RNA–Protein interactions for RNA: ENST00000574095.1

NPLOC4-215, Transcript of NPL4 homolog, ubiquitin recognition factor, human

TSL 3

Gene NPLOC4, Length 277 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPLOC4-215	ENST00000574095	OLFM4	Q6UX06	510 aa		33.83	■■■■□ 3.01
NPLOC4-215	ENST00000574095	DBF4	Q9UBU7	674 aa	Predicted RBP	33.83	■■■■□ 3.01
NPLOC4-215	ENST00000574095	ELL2	O00472	640 aa	Predicted RBP	33.82	■■■■□ 3
NPLOC4-215	ENST00000574095	CCDC93	Q567U6	631 aa		33.82	■■■■□ 3
NPLOC4-215	ENST00000574095	HSP90AB3P	Q58FF7	597 aa		33.82	■■■■□ 3
NPLOC4-215	ENST00000574095	UTP14A	Q9BVJ6	771 aa	Known RBP	33.82	■■■■□ 3
NPLOC4-215	ENST00000574095	RIC1	Q4ADV7	1423 aa		33.8	■■■■□ 3
NPLOC4-215	ENST00000574095	GLTPD2	A6NH11	291 aa		33.8	■■■■□ 3
NPLOC4-215	ENST00000574095	TCIRG1	Q13488	830 aa		33.8	■■■■□ 3
NPLOC4-215	ENST00000574095	RPGR	Q92834	1020 aa	Known RBP	33.8	■■■■□ 3
NPLOC4-215	ENST00000574095	C3orf67	Q6ZVT6	689 aa		33.79	■■■■□ 3
NPLOC4-215	ENST00000574095	C16orf71	Q8IYS4	520 aa	Predicted RBP	33.79	■■■■□ 3
NPLOC4-215	ENST00000574095	NLRP10	Q86W26	655 aa		33.78	■■■■□ 3
NPLOC4-215	ENST00000574095	HSPA6	P17066	643 aa		33.77	■■■■□ 3
NPLOC4-215	ENST00000574095	ANKRD13D	Q6ZTN6	518 aa		33.77	■■■■□ 3
NPLOC4-215	ENST00000574095	C8orf58	Q8NAV2	365 aa		33.77	■■■■□ 3
NPLOC4-215	ENST00000574095	HYPK	Q9NX55	129 aa		33.77	■■■■□ 3
NPLOC4-215	ENST00000574095	HOXA10	P31260	410 aa	Predicted RBP	33.76	■■■□□ 2.99
NPLOC4-215	ENST00000574095	SLC10A5	Q5PT55	438 aa		33.76	■■■□□ 2.99
NPLOC4-215	ENST00000574095	PLBD2	Q8NHP8	589 aa		33.76	■■■□□ 2.99
NPLOC4-215	ENST00000574095	ZNF428	Q96B54	188 aa		33.76	■■■□□ 2.99
NPLOC4-215	ENST00000574095	NLRP3	Q96P20	1036 aa		33.76	■■■□□ 2.99
NPLOC4-215	ENST00000574095	FKBP4	Q02790	459 aa	Known RBP eCLIP	33.74	■■■□□ 2.99
NPLOC4-215	ENST00000574095	DPY19L2	Q6NUT2	758 aa		33.74	■■■□□ 2.99
NPLOC4-215	ENST00000574095	RTKN2	Q8IZC4	609 aa		33.74	■■■□□ 2.99
NPLOC4-215	ENST00000574095	SYNE4	Q8N205	404 aa		33.74	■■■□□ 2.99
NPLOC4-215	ENST00000574095	RBM17	Q96I25	401 aa	Known RBP	33.74	■■■□□ 2.99
NPLOC4-215	ENST00000574095	CCDC27	Q2M243	656 aa		33.73	■■■□□ 2.99
NPLOC4-215	ENST00000574095	RBM46	Q8TBY0	533 aa	Known RBP	33.73	■■■□□ 2.99
NPLOC4-215	ENST00000574095	TRMT112	Q9UI30	125 aa	Known RBP	33.73	■■■□□ 2.99
NPLOC4-215	ENST00000574095	WWC1	Q8IX03	1113 aa		33.72	■■■□□ 2.99
NPLOC4-215	ENST00000574095	CRAMP1	Q96RY5	1269 aa		33.72	■■■□□ 2.99
NPLOC4-215	ENST00000574095	ZNF277	Q9NRM2	450 aa	Predicted RBP	33.72	■■■□□ 2.99
NPLOC4-215	ENST00000574095	TSR2	Q969E8	191 aa	Known RBP	33.71	■■■□□ 2.99
NPLOC4-215	ENST00000574095	RNF123	Q5XPI4	1314 aa		33.71	■■■□□ 2.99
NPLOC4-215	ENST00000574095	HCLS1	P14317	486 aa	Predicted RBP	33.7	■■■□□ 2.99
NPLOC4-215	ENST00000574095	VEGFA	P15692	232 aa	Predicted RBP	33.7	■■■□□ 2.99
NPLOC4-215	ENST00000574095	PHAX	Q9H814	394 aa	Known RBP	33.7	■■■□□ 2.99
NPLOC4-215	ENST00000574095	ATP5J2-PTCD1	G3V325	749 aa		33.69	■■■□□ 2.98
NPLOC4-215	ENST00000574095	TCERG1	O14776	1098 aa	Known RBP	33.69	■■■□□ 2.98
NPLOC4-215	ENST00000574095	TSPYL6	Q8N831	410 aa		33.69	■■■□□ 2.98
NPLOC4-215	ENST00000574095	ISCA1	Q9BUE6	129 aa		33.69	■■■□□ 2.98
NPLOC4-215	ENST00000574095	LAMB2	P55268	1798 aa		33.68	■■■□□ 2.98
NPLOC4-215	ENST00000574095	CEP350	Q5VT06	3117 aa		33.68	■■■□□ 2.98
NPLOC4-215	ENST00000574095	SLC51A	Q86UW1	340 aa		33.67	■■■□□ 2.98
NPLOC4-215	ENST00000574095	SALL2	Q9Y467	1007 aa	Predicted RBP	33.67	■■■□□ 2.98
NPLOC4-215	ENST00000574095	SH3TC1	Q8TE82	1336 aa		33.67	■■■□□ 2.98
NPLOC4-215	ENST00000574095	POTEC	B2RU33	542 aa		33.66	■■■□□ 2.98
NPLOC4-215	ENST00000574095	PPEF1	O14829	653 aa	Predicted RBP	33.66	■■■□□ 2.98
NPLOC4-215	ENST00000574095	DDN	O94850	711 aa	Predicted RBP	33.66	■■■□□ 2.98
NPLOC4-215	ENST00000574095	CC2D2B	Q6DHV5	1058 aa		33.66	■■■□□ 2.98
NPLOC4-215	ENST00000574095	RIC3	Q7Z5B4	369 aa		33.66	■■■□□ 2.98
NPLOC4-215	ENST00000574095	SNED1	Q8TER0	1413 aa		33.66	■■■□□ 2.98
NPLOC4-215	ENST00000574095	WDR90	Q96KV7	1748 aa		33.65	■■■□□ 2.98
NPLOC4-215	ENST00000574095	IARS	P41252	1262 aa	Known RBP	33.64	■■■□□ 2.98
NPLOC4-215	ENST00000574095	CCDC30	Q5VVM6	783 aa		33.64	■■■□□ 2.98
NPLOC4-215	ENST00000574095	ABCC4	O15439	1325 aa		33.63	■■■□□ 2.97
NPLOC4-215	ENST00000574095	GOLGA2	Q08379	1002 aa		33.63	■■■□□ 2.97
NPLOC4-215	ENST00000574095	NCBP3	Q53F19	620 aa	Known RBP	33.63	■■■□□ 2.97
NPLOC4-215	ENST00000574095	PSMD1	Q99460	953 aa		33.63	■■■□□ 2.97
NPLOC4-215	ENST00000574095	FSTL1	Q12841	308 aa		33.62	■■■□□ 2.97
NPLOC4-215	ENST00000574095	FAM89A	Q96GI7	184 aa		33.62	■■■□□ 2.97
NPLOC4-215	ENST00000574095	FAM9B	Q8IZU0	186 aa		33.61	■■■□□ 2.97
NPLOC4-215	ENST00000574095	IL16	Q14005	1332 aa		33.6	■■■□□ 2.97
NPLOC4-215	ENST00000574095	CHMP4A	Q9BY43	222 aa		33.6	■■■□□ 2.97
NPLOC4-215	ENST00000574095	DDX60	Q8IY21	1712 aa	Known RBP	33.59	■■■□□ 2.97
NPLOC4-215	ENST00000574095	RTL5	Q5HYW3	569 aa	Predicted RBP	33.59	■■■□□ 2.97
NPLOC4-215	ENST00000574095	APLP1	P51693	650 aa		33.58	■■■□□ 2.97
NPLOC4-215	ENST00000574095	TRIM28	Q13263	835 aa	Known RBP	33.58	■■■□□ 2.97
NPLOC4-215	ENST00000574095	GRIPAP1	Q4V328	841 aa		33.58	■■■□□ 2.97
NPLOC4-215	ENST00000574095	SMC1B	Q8NDV3	1235 aa		33.58	■■■□□ 2.97
NPLOC4-215	ENST00000574095	MYD88	Q99836	296 aa		33.58	■■■□□ 2.97
NPLOC4-215	ENST00000574095	ATP6V0A2	Q9Y487	856 aa		33.58	■■■□□ 2.97
NPLOC4-215	ENST00000574095	TAF1	P21675	1872 aa		33.58	■■■□□ 2.97
NPLOC4-215	ENST00000574095	TWISTNB	Q3B726	338 aa	Predicted RBP	33.57	■■■□□ 2.96
NPLOC4-215	ENST00000574095	DDX46	Q7L014	1031 aa	Known RBP	33.57	■■■□□ 2.96
NPLOC4-215	ENST00000574095	ZNF541	Q9H0D2	1346 aa		33.56	■■■□□ 2.96
NPLOC4-215	ENST00000574095	TMX4	Q9H1E5	349 aa	Predicted RBP	33.56	■■■□□ 2.96
NPLOC4-215	ENST00000574095	BBOX1	O75936	387 aa		33.55	■■■□□ 2.96
NPLOC4-215	ENST00000574095	FZD9	O00144	591 aa		33.54	■■■□□ 2.96
NPLOC4-215	ENST00000574095	JDP2	Q8WYK2	163 aa		33.54	■■■□□ 2.96
NPLOC4-215	ENST00000574095	DDX58	O95786	925 aa	Known RBP	33.53	■■■□□ 2.96
NPLOC4-215	ENST00000574095	GRAP	Q13588	217 aa		33.53	■■■□□ 2.96
NPLOC4-215	ENST00000574095	WDR63	Q8IWG1	891 aa		33.53	■■■□□ 2.96
NPLOC4-215	ENST00000574095	GRAPL	Q8TC17	118 aa	Predicted RBP	33.53	■■■□□ 2.96
NPLOC4-215	ENST00000574095	STK31	Q9BXU1	1019 aa		33.53	■■■□□ 2.96
NPLOC4-215	ENST00000574095	IRS4	O14654	1257 aa	Predicted RBP	33.52	■■■□□ 2.96
NPLOC4-215	ENST00000574095	SP8	Q8IXZ3	490 aa		33.52	■■■□□ 2.96
NPLOC4-215	ENST00000574095	FANCI	Q9NVI1	1328 aa		33.52	■■■□□ 2.96
NPLOC4-215	ENST00000574095	COL4A5	P29400	1685 aa		33.52	■■■□□ 2.96
NPLOC4-215	ENST00000574095	SF3B3	Q15393	1217 aa	Known RBP	33.51	■■■□□ 2.95
NPLOC4-215	ENST00000574095	LARGE2	Q8N3Y3	721 aa		33.51	■■■□□ 2.95
NPLOC4-215	ENST00000574095	METTL22	Q9BUU2	404 aa	Predicted RBP	33.51	■■■□□ 2.95
NPLOC4-215	ENST00000574095	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	33.5	■■■□□ 2.95
NPLOC4-215	ENST00000574095	L3MBTL3	Q96JM7	780 aa	Predicted RBP	33.5	■■■□□ 2.95
NPLOC4-215	ENST00000574095	MAP3K2	Q9Y2U5	619 aa		33.5	■■■□□ 2.95
NPLOC4-215	ENST00000574095	G2E3	Q7L622	706 aa		33.49	■■■□□ 2.95
NPLOC4-215	ENST00000574095	CCDC191	Q8NCU4	936 aa		33.49	■■■□□ 2.95
NPLOC4-215	ENST00000574095	HTRA3	P83110	453 aa		33.48	■■■□□ 2.95
NPLOC4-215	ENST00000574095	KSR2	Q6VAB6	950 aa		33.48	■■■□□ 2.95

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms