RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 ATP10DQ9P241 1426 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 ATP8B2P98198 1209 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 TTC22Q5TAA0 569 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 NEXNQ0ZGT2 675 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 ZNF830Q96NB3 372 aaPredicted RBP14.59□□□□□ -0.07
CIITA-209ENST00000573309 TBC1D2BQ9UPU7 963 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 PCDH11XQ9BZA7 1347 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 PCDH11YQ9BZA8 1340 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 A0A087WZG4 1122 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 KCNQ2O43526 872 aa14.59□□□□□ -0.07
CIITA-209ENST00000573309 CWC22Q9HCG8 908 aaKnown RBP14.59□□□□□ -0.07
CIITA-209ENST00000573309 TPRNQ4KMQ1 711 aa14.58□□□□□ -0.08
CIITA-209ENST00000573309 PTF1AQ7RTS3 328 aa14.58□□□□□ -0.08
CIITA-209ENST00000573309 DCCP43146 1447 aa14.58□□□□□ -0.08
CIITA-209ENST00000573309 DDX58O95786 925 aaKnown RBP14.58□□□□□ -0.08
CIITA-209ENST00000573309 CASC1Q6TDU7 716 aa14.58□□□□□ -0.08
CIITA-209ENST00000573309 MYRIPQ8NFW9 859 aa14.58□□□□□ -0.08
CIITA-209ENST00000573309 TRPM3Q9HCF6 1732 aaPredicted RBP14.58□□□□□ -0.08
CIITA-209ENST00000573309 HYPKQ9NX55 129 aa14.58□□□□□ -0.08
CIITA-209ENST00000573309 PTMAP06454 111 aaKnown RBP14.57□□□□□ -0.08
CIITA-209ENST00000573309 C17orf53Q8N3J3 647 aaPredicted RBP14.57□□□□□ -0.08
CIITA-209ENST00000573309 CBX1P83916 185 aa14.57□□□□□ -0.08
CIITA-209ENST00000573309 KIAA2012Q0VF49 1180 aa14.57□□□□□ -0.08
CIITA-209ENST00000573309 GRM8O00222 908 aa14.56□□□□□ -0.08
CIITA-209ENST00000573309 COL5A2P05997 1499 aaPredicted RBP14.56□□□□□ -0.08
CIITA-209ENST00000573309 PDE1AP54750 535 aa14.56□□□□□ -0.08
CIITA-209ENST00000573309 FOXD4L6Q3SYB3 417 aaPredicted RBP14.56□□□□□ -0.08
CIITA-209ENST00000573309 DNTTIP2Q5QJE6 756 aaKnown RBP14.56□□□□□ -0.08
CIITA-209ENST00000573309 FOXD4L3Q6VB84 417 aaPredicted RBP14.56□□□□□ -0.08
CIITA-209ENST00000573309 ZNF594Q96JF6 807 aaPredicted RBP14.56□□□□□ -0.08
CIITA-209ENST00000573309 TOM1O60784 492 aa14.56□□□□□ -0.08
CIITA-209ENST00000573309 UTP14CQ5TAP6 766 aaKnown RBP14.56□□□□□ -0.08
CIITA-209ENST00000573309 LARP6Q9BRS8 491 aaKnown RBP14.55□□□□□ -0.08
CIITA-209ENST00000573309 ATP2B3Q16720 1220 aa14.55□□□□□ -0.08
CIITA-209ENST00000573309 RHPN1Q8TCX5 695 aa14.55□□□□□ -0.08
CIITA-209ENST00000573309 EDC3Q96F86 508 aaKnown RBP14.55□□□□□ -0.08
CIITA-209ENST00000573309 XIRP1Q702N8 1843 aaKnown RBP14.55□□□□□ -0.08
CIITA-209ENST00000573309 MX1P20591 662 aa14.54□□□□□ -0.08
CIITA-209ENST00000573309 DDB1Q16531 1140 aa14.54□□□□□ -0.08
CIITA-209ENST00000573309 FAM89AQ96GI7 184 aa14.54□□□□□ -0.08
CIITA-209ENST00000573309 ST18O60284 1047 aa14.54□□□□□ -0.08
CIITA-209ENST00000573309 KAZALD1Q96I82 304 aa14.54□□□□□ -0.08
CIITA-209ENST00000573309 TLR7Q9NYK1 1049 aaKnown RBP14.54□□□□□ -0.08
CIITA-209ENST00000573309 CCDC24Q8N4L8 307 aa14.54□□□□□ -0.08
CIITA-209ENST00000573309 TSPY26PQ9H489 355 aa14.54□□□□□ -0.08
CIITA-209ENST00000573309 UTRNP46939 3433 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 NEURL1BA8MQ27 555 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 CHGBP05060 677 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 AACSQ86V21 672 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 LINS1Q8NG48 757 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 CPDO75976 1380 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 ANO2Q9NQ90 1003 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 ATG3Q9NT62 314 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 BABAM1Q9NWV8 329 aa14.53□□□□□ -0.08
CIITA-209ENST00000573309 ALS2Q96Q42 1657 aa14.52□□□□□ -0.08
CIITA-209ENST00000573309 GCKRQ14397 625 aa14.52□□□□□ -0.08
CIITA-209ENST00000573309 MEX3CQ5U5Q3 659 aaKnown RBP14.52□□□□□ -0.08
CIITA-209ENST00000573309 LMBR1LQ6UX01 489 aa14.52□□□□□ -0.08
CIITA-209ENST00000573309 TTC12Q9H892 705 aaPredicted RBP14.52□□□□□ -0.08
CIITA-209ENST00000573309 BICDL1Q6ZP65 573 aa14.52□□□□□ -0.09
CIITA-209ENST00000573309 BOLA2Q9H3K6 86 aa14.52□□□□□ -0.09
CIITA-209ENST00000573309 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.52□□□□□ -0.09
CIITA-209ENST00000573309 KIF1AQ12756 1690 aa14.52□□□□□ -0.09
CIITA-209ENST00000573309 GADD45BO75293 160 aaPredicted RBP14.51□□□□□ -0.09
CIITA-209ENST00000573309 NEK4P51957 841 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 NOLC1Q14978 699 aaKnown RBP eCLIP14.51□□□□□ -0.09
CIITA-209ENST00000573309 NEUROD6Q96NK8 337 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 SLC4A9Q96Q91 983 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 GDPD2Q9HCC8 539 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 ZBTB1Q9Y2K1 713 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 G3BP1Q13283 466 aaKnown RBP eCLIP14.51□□□□□ -0.09
CIITA-209ENST00000573309 HLFQ16534 295 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 PPP4R3BQ5MIZ7 849 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 IL25Q9H293 177 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 MBD3O95983 291 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 PIBF1Q8WXW3 757 aa14.51□□□□□ -0.09
CIITA-209ENST00000573309 TMX3Q96JJ7 454 aa14.5□□□□□ -0.09
CIITA-209ENST00000573309 METTL22Q9BUU2 404 aaPredicted RBP14.5□□□□□ -0.09
CIITA-209ENST00000573309 REC8O95072 547 aa14.5□□□□□ -0.09
CIITA-209ENST00000573309 HOXB7P09629 217 aa14.5□□□□□ -0.09
CIITA-209ENST00000573309 IFIT2P09913 472 aaKnown RBP14.5□□□□□ -0.09
CIITA-209ENST00000573309 SLFNL1Q499Z3 407 aa14.5□□□□□ -0.09
CIITA-209ENST00000573309 CWC27Q6UX04 472 aaKnown RBP14.5□□□□□ -0.09
CIITA-209ENST00000573309 BRD1O95696 1058 aa14.5□□□□□ -0.09
CIITA-209ENST00000573309 USP25Q9UHP3 1055 aa14.5□□□□□ -0.09
CIITA-209ENST00000573309 GTF2F1P35269 517 aaKnown RBP eCLIP14.49□□□□□ -0.09
CIITA-209ENST00000573309 MARCH10Q8NA82 808 aaPredicted RBP14.49□□□□□ -0.09
CIITA-209ENST00000573309 SSH3Q8TE77 659 aa14.49□□□□□ -0.09
CIITA-209ENST00000573309 OVOS2A0A0G2JMS6 1433 aa14.49□□□□□ -0.09
CIITA-209ENST00000573309 SPDYE4A6NLX3 237 aa14.49□□□□□ -0.09
CIITA-209ENST00000573309 ERC2O15083 957 aa14.49□□□□□ -0.09
CIITA-209ENST00000573309 PRIMPOLQ96LW4 560 aa14.49□□□□□ -0.09
CIITA-209ENST00000573309 ATP6V1AP38606 617 aa14.48□□□□□ -0.09
CIITA-209ENST00000573309 HMGN5P82970 282 aaKnown RBP14.48□□□□□ -0.09
CIITA-209ENST00000573309 HEG1Q9ULI3 1381 aa14.48□□□□□ -0.09
CIITA-209ENST00000573309 CLASRPQ8N2M8 674 aaKnown RBP14.48□□□□□ -0.09
CIITA-209ENST00000573309 DNAJC2Q99543 621 aaKnown RBP14.48□□□□□ -0.09
CIITA-209ENST00000573309 UPF3BQ9BZI7 483 aaKnown RBP14.48□□□□□ -0.09
CIITA-209ENST00000573309 BCL2L12Q9HB09 334 aa14.48□□□□□ -0.09
CIITA-209ENST00000573309 ERVV-2B6SEH9 535 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms