RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 A0A0G2JLW4 131 aa20.27■□□□□ 0.84
CHD3-215ENST00000572750 DPEP1P16444 411 aa20.27■□□□□ 0.84
CHD3-215ENST00000572750 CHRNA5P30532 468 aa20.27■□□□□ 0.84
CHD3-215ENST00000572750 ST5P78524 1137 aa20.27■□□□□ 0.84
CHD3-215ENST00000572750 ZNF428Q96B54 188 aa20.27■□□□□ 0.84
CHD3-215ENST00000572750 HSPA1AP0DMV8 641 aaKnown RBP20.26■□□□□ 0.83
CHD3-215ENST00000572750 HSPA1BP0DMV9 641 aaKnown RBP20.26■□□□□ 0.83
CHD3-215ENST00000572750 TGFB2P61812 414 aa20.26■□□□□ 0.83
CHD3-215ENST00000572750 HSP90AB3PQ58FF7 597 aa20.26■□□□□ 0.83
CHD3-215ENST00000572750 RIC3Q7Z5B4 369 aa20.26■□□□□ 0.83
CHD3-215ENST00000572750 NUTM1Q86Y26 1132 aa20.26■□□□□ 0.83
CHD3-215ENST00000572750 NTSR2O95665 410 aa20.25■□□□□ 0.83
CHD3-215ENST00000572750 FLIIQ13045 1269 aa20.25■□□□□ 0.83
CHD3-215ENST00000572750 TCIRG1Q13488 830 aa20.25■□□□□ 0.83
CHD3-215ENST00000572750 SUSD4Q5VX71 490 aa20.25■□□□□ 0.83
CHD3-215ENST00000572750 LAMB2P55268 1798 aa20.25■□□□□ 0.83
CHD3-215ENST00000572750 DDX60Q8IY21 1712 aaKnown RBP20.24■□□□□ 0.83
CHD3-215ENST00000572750 ATP5J2-PTCD1G3V325 749 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 DDX58O95786 925 aaKnown RBP20.24■□□□□ 0.83
CHD3-215ENST00000572750 PARP10Q53GL7 1025 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 TPTE2Q6XPS3 522 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 ARHGAP27Q6ZUM4 889 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 NLRP10Q86W26 655 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 NYXQ9GZU5 481 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 BCS1LQ9Y276 419 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 ARFGEF1Q9Y6D6 1849 aa20.24■□□□□ 0.83
CHD3-215ENST00000572750 ERFEQ4G0M1 354 aa20.23■□□□□ 0.83
CHD3-215ENST00000572750 BRIP1Q9BX63 1249 aa20.23■□□□□ 0.83
CHD3-215ENST00000572750 MAP3K2Q9Y2U5 619 aa20.23■□□□□ 0.83
CHD3-215ENST00000572750 PI4KAP2A4QPH2 592 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 KCNA3P22001 575 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 GTF2E1P29083 439 aaPredicted RBP20.22■□□□□ 0.83
CHD3-215ENST00000572750 FKBP5Q13451 457 aaPredicted RBP20.22■□□□□ 0.83
CHD3-215ENST00000572750 C9orf131Q5VYM1 1079 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 C2CD5Q86YS7 1000 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 PI4KAP1Q8N8J0 262 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 MYD88Q99836 296 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 ISCA1Q9BUE6 129 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 BCL2L13Q9BXK5 485 aa20.22■□□□□ 0.83
CHD3-215ENST00000572750 RIC1Q4ADV7 1423 aa20.21■□□□□ 0.83
CHD3-215ENST00000572750 PDE6BP35913 854 aa20.21■□□□□ 0.83
CHD3-215ENST00000572750 PPP1R42Q7Z4L9 355 aa20.21■□□□□ 0.83
CHD3-215ENST00000572750 C16orf71Q8IYS4 520 aaPredicted RBP20.21■□□□□ 0.83
CHD3-215ENST00000572750 UTP14AQ9BVJ6 771 aaKnown RBP20.21■□□□□ 0.83
CHD3-215ENST00000572750 KSR2Q6VAB6 950 aa20.2■□□□□ 0.82
CHD3-215ENST00000572750 SSH1Q8WYL5 1049 aa20.2■□□□□ 0.82
CHD3-215ENST00000572750 METTL22Q9BUU2 404 aaPredicted RBP20.2■□□□□ 0.82
CHD3-215ENST00000572750 RRAGCQ9HB90 399 aa20.2■□□□□ 0.82
CHD3-215ENST00000572750 H0YIN7 160 aa20.19■□□□□ 0.82
CHD3-215ENST00000572750 SYNE4Q8N205 404 aa20.18■□□□□ 0.82
CHD3-215ENST00000572750 MRPL50Q8N5N7 158 aaKnown RBP20.18■□□□□ 0.82
CHD3-215ENST00000572750 PIM2Q9P1W9 311 aa20.18■□□□□ 0.82
CHD3-215ENST00000572750 TRMT112Q9UI30 125 aaKnown RBP20.18■□□□□ 0.82
CHD3-215ENST00000572750 RNF123Q5XPI4 1314 aa20.18■□□□□ 0.82
CHD3-215ENST00000572750 SMC4Q9NTJ3 1288 aa20.17■□□□□ 0.82
CHD3-215ENST00000572750 SLX4Q8IY92 1834 aa20.16■□□□□ 0.82
CHD3-215ENST00000572750 F6X3S4 739 aa20.16■□□□□ 0.82
CHD3-215ENST00000572750 IGKV5-2P06315 115 aa20.16■□□□□ 0.82
CHD3-215ENST00000572750 CT47B1P0C2W7 299 aaPredicted RBP20.16■□□□□ 0.82
CHD3-215ENST00000572750 DALRD3Q5D0E6 543 aaKnown RBP20.16■□□□□ 0.82
CHD3-215ENST00000572750 RTL5Q5HYW3 569 aaPredicted RBP20.16■□□□□ 0.82
CHD3-215ENST00000572750 C3orf67Q6ZVT6 689 aa20.16■□□□□ 0.82
CHD3-215ENST00000572750 DNAAF4Q8WXU2 420 aa20.16■□□□□ 0.82
CHD3-215ENST00000572750 ZNF622Q969S3 477 aaKnown RBP eCLIP20.16■□□□□ 0.82
CHD3-215ENST00000572750 SH3TC1Q8TE82 1336 aa20.16■□□□□ 0.82
CHD3-215ENST00000572750 SRGNP10124 158 aa20.15■□□□□ 0.82
CHD3-215ENST00000572750 NEXNQ0ZGT2 675 aa20.15■□□□□ 0.82
CHD3-215ENST00000572750 TRIM28Q13263 835 aaKnown RBP20.15■□□□□ 0.82
CHD3-215ENST00000572750 CWF19L2Q2TBE0 894 aaKnown RBP20.15■□□□□ 0.82
CHD3-215ENST00000572750 ALDH1L2Q3SY69 923 aa20.15■□□□□ 0.82
CHD3-215ENST00000572750 CWC25Q9NXE8 425 aaPredicted RBP20.15■□□□□ 0.82
CHD3-215ENST00000572750 KLRG2A4D1S0 409 aaPredicted RBP20.14■□□□□ 0.81
CHD3-215ENST00000572750 HCLS1P14317 486 aaPredicted RBP20.14■□□□□ 0.81
CHD3-215ENST00000572750 CCDC191Q8NCU4 936 aa20.14■□□□□ 0.81
CHD3-215ENST00000572750 FAM89AQ96GI7 184 aa20.14■□□□□ 0.81
CHD3-215ENST00000572750 PDZRN3Q9UPQ7 1066 aa20.14■□□□□ 0.81
CHD3-215ENST00000572750 NEURL1BA8MQ27 555 aa20.13■□□□□ 0.81
CHD3-215ENST00000572750 CRY2Q49AN0 593 aa20.13■□□□□ 0.81
CHD3-215ENST00000572750 MYH3P11055 1940 aa20.12■□□□□ 0.81
CHD3-215ENST00000572750 NPR1P16066 1061 aa20.12■□□□□ 0.81
CHD3-215ENST00000572750 STYK1Q6J9G0 422 aa20.12■□□□□ 0.81
CHD3-215ENST00000572750 TTLL6Q8N841 843 aa20.12■□□□□ 0.81
CHD3-215ENST00000572750 SMC1BQ8NDV3 1235 aa20.12■□□□□ 0.81
CHD3-215ENST00000572750 JARID2Q92833 1246 aaPredicted RBP20.12■□□□□ 0.81
CHD3-215ENST00000572750 MASTLQ96GX5 879 aa20.12■□□□□ 0.81
CHD3-215ENST00000572750 TAF1P21675 1872 aa20.11■□□□□ 0.81
CHD3-215ENST00000572750 KDM2BQ8NHM5 1336 aa20.11■□□□□ 0.81
CHD3-215ENST00000572750 RARSP54136 660 aaKnown RBP20.11■□□□□ 0.81
CHD3-215ENST00000572750 PRPF40BQ6NWY9 871 aaKnown RBP20.11■□□□□ 0.81
CHD3-215ENST00000572750 SBF1O95248 1867 aa20.11■□□□□ 0.81
CHD3-215ENST00000572750 PTPRCP08575 1304 aa20.1■□□□□ 0.81
CHD3-215ENST00000572750 SLC10A5Q5PT55 438 aa20.1■□□□□ 0.81
CHD3-215ENST00000572750 SLC4A10Q6U841 1118 aa20.1■□□□□ 0.81
CHD3-215ENST00000572750 ZBTB38Q8NAP3 1195 aaPredicted RBP20.1■□□□□ 0.81
CHD3-215ENST00000572750 LINS1Q8NG48 757 aa20.1■□□□□ 0.81
CHD3-215ENST00000572750 RPGRQ92834 1020 aaKnown RBP20.1■□□□□ 0.81
CHD3-215ENST00000572750 YTHDC1Q96MU7 727 aaKnown RBP20.1■□□□□ 0.81
CHD3-215ENST00000572750 NLRP3Q96P20 1036 aa20.1■□□□□ 0.81
CHD3-215ENST00000572750 COL4A1P02462 1669 aa20.1■□□□□ 0.81
CHD3-215ENST00000572750 IRS4O14654 1257 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms