05
NUP88-210ENST00000574867 CLUAP1Q96AJ1 413 aa21.62■■□□□ 1.05
NUP88-210ENST00000574867 UTP14AQ9BVJ6 771 aaKnown RBP21.62■■□□□ 1.05
NUP88-210ENST00000574867 NTSR2O95665 410 aa21.61■■□□□ 1.05
NUP88-210ENST00000574867 INTS3Q68E01 1043 aaKnown RBP21.61■■□□□ 1.05
NUP88-210ENST00000574867 NPHP1O15259 732 aa21.6■■□□□ 1.05
NUP88-210ENST00000574867 GCKRQ14397 625 aa21.6■■□□□ 1.05
NUP88-210ENST00000574867 PLIN1O60240 522 aa21.6■■□□□ 1.05
NUP88-210ENST00000574867 TRMT112Q9UI30 125 aaKnown RBP21.6■■□□□ 1.05
NUP88-210ENST00000574867 TNNQ9UQP3 1299 aa21.6■■□□□ 1.05
NUP88-210ENST00000574867 LAMB2P55268 1798 aa21.6■■□□□ 1.05
NUP88-210ENST00000574867 PDE3AQ14432 1141 aa21.59■■□□□ 1.05
NUP88-210ENST00000574867 RIC1Q4ADV7 1423 aa21.59■■□□□ 1.05
NUP88-210ENST00000574867 SH3TC1Q8TE82 1336 aa21.59■■□□□ 1.05
NUP88-210ENST00000574867 FAM177BA6PVY3 158 aa21.59■■□□□ 1.05
NUP88-210ENST00000574867 GTF2E1P29083 439 aaPredicted RBP21.59■■□□□ 1.05
NUP88-210ENST00000574867 ST5P78524 1137 aa21.59■■□□□ 1.05
NUP88-210ENST00000574867 PRR5LQ6MZQ0 368 aa21.59■■□□□ 1.05
NUP88-210ENST00000574867 ZBTB38Q8NAP3 1195 aaPredicted RBP21.59■■□□□ 1.05
NUP88-210ENST00000574867 C10orf71Q711Q0 1435 aa21.58■■□□□ 1.05
NUP88-210ENST00000574867 KIF13BQ9NQT8 1826 aa21.58■■□□□ 1.05
NUP88-210ENST00000574867 PCCAP05165 728 aaPredicted RBP21.58■■□□□ 1.05
NUP88-210ENST00000574867 TMEM57Q8N5G2 664 aa21.57■■□□□ 1.04
NUP88-210ENST00000574867 RLBP1P12271 317 aa21.56■■□□□ 1.04
NUP88-210ENST00000574867 GRM8O00222 908 aa21.56■■□□□ 1.04
NUP88-210ENST00000574867 HSP90B1P14625 803 aaKnown RBP21.56■■□□□ 1.04
NUP88-210ENST00000574867 C9orf78Q9NZ63 289 aaPredicted RBP21.56■■□□□ 1.04
NUP88-210ENST00000574867 DDX60Q8IY21 1712 aaKnown RBP21.55■■□□□ 1.04
NUP88-210ENST00000574867 ABCC12Q96J65 1359 aa21.55■■□□□ 1.04
NUP88-210ENST00000574867 CDHR2Q9BYE9 1310 aa21.55■■□□□ 1.04
NUP88-210ENST00000574867 NUTM1Q86Y26 1132 aa21.55■■□□□ 1.04
NUP88-210ENST00000574867 PANK1Q8TE04 598 aa21.55■■□□□ 1.04
NUP88-210ENST00000574867 FAM89AQ96GI7 184 aa21.55■■□□□ 1.04
NUP88-210ENST00000574867 SUPT16HQ9Y5B9 1047 aaKnown RBP21.55■■□□□ 1.04
NUP88-210ENST00000574867 ANKRD31Q8N7Z5 1873 aa21.55■■□□□ 1.04
NUP88-210ENST00000574867 H7C1W4 665 aa21.54■■□□□ 1.04
NUP88-210ENST00000574867 ERFEQ4G0M1 354 aa21.54■■□□□ 1.04
NUP88-210ENST00000574867 ITPRIPQ8IWB1 547 aa21.54■■□□□ 1.04
NUP88-210ENST00000574867 UTYO14607 1347 aa21.54■■□□□ 1.04
NUP88-210ENST00000574867 UBE3BQ7Z3V4 1068 aa21.54■■□□□ 1.04
NUP88-210ENST00000574867 TNRC6CQ9HCJ0 1690 aaKnown RBP21.53■■□□□ 1.04
NUP88-210ENST00000574867 SLC10A5Q5PT55 438 aa21.52■■□□□ 1.04
NUP88-210ENST00000574867 BRIP1Q9BX63 1249 aa21.52■■□□□ 1.04
NUP88-210ENST00000574867 MVPQ14764 893 aaKnown RBP21.52■■□□□ 1.04
NUP88-210ENST00000574867 USP44Q9H0E7 712 aa21.52■■□□□ 1.04
NUP88-210ENST00000574867 MYH3P11055 1940 aa21.51■■□□□ 1.03
NUP88-210ENST00000574867 IRS4O14654 1257 aaPredicted RBP21.51■■□□□ 1.03
NUP88-210ENST00000574867 CASP7P55210 303 aa21.51■■□□□ 1.03
NUP88-210ENST00000574867 RTL5Q5HYW3 569 aaPredicted RBP21.51■■□□□ 1.03
NUP88-210ENST00000574867 C20orf194Q5TEA3 1177 aa21.51■■□□□ 1.03
NUP88-210ENST00000574867 PPP1R1BQ9UD71 204 aaPredicted RBP21.51■■□□□ 1.03
NUP88-210ENST00000574867 DDX19BQ9UMR2 479 aa21.51■■□□□ 1.03
NUP88-210ENST00000574867 HDAC5Q9UQL6 1122 aa21.51■■□□□ 1.03
NUP88-210ENST00000574867 CD2APQ9Y5K6 639 aa21.51■■□□□ 1.03
NUP88-210ENST00000574867 GNAI3P08754 354 aa21.5■■□□□ 1.03
NUP88-210ENST00000574867 NBPF7P0C2Y1 421 aaPredicted RBP21.5■■□□□ 1.03
NUP88-210ENST00000574867 PDE6BP35913 854 aa21.5■■□□□ 1.03
NUP88-210ENST00000574867 SYNE4Q8N205 404 aa21.5■■□□□ 1.03
NUP88-210ENST00000574867 CCDC24Q8N4L8 307 aa21.5■■□□□ 1.03
NUP88-210ENST00000574867 PDZRN3Q9UPQ7 1066 aa21.5■■□□□ 1.03
NUP88-210ENST00000574867 COG6Q9Y2V7 657 aa21.49■■□□□ 1.03
NUP88-210ENST00000574867 UBTFL1P0CB47 393 aaPredicted RBP21.49■■□□□ 1.03
NUP88-210ENST00000574867 PLA2G12BQ9BX93 195 aa21.49■■□□□ 1.03
NUP88-210ENST00000574867 CHMP4BQ9H444 224 aaKnown RBP21.49■■□□□ 1.03
NUP88-210ENST00000574867 COL11A2P13942 1736 aaPredicted RBP21.48■■□□□ 1.03
NUP88-210ENST00000574867 KIAA1551Q9HCM1 1747 aa21.48■■□□□ 1.03
NUP88-210ENST00000574867 DLEC1Q9Y238 1755 aa21.48■■□□□ 1.03
NUP88-210ENST00000574867 PDE8AO60658 829 aa21.48■■□□□ 1.03
NUP88-210ENST00000574867 HCLS1P14317 486 aaPredicted RBP21.48■■□□□ 1.03
NUP88-210ENST00000574867 JARID2Q92833 1246 aaPredicted RBP21.48■■□□□ 1.03
NUP88-210ENST00000574867 NLRP3Q96P20 1036 aa21.48■■□□□ 1.03
NUP88-210ENST00000574867 MEIS3Q99687 375 aa21.48■■□□□ 1.03
NUP88-210ENST00000574867 KLRG2A4D1S0 409 aaPredicted RBP21.47■■□□□ 1.03
NUP88-210ENST00000574867 TGFB2P61812 414 aa21.46■■□□□ 1.03
NUP88-210ENST00000574867 ZBTB7BO15156 539 aaPredicted RBP21.46■■□□□ 1.03
NUP88-210ENST00000574867 CRY2Q49AN0 593 aa21.46■■□□□ 1.03
NUP88-210ENST00000574867 KLHL34Q8N239 644 aa21.46■■□□□ 1.03
NUP88-210ENST00000574867 CTSWP56202 376 aa21.45■■□□□ 1.02
NUP88-210ENST00000574867 SUCLG2Q96I99 432 aa21.44■■□□□ 1.02
NUP88-210ENST00000574867 FHDC1Q9C0D6 1143 aaPredicted RBP21.44■■□□□ 1.02
NUP88-210ENST00000574867 SF3B3Q15393 1217 aaKnown RBP21.44■■□□□ 1.02
NUP88-210ENST00000574867 H0YIN7 160 aa21.43■■□□□ 1.02
NUP88-210ENST00000574867 GNAI2P04899 355 aa21.43■■□□□ 1.02
NUP88-210ENST00000574867 CCDC152Q4G0S7 254 aa21.43■■□□□ 1.02
NUP88-210ENST00000574867 C3orf67Q6ZVT6 689 aa21.43■■□□□ 1.02
NUP88-210ENST00000574867 C2CD5Q86YS7 1000 aa21.43■■□□□ 1.02
NUP88-210ENST00000574867 SRGNP10124 158 aa21.42■■□□□ 1.02
NUP88-210ENST00000574867 FOXO4P98177 505 aa21.42■■□□□ 1.02
NUP88-210ENST00000574867 RPGRQ92834 1020 aaKnown RBP21.42■■□□□ 1.02
NUP88-210ENST00000574867 KAZALD1Q96I82 304 aa21.42■■□□□ 1.02
NUP88-210ENST00000574867 LRRFIP2Q9Y608 721 aaKnown RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms