RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 CKAP2LQ8IYA6 745 aa20.38■□□□□ 0.85
VPS53-215ENST00000573028 PIBF1Q8WXW3 757 aa20.38■□□□□ 0.85
VPS53-215ENST00000573028 EDC3Q96F86 508 aaKnown RBP20.38■□□□□ 0.85
VPS53-215ENST00000573028 BICC1Q9H694 974 aaKnown RBP20.38■□□□□ 0.85
VPS53-215ENST00000573028 GOLGA6L4A6NEF3 574 aa20.38■□□□□ 0.85
VPS53-215ENST00000573028 AP5Z1O43299 807 aa20.38■□□□□ 0.85
VPS53-215ENST00000573028 KSR2Q6VAB6 950 aa20.38■□□□□ 0.85
VPS53-215ENST00000573028 NECTIN1Q15223 517 aa20.37■□□□□ 0.85
VPS53-215ENST00000573028 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.37■□□□□ 0.85
VPS53-215ENST00000573028 A0A0D9SFI3 127 aa20.37■□□□□ 0.85
VPS53-215ENST00000573028 TTC6Q86TZ1 520 aa20.37■□□□□ 0.85
VPS53-215ENST00000573028 ERC1Q8IUD2 1116 aa20.37■□□□□ 0.85
VPS53-215ENST00000573028 SASH1O94885 1247 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 MYL6BP14649 208 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 AKAP4Q5JQC9 854 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 LRRC37A3O60309 1634 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 BLOC1S2Q6QNY1 142 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 NDUFB9Q9Y6M9 179 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 SLC27A2O14975 620 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 HOXB7P09629 217 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 KRT85P78386 507 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 CHMP4AQ9BY43 222 aa20.36■□□□□ 0.85
VPS53-215ENST00000573028 GRM8O00222 908 aa20.35■□□□□ 0.85
VPS53-215ENST00000573028 GIGYF1O75420 1035 aaPredicted RBP20.35■□□□□ 0.85
VPS53-215ENST00000573028 LIG1P18858 919 aa20.35■□□□□ 0.85
VPS53-215ENST00000573028 CACNA1FO60840 1977 aa20.35■□□□□ 0.85
VPS53-215ENST00000573028 RNMTO43148 476 aaKnown RBP20.35■□□□□ 0.85
VPS53-215ENST00000573028 CCDC192P0DO97 292 aa20.35■□□□□ 0.85
VPS53-215ENST00000573028 RIC3Q7Z5B4 369 aa20.35■□□□□ 0.85
VPS53-215ENST00000573028 MAP7D2Q96T17 732 aa20.35■□□□□ 0.85
VPS53-215ENST00000573028 USP42Q9H9J4 1324 aaKnown RBP20.34■□□□□ 0.85
VPS53-215ENST00000573028 ALDH1L1O75891 902 aa20.34■□□□□ 0.85
VPS53-215ENST00000573028 SLC39A6Q13433 755 aa20.34■□□□□ 0.85
VPS53-215ENST00000573028 MTX1Q13505 466 aa20.34■□□□□ 0.85
VPS53-215ENST00000573028 TM6SF1Q9BZW5 370 aa20.34■□□□□ 0.85
VPS53-215ENST00000573028 PIP4K2AP48426 406 aaPredicted RBP20.33■□□□□ 0.85
VPS53-215ENST00000573028 FOSBP53539 338 aa20.33■□□□□ 0.85
VPS53-215ENST00000573028 NUP62CLQ9H1M0 184 aa20.33■□□□□ 0.85
VPS53-215ENST00000573028 PSMA5P28066 241 aa20.33■□□□□ 0.84
VPS53-215ENST00000573028 LUZP1Q86V48 1076 aa20.33■□□□□ 0.84
VPS53-215ENST00000573028 FUCA2Q9BTY2 467 aa20.33■□□□□ 0.84
VPS53-215ENST00000573028 DRC7Q8IY82 874 aa20.32■□□□□ 0.84
VPS53-215ENST00000573028 MAP4K1Q92918 833 aa20.32■□□□□ 0.84
VPS53-215ENST00000573028 PYCARDQ9ULZ3 195 aa20.32■□□□□ 0.84
VPS53-215ENST00000573028 LARP1Q6PKG0 1096 aaKnown RBP20.32■□□□□ 0.84
VPS53-215ENST00000573028 ZNF589Q86UQ0 364 aaPredicted RBP20.32■□□□□ 0.84
VPS53-215ENST00000573028 MYRIPQ8NFW9 859 aa20.32■□□□□ 0.84
VPS53-215ENST00000573028 KAZALD1Q96I82 304 aa20.32■□□□□ 0.84
VPS53-215ENST00000573028 DACT1Q9NYF0 836 aa20.32■□□□□ 0.84
VPS53-215ENST00000573028 MAP3K11Q16584 847 aa20.32■□□□□ 0.84
VPS53-215ENST00000573028 RNF20Q5VTR2 975 aa20.31■□□□□ 0.84
VPS53-215ENST00000573028 LINS1Q8NG48 757 aa20.31■□□□□ 0.84
VPS53-215ENST00000573028 CHGBP05060 677 aa20.31■□□□□ 0.84
VPS53-215ENST00000573028 SPATA32Q96LK8 384 aa20.31■□□□□ 0.84
VPS53-215ENST00000573028 CEBPZQ03701 1054 aaKnown RBP20.31■□□□□ 0.84
VPS53-215ENST00000573028 DDX11Q96FC9 970 aa20.31■□□□□ 0.84
VPS53-215ENST00000573028 TNMDQ9H2S6 317 aa20.31■□□□□ 0.84
VPS53-215ENST00000573028 DDX58O95786 925 aaKnown RBP20.3■□□□□ 0.84
VPS53-215ENST00000573028 HSP90B1P14625 803 aaKnown RBP20.3■□□□□ 0.84
VPS53-215ENST00000573028 PRDM10Q9NQV6 1147 aa20.3■□□□□ 0.84
VPS53-215ENST00000573028 HDAC5Q9UQL6 1122 aa20.3■□□□□ 0.84
VPS53-215ENST00000573028 BICD2Q8TD16 824 aa20.3■□□□□ 0.84
VPS53-215ENST00000573028 PPFIA3O75145 1194 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 LRRC2Q9BYS8 371 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 JAK2O60674 1132 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 FGD1P98174 961 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 TYRO3Q06418 890 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 DNAJC2Q99543 621 aaKnown RBP20.29■□□□□ 0.84
VPS53-215ENST00000573028 KCNF1Q9H3M0 494 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 HIP1O00291 1037 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 PDCP20941 246 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 ANKRD24Q8TF21 1146 aa20.29■□□□□ 0.84
VPS53-215ENST00000573028 PTGS1P23219 599 aa20.28■□□□□ 0.84
VPS53-215ENST00000573028 CCDC129Q6ZRS4 1044 aa20.28■□□□□ 0.84
VPS53-215ENST00000573028 RPS6KB1P23443 525 aa20.28■□□□□ 0.84
VPS53-215ENST00000573028 ANO6Q4KMQ2 910 aa20.28■□□□□ 0.84
VPS53-215ENST00000573028 AMOTQ4VCS5 1084 aa20.28■□□□□ 0.84
VPS53-215ENST00000573028 MYD88Q99836 296 aa20.28■□□□□ 0.84
VPS53-215ENST00000573028 HMGN5P82970 282 aaKnown RBP20.27■□□□□ 0.84
VPS53-215ENST00000573028 KCNH5Q8NCM2 988 aa20.27■□□□□ 0.84
VPS53-215ENST00000573028 ANKARQ7Z5J8 1434 aa20.27■□□□□ 0.84
VPS53-215ENST00000573028 GCP02774 474 aa20.27■□□□□ 0.84
VPS53-215ENST00000573028 NEXNQ0ZGT2 675 aa20.27■□□□□ 0.84
VPS53-215ENST00000573028 EPHA10Q5JZY3 1008 aa20.27■□□□□ 0.84
VPS53-215ENST00000573028 FAM200AQ8TCP9 573 aa20.27■□□□□ 0.84
VPS53-215ENST00000573028 NAP1L2Q9ULW6 460 aaPredicted RBP20.27■□□□□ 0.84
VPS53-215ENST00000573028 GOLGA6L6A8MZA4 724 aa20.27■□□□□ 0.83
VPS53-215ENST00000573028 IGKV5-2P06315 115 aa20.27■□□□□ 0.83
VPS53-215ENST00000573028 PRIMPOLQ96LW4 560 aa20.27■□□□□ 0.83
VPS53-215ENST00000573028 BCL11BQ9C0K0 894 aaPredicted RBP20.27■□□□□ 0.83
VPS53-215ENST00000573028 MRVI1Q9Y6F6 885 aa20.27■□□□□ 0.83
VPS53-215ENST00000573028 PXDNQ92626 1479 aa20.26■□□□□ 0.83
VPS53-215ENST00000573028 TOB2Q14106 344 aaPredicted RBP20.26■□□□□ 0.83
VPS53-215ENST00000573028 KCNB2Q92953 911 aa20.26■□□□□ 0.83
VPS53-215ENST00000573028 SEC62Q99442 399 aaKnown RBP20.26■□□□□ 0.83
VPS53-215ENST00000573028 TRIM5Q9C035 493 aa20.26■□□□□ 0.83
VPS53-215ENST00000573028 KIF3AQ9Y496 699 aa20.26■□□□□ 0.83
VPS53-215ENST00000573028 H3BQV1 296 aa20.25■□□□□ 0.83
VPS53-215ENST00000573028 ANKRD1Q15327 319 aa20.25■□□□□ 0.83
VPS53-215ENST00000573028 IFFO2Q5TF58 517 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms