RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 GOLGA2Q08379 1002 aa25.97■■□□□ 1.75
NUP88-204ENST00000572290 TWISTNBQ3B726 338 aaPredicted RBP25.97■■□□□ 1.75
NUP88-204ENST00000572290 NUP98P52948 1817 aa25.97■■□□□ 1.75
NUP88-204ENST00000572290 ALDH1B1P30837 517 aa25.96■■□□□ 1.75
NUP88-204ENST00000572290 SOGA3Q5TF21 947 aa25.96■■□□□ 1.75
NUP88-204ENST00000572290 LMNB1P20700 586 aa25.95■■□□□ 1.74
NUP88-204ENST00000572290 SLC10A5Q5PT55 438 aa25.95■■□□□ 1.74
NUP88-204ENST00000572290 RIC3Q7Z5B4 369 aa25.95■■□□□ 1.74
NUP88-204ENST00000572290 ISCA1Q9BUE6 129 aa25.95■■□□□ 1.74
NUP88-204ENST00000572290 TRMT112Q9UI30 125 aaKnown RBP25.95■■□□□ 1.74
NUP88-204ENST00000572290 C7orf43Q8WVR3 580 aa25.94■■□□□ 1.74
NUP88-204ENST00000572290 RPGRQ92834 1020 aaKnown RBP25.94■■□□□ 1.74
NUP88-204ENST00000572290 NLRP3Q96P20 1036 aa25.94■■□□□ 1.74
NUP88-204ENST00000572290 STK31Q9BXU1 1019 aa25.94■■□□□ 1.74
NUP88-204ENST00000572290 ATP5J2-PTCD1G3V325 749 aa25.93■■□□□ 1.74
NUP88-204ENST00000572290 SH3TC1Q8TE82 1336 aa25.92■■□□□ 1.74
NUP88-204ENST00000572290 CCER2I3L3R5 266 aa25.92■■□□□ 1.74
NUP88-204ENST00000572290 HOXA10P31260 410 aaPredicted RBP25.92■■□□□ 1.74
NUP88-204ENST00000572290 PRELPP51888 382 aa25.92■■□□□ 1.74
NUP88-204ENST00000572290 CCDC93Q567U6 631 aa25.92■■□□□ 1.74
NUP88-204ENST00000572290 C3orf67Q6ZVT6 689 aa25.92■■□□□ 1.74
NUP88-204ENST00000572290 TCERG1O14776 1098 aaKnown RBP25.91■■□□□ 1.74
NUP88-204ENST00000572290 DDX58O95786 925 aaKnown RBP25.91■■□□□ 1.74
NUP88-204ENST00000572290 RBM17Q96I25 401 aaKnown RBP25.91■■□□□ 1.74
NUP88-204ENST00000572290 TAOK3Q9H2K8 898 aa25.91■■□□□ 1.74
NUP88-204ENST00000572290 SPINK5Q9NQ38 1064 aaPredicted RBP25.91■■□□□ 1.74
NUP88-204ENST00000572290 TNRC6CQ9HCJ0 1690 aaKnown RBP25.9■■□□□ 1.74
NUP88-204ENST00000572290 EXOSC9Q06265 439 aaKnown RBP25.9■■□□□ 1.74
NUP88-204ENST00000572290 TRIM28Q13263 835 aaKnown RBP25.9■■□□□ 1.74
NUP88-204ENST00000572290 MYH16Q9H6N6 1097 aa25.9■■□□□ 1.74
NUP88-204ENST00000572290 LTBP3Q9NS15 1303 aa25.89■■□□□ 1.74
NUP88-204ENST00000572290 HCLS1P14317 486 aaPredicted RBP25.89■■□□□ 1.74
NUP88-204ENST00000572290 SYNE4Q8N205 404 aa25.89■■□□□ 1.74
NUP88-204ENST00000572290 ZNF428Q96B54 188 aa25.89■■□□□ 1.74
NUP88-204ENST00000572290 ZC3H4Q9UPT8 1303 aaKnown RBP25.88■■□□□ 1.73
NUP88-204ENST00000572290 CRAMP1Q96RY5 1269 aa25.88■■□□□ 1.73
NUP88-204ENST00000572290 MYD88Q99836 296 aa25.88■■□□□ 1.73
NUP88-204ENST00000572290 VAMP4O75379 141 aa25.87■■□□□ 1.73
NUP88-204ENST00000572290 SLC4A2P04920 1241 aa25.87■■□□□ 1.73
NUP88-204ENST00000572290 C1QTNF8P60827 252 aa25.87■■□□□ 1.73
NUP88-204ENST00000572290 ZNF521Q96K83 1311 aa25.87■■□□□ 1.73
NUP88-204ENST00000572290 OLFM4Q6UX06 510 aa25.86■■□□□ 1.73
NUP88-204ENST00000572290 RTKN2Q8IZC4 609 aa25.86■■□□□ 1.73
NUP88-204ENST00000572290 FAM89AQ96GI7 184 aa25.86■■□□□ 1.73
NUP88-204ENST00000572290 SLX4Q8IY92 1834 aa25.86■■□□□ 1.73
NUP88-204ENST00000572290 KSR2Q6VAB6 950 aa25.85■■□□□ 1.73
NUP88-204ENST00000572290 METTL22Q9BUU2 404 aaPredicted RBP25.85■■□□□ 1.73
NUP88-204ENST00000572290 KDM2BQ8NHM5 1336 aa25.85■■□□□ 1.73
NUP88-204ENST00000572290 FKBP4Q02790 459 aaKnown RBP eCLIP25.84■■□□□ 1.73
NUP88-204ENST00000572290 CC2D2BQ6DHV5 1058 aa25.84■■□□□ 1.73
NUP88-204ENST00000572290 MAP3K2Q9Y2U5 619 aa25.84■■□□□ 1.73
NUP88-204ENST00000572290 ANKRD36CQ5JPF3 1778 aa25.83■■□□□ 1.73
NUP88-204ENST00000572290 PI4KAP2A4QPH2 592 aa25.83■■□□□ 1.73
NUP88-204ENST00000572290 KIF3CO14782 793 aa25.83■■□□□ 1.73
NUP88-204ENST00000572290 PPEF1O14829 653 aaPredicted RBP25.83■■□□□ 1.73
NUP88-204ENST00000572290 G2E3Q7L622 706 aa25.83■■□□□ 1.73
NUP88-204ENST00000572290 PI4KAP1Q8N8J0 262 aa25.83■■□□□ 1.73
NUP88-204ENST00000572290 RTL5Q5HYW3 569 aaPredicted RBP25.82■■□□□ 1.72
NUP88-204ENST00000572290 CCDC191Q8NCU4 936 aa25.82■■□□□ 1.72
NUP88-204ENST00000572290 NMRK2Q9NPI5 230 aa25.82■■□□□ 1.72
NUP88-204ENST00000572290 ARFGEF2Q9Y6D5 1785 aa25.82■■□□□ 1.72
NUP88-204ENST00000572290 DDX46Q7L014 1031 aaKnown RBP25.81■■□□□ 1.72
NUP88-204ENST00000572290 ZBTB38Q8NAP3 1195 aaPredicted RBP25.81■■□□□ 1.72
NUP88-204ENST00000572290 CWC25Q9NXE8 425 aaPredicted RBP25.81■■□□□ 1.72
NUP88-204ENST00000572290 ABCC4O15439 1325 aa25.81■■□□□ 1.72
NUP88-204ENST00000572290 IRS4O14654 1257 aaPredicted RBP25.8■■□□□ 1.72
NUP88-204ENST00000572290 FLIIQ13045 1269 aa25.8■■□□□ 1.72
NUP88-204ENST00000572290 DIEXFQ68CQ4 756 aaKnown RBP25.8■■□□□ 1.72
NUP88-204ENST00000572290 GLTPD2A6NH11 291 aa25.79■■□□□ 1.72
NUP88-204ENST00000572290 NEXNQ0ZGT2 675 aa25.79■■□□□ 1.72
NUP88-204ENST00000572290 GRIPAP1Q4V328 841 aa25.79■■□□□ 1.72
NUP88-204ENST00000572290 ZNF277Q9NRM2 450 aaPredicted RBP25.79■■□□□ 1.72
NUP88-204ENST00000572290 BBOX1O75936 387 aa25.78■■□□□ 1.72
NUP88-204ENST00000572290 PCCAP05165 728 aaPredicted RBP25.78■■□□□ 1.72
NUP88-204ENST00000572290 SF3B3Q15393 1217 aaKnown RBP25.78■■□□□ 1.72
NUP88-204ENST00000572290 PSMD1Q99460 953 aa25.78■■□□□ 1.72
NUP88-204ENST00000572290 TMX4Q9H1E5 349 aaPredicted RBP25.78■■□□□ 1.72
NUP88-204ENST00000572290 HSP90B1P14625 803 aaKnown RBP25.77■■□□□ 1.72
NUP88-204ENST00000572290 FKBP5Q13451 457 aaPredicted RBP25.77■■□□□ 1.72
NUP88-204ENST00000572290 GRAPQ13588 217 aa25.77■■□□□ 1.72
NUP88-204ENST00000572290 DPY19L2Q6NUT2 758 aa25.77■■□□□ 1.72
NUP88-204ENST00000572290 GRAPLQ8TC17 118 aaPredicted RBP25.77■■□□□ 1.72
NUP88-204ENST00000572290 ATP6V0A2Q9Y487 856 aa25.77■■□□□ 1.72
NUP88-204ENST00000572290 SNED1Q8TER0 1413 aa25.77■■□□□ 1.72
NUP88-204ENST00000572290 FER1L6Q2WGJ9 1857 aa25.77■■□□□ 1.72
NUP88-204ENST00000572290 E9PSI1 815 aa25.76■■□□□ 1.71
NUP88-204ENST00000572290 IGKV5-2P06315 115 aa25.76■■□□□ 1.71
NUP88-204ENST00000572290 RRAGCQ9HB90 399 aa25.76■■□□□ 1.71
NUP88-204ENST00000572290 SBF1O95248 1867 aa25.75■■□□□ 1.71
NUP88-204ENST00000572290 SLC51AQ86UW1 340 aa25.75■■□□□ 1.71
NUP88-204ENST00000572290 IARSP41252 1262 aaKnown RBP25.74■■□□□ 1.71
NUP88-204ENST00000572290 CACNA1SQ13698 1873 aa25.74■■□□□ 1.71
NUP88-204ENST00000572290 SP8Q8IXZ3 490 aa25.73■■□□□ 1.71
NUP88-204ENST00000572290 DNAAF4Q8WXU2 420 aa25.73■■□□□ 1.71
NUP88-204ENST00000572290 JARID2Q92833 1246 aaPredicted RBP25.73■■□□□ 1.71
NUP88-204ENST00000572290 NEURL1BA8MQ27 555 aa25.72■■□□□ 1.71
NUP88-204ENST00000572290 TOMM70O94826 608 aa25.72■■□□□ 1.71
NUP88-204ENST00000572290 SLFN5Q08AF3 891 aa25.72■■□□□ 1.71
NUP88-204ENST00000572290 CWF19L2Q2TBE0 894 aaKnown RBP25.72■■□□□ 1.71
NUP88-204ENST00000572290 TMC4Q7Z404 712 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms