RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ZBTB38Q8NAP3 1195 aaPredicted RBP17.04■□□□□ 0.32
CCDC40-209ENST00000573474 ARHGEF1Q92888 912 aaKnown RBP17.04■□□□□ 0.32
CCDC40-209ENST00000573474 BICC1Q9H694 974 aaKnown RBP17.04■□□□□ 0.32
CCDC40-209ENST00000573474 RFC4P35249 363 aa17.03■□□□□ 0.32
CCDC40-209ENST00000573474 NUCB1Q02818 461 aa17.03■□□□□ 0.32
CCDC40-209ENST00000573474 TNS1Q9HBL0 1735 aaKnown RBP17.03■□□□□ 0.32
CCDC40-209ENST00000573474 NUP98P52948 1817 aa17.03■□□□□ 0.32
CCDC40-209ENST00000573474 SSFA2P28290 1259 aa17.02■□□□□ 0.32
CCDC40-209ENST00000573474 RABL6Q3YEC7 729 aaPredicted RBP17.02■□□□□ 0.32
CCDC40-209ENST00000573474 USPL1Q5W0Q7 1092 aa17.02■□□□□ 0.32
CCDC40-209ENST00000573474 SMIM5Q71RC9 77 aa17.02■□□□□ 0.32
CCDC40-209ENST00000573474 AMIGO3Q86WK7 504 aa17.02■□□□□ 0.32
CCDC40-209ENST00000573474 TRMT112Q9UI30 125 aaKnown RBP17.02■□□□□ 0.32
CCDC40-209ENST00000573474 NIP7Q9Y221 180 aaKnown RBP eCLIP17.02■□□□□ 0.32
CCDC40-209ENST00000573474 EP400Q96L91 3159 aa17.02■□□□□ 0.31
CCDC40-209ENST00000573474 UBN2Q6ZU65 1347 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 CDHR2Q9BYE9 1310 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.01■□□□□ 0.31
CCDC40-209ENST00000573474 PHF14O94880 888 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 SF3B2Q13435 895 aaKnown RBP17.01■□□□□ 0.31
CCDC40-209ENST00000573474 EPHA10Q5JZY3 1008 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 ANKRD45Q5TZF3 282 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 FAM89AQ96GI7 184 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 BCL2L12Q9HB09 334 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 SRP68Q9UHB9 627 aaKnown RBP17.01■□□□□ 0.31
CCDC40-209ENST00000573474 ANKRD36CQ5JPF3 1778 aa17.01■□□□□ 0.31
CCDC40-209ENST00000573474 BCORQ6W2J9 1755 aa17■□□□□ 0.31
CCDC40-209ENST00000573474 FOXO4P98177 505 aa17■□□□□ 0.31
CCDC40-209ENST00000573474 RTL5Q5HYW3 569 aaPredicted RBP17■□□□□ 0.31
CCDC40-209ENST00000573474 SUSD4Q5VX71 490 aa17■□□□□ 0.31
CCDC40-209ENST00000573474 CHD1LQ86WJ1 897 aa17■□□□□ 0.31
CCDC40-209ENST00000573474 CAMKK2Q96RR4 588 aa17■□□□□ 0.31
CCDC40-209ENST00000573474 UTP14AQ9BVJ6 771 aaKnown RBP17■□□□□ 0.31
CCDC40-209ENST00000573474 PLA2G12BQ9BX93 195 aa17■□□□□ 0.31
CCDC40-209ENST00000573474 ZBTB47Q9UFB7 747 aaPredicted RBP17■□□□□ 0.31
CCDC40-209ENST00000573474 RGPD3A6NKT7 1758 aaPredicted RBP17■□□□□ 0.31
CCDC40-209ENST00000573474 RGPD4Q7Z3J3 1758 aa17■□□□□ 0.31
CCDC40-209ENST00000573474 USP42Q9H9J4 1324 aaKnown RBP16.99■□□□□ 0.31
CCDC40-209ENST00000573474 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
CCDC40-209ENST00000573474 RAB11FIP3O75154 756 aa16.98■□□□□ 0.31
CCDC40-209ENST00000573474 SURF6O75683 361 aaKnown RBP16.98■□□□□ 0.31
CCDC40-209ENST00000573474 HSP90B1P14625 803 aaKnown RBP16.98■□□□□ 0.31
CCDC40-209ENST00000573474 BAG6P46379 1132 aa16.98■□□□□ 0.31
CCDC40-209ENST00000573474 EN1Q05925 392 aaPredicted RBP16.98■□□□□ 0.31
CCDC40-209ENST00000573474 HSP90AB4PQ58FF6 505 aa16.98■□□□□ 0.31
CCDC40-209ENST00000573474 LMBR1LQ6UX01 489 aa16.98■□□□□ 0.31
CCDC40-209ENST00000573474 SKAP1Q86WV1 359 aa16.98■□□□□ 0.31
CCDC40-209ENST00000573474 TFCP2L1Q9NZI6 479 aa16.98■□□□□ 0.31
CCDC40-209ENST00000573474 NOP58Q9Y2X3 529 aaKnown RBP16.98■□□□□ 0.31
CCDC40-209ENST00000573474 SCN7AQ01118 1682 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 IRS4O14654 1257 aaPredicted RBP16.97■□□□□ 0.31
CCDC40-209ENST00000573474 RGS3P49796 1198 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 EZH2Q15910 746 aaKnown RBP16.97■□□□□ 0.31
CCDC40-209ENST00000573474 TBC1D9BQ66K14 1250 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 FLAD1Q8NFF5 587 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 SETDB2Q96T68 719 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 LNPKQ9C0E8 428 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 EXOC6BQ9Y2D4 811 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 UBR3Q6ZT12 1888 aa16.97■□□□□ 0.31
CCDC40-209ENST00000573474 SH3TC1Q8TE82 1336 aa16.96■□□□□ 0.31
CCDC40-209ENST00000573474 NTSR2O95665 410 aa16.96■□□□□ 0.31
CCDC40-209ENST00000573474 ZNF827Q17R98 1081 aa16.96■□□□□ 0.31
CCDC40-209ENST00000573474 CCDC125Q86Z20 511 aa16.96■□□□□ 0.31
CCDC40-209ENST00000573474 SYNE4Q8N205 404 aa16.96■□□□□ 0.31
CCDC40-209ENST00000573474 FAM177BA6PVY3 158 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 APBB1O00213 710 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 PDE8AO60658 829 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 CSF1RP07333 972 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 RFX5P48382 616 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-209ENST00000573474 BICDL1Q6ZP65 573 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 LRRCC1Q9C099 1032 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 NYXQ9GZU5 481 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 CHMP3Q9Y3E7 222 aa16.95■□□□□ 0.3
CCDC40-209ENST00000573474 PDE4AP27815 886 aa16.94■□□□□ 0.3
CCDC40-209ENST00000573474 G3BP1Q13283 466 aaKnown RBP eCLIP16.94■□□□□ 0.3
CCDC40-209ENST00000573474 ERC1Q8IUD2 1116 aa16.94■□□□□ 0.3
CCDC40-209ENST00000573474 COPRSQ9NQ92 184 aa16.94■□□□□ 0.3
CCDC40-209ENST00000573474 PA2G4Q9UQ80 394 aaKnown RBP16.94■□□□□ 0.3
CCDC40-209ENST00000573474 C4AP0C0L4 1744 aa16.93■□□□□ 0.3
CCDC40-209ENST00000573474 GYS1P13807 737 aa16.93■□□□□ 0.3
CCDC40-209ENST00000573474 CTSWP56202 376 aa16.93■□□□□ 0.3
CCDC40-209ENST00000573474 OS9Q13438 667 aaPredicted RBP16.93■□□□□ 0.3
CCDC40-209ENST00000573474 KIF1BPQ96EK5 621 aa16.93■□□□□ 0.3
CCDC40-209ENST00000573474 SMARCA5O60264 1052 aaPredicted RBP16.92■□□□□ 0.3
CCDC40-209ENST00000573474 HCLS1P14317 486 aaPredicted RBP16.92■□□□□ 0.3
CCDC40-209ENST00000573474 PTPN12Q05209 780 aaKnown RBP16.92■□□□□ 0.3
CCDC40-209ENST00000573474 TPTE2Q6XPS3 522 aa16.92■□□□□ 0.3
CCDC40-209ENST00000573474 TTLL11Q8NHH1 800 aa16.92■□□□□ 0.3
CCDC40-209ENST00000573474 RHPN1Q8TCX5 695 aa16.92■□□□□ 0.3
CCDC40-209ENST00000573474 STK32BQ9NY57 414 aa16.92■□□□□ 0.3
CCDC40-209ENST00000573474 GTF2E1P29083 439 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-209ENST00000573474 NFIXQ14938 502 aa16.91■□□□□ 0.3
CCDC40-209ENST00000573474 CCDC57Q2TAC2 916 aa16.91■□□□□ 0.3
CCDC40-209ENST00000573474 SLC10A5Q5PT55 438 aa16.91■□□□□ 0.3
CCDC40-209ENST00000573474 NBPF5PQ86XG9 351 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-209ENST00000573474 COL23A1Q86Y22 540 aaPredicted RBP16.91■□□□□ 0.3
CCDC40-209ENST00000573474 NUTM1Q86Y26 1132 aa16.91■□□□□ 0.3
CCDC40-209ENST00000573474 CARMIL3Q8ND23 1372 aa16.9■□□□□ 0.3
CCDC40-209ENST00000573474 MSH5O43196 834 aa16.9■□□□□ 0.3
CCDC40-209ENST00000573474 TM4SF1P30408 202 aa16.9■□□□□ 0.3
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